Wall clock time and date at job start Tue Mar 31 2020 22:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99991 * 2 1 4 4 C 1.53001 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47191 * 304.99887 * 4 3 2 6 6 C 1.52999 * 109.47189 * 64.99896 * 4 3 2 7 7 C 1.50701 * 109.46712 * 184.99593 * 4 3 2 8 8 O 1.21280 * 120.00132 * 328.27366 * 7 4 3 9 9 N 1.34778 * 119.99755 * 148.26722 * 7 4 3 10 10 C 1.47153 * 120.68201 * 355.59007 * 9 7 4 11 11 C 1.53891 * 108.04579 * 132.61275 * 10 9 7 12 12 H 1.09006 * 112.60860 * 182.32214 * 11 10 9 13 13 C 1.54547 * 107.80896 * 306.64343 * 11 10 9 14 14 C 1.54262 * 105.02937 * 88.90841 * 13 11 10 15 15 C 1.54789 * 104.82494 * 0.08681 * 14 13 11 16 16 H 1.09001 * 112.71979 * 146.70882 * 15 14 13 17 17 C 1.47153 * 120.68281 * 175.56858 * 9 7 4 18 18 N 1.48727 * 104.36252 * 24.66179 * 15 14 13 19 19 C 1.46902 * 111.00322 * 78.40304 * 18 15 14 20 20 C 1.50700 * 109.47043 * 75.20282 * 19 18 15 21 21 O 1.21296 * 119.99905 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00399 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00613 * 179.97438 * 22 20 19 24 24 H 1.08005 * 119.99536 * 0.02562 * 23 22 20 25 25 C 1.38942 * 120.00199 * 179.97438 * 23 22 20 26 26 N 1.31413 * 120.00195 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 120.00128 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47450 * 89.99583 * 27 25 23 29 29 H 1.48502 * 109.47101 * 210.00077 * 27 25 23 30 30 H 1.48497 * 109.47097 * 329.99593 * 27 25 23 31 31 H 1.08996 * 109.47317 * 299.99808 * 1 2 3 32 32 H 1.09001 * 109.47113 * 60.00058 * 1 2 3 33 33 H 1.09005 * 109.46845 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46849 * 59.99865 * 3 2 1 35 35 H 1.09004 * 109.46583 * 300.00089 * 3 2 1 36 36 H 1.09000 * 109.47340 * 306.25022 * 6 4 3 37 37 H 1.09001 * 109.47091 * 66.25133 * 6 4 3 38 38 H 1.09000 * 109.46715 * 186.24643 * 6 4 3 39 39 H 1.08996 * 109.74909 * 12.97428 * 10 9 7 40 40 H 1.09001 * 109.74515 * 252.24796 * 10 9 7 41 41 H 1.09005 * 110.34291 * 207.82592 * 13 11 10 42 42 H 1.08993 * 110.34258 * 329.98843 * 13 11 10 43 43 H 1.08995 * 110.34261 * 118.92541 * 14 13 11 44 44 H 1.08997 * 110.34391 * 241.19020 * 14 13 11 45 45 H 1.08999 * 109.74782 * 107.75188 * 17 9 7 46 46 H 1.09000 * 109.74675 * 347.02048 * 17 9 7 47 47 H 1.08996 * 109.47344 * 195.20414 * 19 18 15 48 48 H 1.09001 * 109.46781 * 315.20463 * 19 18 15 49 49 H 0.97004 * 119.99337 * 359.97438 * 22 20 19 50 50 H 0.97001 * 120.00351 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8514 0.5683 0.8409 6 6 3.9952 0.5369 -1.3083 7 6 4.1479 2.5561 0.1231 8 8 3.5818 3.5181 -0.3510 9 7 5.3249 2.7134 0.7607 10 6 5.9772 1.5738 1.4249 11 6 7.4586 1.5633 1.0082 12 1 8.0063 0.7200 1.4290 13 6 7.5154 1.5849 -0.5360 14 6 7.5182 3.0801 -0.9154 15 6 7.4651 3.8318 0.4367 16 1 8.0114 4.7748 0.4158 17 6 5.9842 4.0281 0.8066 18 7 8.0388 2.8707 1.4160 19 6 9.5051 2.8452 1.3316 20 6 10.0671 4.0850 1.9782 21 8 9.3196 4.9086 2.4621 22 7 11.4002 4.2788 2.0187 23 6 11.9115 5.4069 2.6064 24 1 11.2459 6.1403 3.0373 25 6 13.2859 5.6064 2.6486 26 7 13.7760 6.6875 3.2125 27 14 14.4371 4.3377 1.9040 28 1 14.6830 4.6691 0.4775 29 1 15.7253 4.3440 2.6429 30 1 13.8183 2.9912 1.9997 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6885 1.8464 -0.8900 36 1 3.4672 -0.4058 -1.4520 37 1 3.7779 1.2057 -2.1411 38 1 5.0680 0.3494 -1.2632 39 1 5.5006 0.6441 1.1140 40 1 5.8997 1.6843 2.5066 41 1 8.4272 1.1026 -0.8885 42 1 6.6393 1.0894 -0.9544 43 1 8.4314 3.3325 -1.4544 44 1 6.6426 3.3197 -1.5186 45 1 5.9075 4.4437 1.8114 46 1 5.5121 4.7020 0.0917 47 1 9.8835 1.9629 1.8477 48 1 9.8083 2.8119 0.2851 49 1 11.9980 3.6199 1.6320 50 1 14.7355 6.8266 3.2423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567667958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:35 Heat of formation + Delta-G solvation = -114.371608 kcal Electronic energy + Delta-G solvation = -31048.848315 eV Core-core repulsion = 26882.812099 eV Total energy + Delta-G solvation = -4166.036216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28034 -40.57890 -39.64970 -38.70241 -36.09055 -35.67713 -34.70451 -33.72814 -32.47378 -32.29686 -29.28751 -28.30403 -27.47698 -26.71606 -25.88891 -25.36611 -23.62549 -21.66930 -21.31501 -20.99773 -20.20554 -19.40668 -18.75989 -17.70792 -17.33449 -17.27917 -16.95002 -16.72874 -16.45380 -16.24470 -16.06505 -15.65648 -15.45762 -15.29326 -14.97380 -14.84839 -14.55393 -14.33915 -14.31973 -13.95346 -13.70869 -13.63642 -13.41590 -13.27356 -13.08077 -12.91044 -12.60044 -12.40638 -12.38302 -12.27988 -12.13832 -11.99621 -11.98730 -11.93033 -11.67856 -11.47051 -11.36883 -10.81311 -10.64555 -10.40599 -10.21812 -9.83320 -9.34383 -8.39376 -5.99976 1.30544 1.36605 1.45408 1.49886 1.80861 2.00745 2.24410 2.60363 2.81881 3.15768 3.17929 3.45733 3.64827 3.72353 3.82540 3.88941 3.95575 3.96728 4.13015 4.19135 4.25782 4.36840 4.43195 4.45336 4.48571 4.50155 4.54465 4.60714 4.63655 4.64496 4.66756 4.74838 4.80962 4.83783 4.86655 4.91638 4.96960 5.02363 5.13937 5.23725 5.39385 5.42653 5.54882 5.82340 5.92132 6.03890 6.12345 6.39822 6.62414 6.91617 7.06514 7.43377 8.01857 8.78464 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031858 B = 0.002327 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.676275 B =12028.936690 C =12335.323517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.082 3.918 4 C -0.103 4.103 5 H 0.123 0.877 6 C -0.134 4.134 7 C 0.521 3.479 8 O -0.587 6.587 9 N -0.596 5.596 10 C 0.112 3.888 11 C 0.048 3.952 12 H 0.140 0.860 13 C -0.140 4.140 14 C -0.142 4.142 15 C 0.058 3.942 16 H 0.073 0.927 17 C 0.136 3.864 18 N -0.502 5.502 19 C 0.048 3.952 20 C 0.452 3.548 21 O -0.608 6.608 22 N -0.594 5.594 23 C -0.324 4.324 24 H 0.053 0.947 25 C -0.019 4.019 26 N -0.937 5.937 27 Si 0.966 3.034 28 H -0.259 1.259 29 H -0.277 1.277 30 H -0.228 1.228 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.126 0.874 48 H 0.080 0.920 49 H 0.389 0.611 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.490 -23.373 -11.055 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.004 3.996 4 C -0.124 4.124 5 H 0.141 0.859 6 C -0.191 4.191 7 C 0.310 3.690 8 O -0.468 6.468 9 N -0.328 5.328 10 C -0.009 4.009 11 C -0.060 4.060 12 H 0.157 0.843 13 C -0.179 4.179 14 C -0.181 4.181 15 C -0.052 4.052 16 H 0.091 0.909 17 C 0.012 3.988 18 N -0.225 5.225 19 C -0.084 4.084 20 C 0.239 3.761 21 O -0.492 6.492 22 N -0.236 5.236 23 C -0.454 4.454 24 H 0.071 0.929 25 C -0.217 4.217 26 N -0.578 5.578 27 Si 0.786 3.214 28 H -0.183 1.183 29 H -0.202 1.202 30 H -0.151 1.151 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.144 0.856 48 H 0.098 0.902 49 H 0.224 0.776 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.140 -22.213 -10.320 31.085 hybrid contribution 1.037 0.919 -0.679 1.543 sum -18.103 -21.294 -10.999 30.035 Atomic orbital electron populations 1.22941 0.79385 1.04121 1.00622 1.87770 1.21352 1.27176 1.95562 1.22142 0.92073 0.84655 1.00701 1.21233 0.94604 0.92950 1.03630 0.85874 1.21742 1.02620 1.01262 0.93469 1.20897 0.80335 0.91201 0.76558 1.90680 1.62404 1.43396 1.50296 1.48157 1.21051 1.10548 1.53006 1.22322 0.91653 0.88997 0.97968 1.23732 0.95412 0.92535 0.94352 0.84255 1.22940 1.04023 0.94927 0.95999 1.22835 1.01866 0.96626 0.96807 1.23266 0.94501 0.96837 0.90604 0.90901 1.21512 0.91076 0.85020 1.01188 1.64982 1.04412 1.05689 1.47371 1.21913 0.89559 0.96104 1.00781 1.20980 0.81782 0.89726 0.83564 1.90553 1.59007 1.48510 1.51098 1.42040 1.06567 1.20738 1.54302 1.18965 0.92048 0.99028 1.35340 0.92932 1.26139 0.98388 0.99641 0.97509 1.69815 1.14291 1.28712 1.45012 0.85352 0.77902 0.79255 0.78916 1.18347 1.20212 1.15082 0.93602 0.93588 0.87662 0.93639 0.93159 0.89446 0.93397 0.90221 0.85581 0.90457 0.89495 0.89350 0.91581 0.91826 0.92687 0.90522 0.85603 0.90223 0.77558 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.37 10.14 -148.98 -1.51 -7.88 16 3 C 0.08 1.44 4.85 71.98 0.35 1.79 16 4 C -0.10 -1.62 2.23 -11.54 -0.03 -1.64 16 5 H 0.12 1.39 6.03 -2.39 -0.01 1.37 16 6 C -0.13 -1.67 9.14 71.98 0.66 -1.01 16 7 C 0.52 12.04 6.73 87.66 0.59 12.63 16 8 O -0.59 -18.60 15.80 -3.03 -0.05 -18.65 16 9 N -0.60 -13.23 2.24 -815.01 -1.83 -15.06 16 10 C 0.11 1.74 5.68 86.56 0.49 2.23 16 11 C 0.05 0.78 3.67 45.39 0.17 0.95 16 12 H 0.14 1.45 7.97 -2.38 -0.02 1.43 16 13 C -0.14 -2.04 5.68 31.55 0.18 -1.86 16 14 C -0.14 -3.11 5.48 31.63 0.17 -2.93 16 15 C 0.06 1.68 3.23 45.47 0.15 1.83 16 16 H 0.07 2.73 7.01 -2.39 -0.02 2.71 16 17 C 0.14 3.95 5.88 86.56 0.51 4.46 16 18 N -0.50 -13.62 4.56 -831.12 -3.79 -17.41 16 19 C 0.05 1.35 5.15 85.56 0.44 1.79 16 20 C 0.45 19.85 7.44 87.66 0.65 20.50 16 21 O -0.61 -33.31 14.93 -3.08 -0.05 -33.36 16 22 N -0.59 -27.48 5.09 -306.99 -1.56 -29.05 16 23 C -0.32 -18.94 10.16 84.04 0.85 -18.09 16 24 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 25 C -0.02 -1.03 5.50 84.92 0.47 -0.57 16 26 N -0.94 -56.78 13.96 21.66 0.30 -56.47 16 27 Si 0.97 38.37 27.74 68.60 1.90 40.27 16 28 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 29 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 30 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.00 8.02 -2.38 -0.02 0.98 16 36 H 0.09 0.96 7.66 -2.39 -0.02 0.94 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.73 5.74 -2.39 -0.01 0.72 16 39 H 0.13 1.04 5.58 -2.39 -0.01 1.02 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.00 8.14 -2.38 -0.02 0.99 16 42 H 0.09 1.04 5.44 -2.39 -0.01 1.02 16 43 H 0.07 1.44 7.94 -2.39 -0.02 1.42 16 44 H 0.06 1.48 7.84 -2.39 -0.02 1.46 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 2.40 7.15 -2.39 -0.02 2.39 16 47 H 0.13 2.72 7.96 -2.39 -0.02 2.70 16 48 H 0.08 1.89 6.98 -2.39 -0.02 1.88 16 49 H 0.39 14.72 5.76 -92.71 -0.53 14.19 16 50 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -83.07 384.92 0.68 -82.38 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.36 Total: 33.65 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 6.90 Total: 21.58 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -6.88 Total: -117.99 kcal Atomic # 8 Polarization: -58.28 SS G_CDS: -1.60 Total: -59.89 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.90 Total: 40.27 kcal Total: -83.07 0.68 -82.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567667958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.988 kcal (2) G-P(sol) polarization free energy of solvation -83.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds