Wall clock time and date at job start Tue Mar 31 2020 22:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99768 * 2 1 4 4 C 1.52996 * 109.47235 * 124.99533 * 3 2 1 5 5 O 1.42895 * 109.47144 * 179.97438 * 4 3 2 6 6 C 1.42902 * 114.00078 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47263 * 29.99916 * 6 5 4 8 8 C 1.53006 * 109.46554 * 269.99754 * 6 5 4 9 9 C 1.50702 * 109.47245 * 150.00095 * 6 5 4 10 10 O 1.21276 * 119.99977 * 4.99430 * 9 6 5 11 11 N 1.34775 * 119.99619 * 184.99566 * 9 6 5 12 12 C 1.46508 * 119.99521 * 179.97438 * 11 9 6 13 13 H 1.08994 * 110.62988 * 31.89834 * 12 11 9 14 14 C 1.55144 * 110.85390 * 268.68503 * 12 11 9 15 15 C 1.54906 * 101.65201 * 205.89407 * 14 12 11 16 16 N 1.47848 * 104.79253 * 37.07548 * 15 14 12 17 17 C 1.46902 * 110.99608 * 213.63549 * 16 15 14 18 18 C 1.50702 * 109.47027 * 290.84046 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00057 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46646 * 60.00463 * 25 23 21 27 27 H 1.48504 * 109.47036 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47259 * 300.00225 * 25 23 21 29 29 C 1.47437 * 108.57018 * 335.90043 * 16 15 14 30 30 H 1.07996 * 120.00274 * 0.02562 * 1 2 3 31 31 H 1.08006 * 119.99702 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.00280 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.46688 * 4.99491 * 3 2 1 34 34 H 1.08998 * 109.46811 * 244.99528 * 3 2 1 35 35 H 1.09004 * 109.46949 * 59.99780 * 4 3 2 36 36 H 1.08995 * 109.47350 * 300.00269 * 4 3 2 37 37 H 1.08998 * 109.47326 * 299.99501 * 8 6 5 38 38 H 1.08997 * 109.47258 * 60.00027 * 8 6 5 39 39 H 1.09008 * 109.46824 * 180.02562 * 8 6 5 40 40 H 0.96993 * 120.00601 * 0.02562 * 11 9 6 41 41 H 1.08999 * 110.99437 * 323.99201 * 14 12 11 42 42 H 1.09001 * 110.98484 * 87.76879 * 14 12 11 43 43 H 1.08996 * 110.37455 * 278.24584 * 15 14 12 44 44 H 1.08997 * 110.37446 * 155.90114 * 15 14 12 45 45 H 1.09004 * 109.47131 * 170.84290 * 17 16 15 46 46 H 1.09000 * 109.47732 * 50.84401 * 17 16 15 47 47 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 48 48 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.89060 * 120.39533 * 29 16 15 50 50 H 1.09004 * 109.89036 * 241.42915 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3333 1.1817 5 8 3.7497 2.5706 1.1813 6 6 4.6892 2.6994 2.2504 7 1 5.0656 1.7138 2.5241 8 6 4.0014 3.3367 3.4595 9 6 5.8368 3.5704 1.8084 10 8 5.8062 4.1086 0.7220 11 7 6.8971 3.7512 2.6205 12 6 8.0131 4.5976 2.1906 13 1 7.6586 5.4034 1.5479 14 6 9.0978 3.7562 1.4677 15 6 10.3691 4.6060 1.7148 16 7 10.2066 5.1390 3.0842 17 6 10.7971 6.4791 3.2010 18 6 12.2975 6.3770 3.1036 19 8 12.8232 5.2946 2.9514 20 7 13.0549 7.4893 3.1795 21 6 14.4196 7.3972 3.0852 22 1 14.8876 6.4333 2.9497 23 6 15.2004 8.5437 3.1641 24 7 14.6310 9.7164 3.3295 25 14 17.0598 8.4180 3.0363 26 1 17.4268 7.8235 1.7259 27 1 17.6565 9.7732 3.1501 28 1 17.5743 7.5576 4.1318 29 6 8.7690 5.1649 3.4105 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3584 2.1316 0.0895 34 1 2.6213 1.4026 -0.9313 35 1 3.7398 0.5067 1.0922 36 1 2.4771 1.2358 2.1130 37 1 3.6252 4.3223 3.1858 38 1 3.1714 2.7067 3.7791 39 1 4.7182 3.4354 4.2749 40 1 6.9218 3.3205 3.4892 41 1 9.1933 2.7696 1.9211 42 1 8.8829 3.6748 0.4022 43 1 10.4262 5.4219 0.9943 44 1 11.2606 3.9818 1.6539 45 1 10.5242 6.9138 4.1626 46 1 10.4230 7.1124 2.3967 47 1 12.6346 8.3550 3.3010 48 1 15.1761 10.5168 3.3849 49 1 8.5764 4.5459 4.2868 50 1 8.4508 6.1895 3.6031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660966388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:57 Heat of formation + Delta-G solvation = -92.290759 kcal Electronic energy + Delta-G solvation = -28659.100160 eV Core-core repulsion = 24494.021441 eV Total energy + Delta-G solvation = -4165.078719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44123 -39.17058 -38.20412 -37.38217 -35.51888 -34.58547 -33.81147 -32.26495 -31.27381 -30.63293 -29.42820 -28.47703 -26.57633 -24.86154 -24.11706 -23.32419 -21.34921 -21.02883 -20.68572 -20.19185 -19.19380 -17.87818 -17.65174 -17.44319 -16.55186 -16.19032 -15.84187 -15.65084 -15.44211 -14.96918 -14.77118 -14.45643 -14.42835 -13.87446 -13.79962 -13.76243 -13.56140 -13.09759 -12.98880 -12.88271 -12.79336 -12.66948 -12.36771 -11.93032 -11.78174 -11.61547 -11.60224 -11.56015 -11.50704 -11.46529 -11.10602 -10.95505 -10.72606 -10.42680 -10.33747 -10.19509 -9.85316 -9.74449 -9.47074 -9.24109 -8.45420 -7.96344 -7.89593 -6.39544 -3.80359 1.73679 2.36588 2.52313 3.21526 3.27057 3.31360 3.46581 3.93048 4.01990 4.23303 4.32366 4.41913 4.44882 4.50343 4.58975 4.62449 4.73080 4.78325 4.86561 4.93795 4.95303 5.10483 5.16773 5.23368 5.27423 5.34140 5.36624 5.39388 5.48835 5.57489 5.60337 5.63969 5.73538 5.80844 5.87612 5.96967 6.10539 6.12634 6.24534 6.29395 6.31792 6.46611 6.66006 7.18347 7.19435 7.27423 7.56904 7.98917 8.08118 8.64217 9.20336 9.56796 10.08853 10.78236 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042989 B = 0.001501 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.167288 B =18648.726397 C =18846.781510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.072 3.928 7 H 0.087 0.913 8 C -0.171 4.171 9 C 0.514 3.486 10 O -0.517 6.517 11 N -0.717 5.717 12 C 0.124 3.876 13 H 0.097 0.903 14 C -0.140 4.140 15 C 0.054 3.946 16 N -0.501 5.501 17 C 0.039 3.961 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.038 3.962 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.401 0.599 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.080 0.920 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.725 -15.005 -0.179 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.011 3.989 7 H 0.104 0.896 8 C -0.228 4.228 9 C 0.299 3.701 10 O -0.391 6.391 11 N -0.370 5.370 12 C 0.018 3.982 13 H 0.115 0.885 14 C -0.179 4.179 15 C -0.074 4.074 16 N -0.225 5.225 17 C -0.093 4.093 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.091 4.091 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.236 0.764 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.069 0.931 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.070 -15.300 -0.857 30.241 hybrid contribution 0.310 0.715 0.152 0.794 sum -25.761 -14.585 -0.705 29.611 Atomic orbital electron populations 1.23917 0.95882 1.02105 1.00524 1.22804 0.96023 0.97983 1.00429 1.20642 0.97886 0.95915 0.98617 1.22551 0.94136 0.86028 0.98538 1.88039 1.53635 1.37345 1.48540 1.21876 0.89419 0.99072 0.88555 0.89565 1.22241 1.01640 1.02640 0.96326 1.20375 0.82812 0.81946 0.84979 1.90737 1.79398 1.47772 1.21221 1.45889 1.19104 1.51299 1.20718 1.22288 0.85779 0.93402 0.96725 0.88469 1.23150 0.94312 0.99523 1.00921 1.23012 0.98271 0.98094 0.88007 1.63294 1.10604 1.22332 1.26317 1.22149 0.95596 0.89672 1.01853 1.19704 0.87535 0.85276 0.84517 1.90506 1.73818 1.27455 1.54327 1.41849 1.06943 1.07624 1.63802 1.19646 0.81149 0.95286 1.46778 0.87994 1.25242 1.00646 0.94649 0.97342 1.69603 1.36678 0.98147 1.49993 0.85929 0.82166 0.77134 0.79049 1.19937 1.21001 1.19913 1.23081 0.88151 1.00843 0.97063 0.88386 0.88267 0.87143 0.90497 0.89826 0.92990 0.92968 0.90961 0.91171 0.90765 0.76408 0.90399 0.90572 0.93637 0.88422 0.89317 0.93148 0.77528 0.91858 0.90146 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.94 14.32 29.02 0.42 -0.52 16 2 C -0.15 -0.85 9.52 -36.02 -0.34 -1.19 16 3 C -0.09 -0.63 6.03 -27.88 -0.17 -0.80 16 4 C 0.06 0.44 5.73 37.16 0.21 0.66 16 5 O -0.36 -3.65 9.53 -55.09 -0.52 -4.17 16 6 C 0.07 0.58 3.13 -27.88 -0.09 0.50 16 7 H 0.09 0.48 7.79 -51.93 -0.40 0.08 16 8 C -0.17 -1.00 9.48 37.16 0.35 -0.64 16 9 C 0.51 5.75 7.18 -10.99 -0.08 5.67 16 10 O -0.52 -8.28 16.15 -14.30 -0.23 -8.52 16 11 N -0.72 -6.56 5.14 -52.04 -0.27 -6.82 16 12 C 0.12 1.43 3.31 -66.10 -0.22 1.21 16 13 H 0.10 1.28 7.55 -51.93 -0.39 0.89 16 14 C -0.14 -1.78 6.77 -24.59 -0.17 -1.94 16 15 C 0.05 0.86 5.74 -2.30 -0.01 0.84 16 16 N -0.50 -8.08 4.86 -232.68 -1.13 -9.21 16 17 C 0.04 0.69 5.05 -4.97 -0.03 0.66 16 18 C 0.44 10.46 7.58 -10.98 -0.08 10.38 16 19 O -0.58 -15.50 14.61 5.55 0.08 -15.42 16 20 N -0.57 -14.32 5.29 -10.96 -0.06 -14.38 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 C 0.04 0.44 6.61 -2.84 -0.02 0.42 16 30 H 0.10 0.46 7.84 -52.49 -0.41 0.05 16 31 H 0.10 0.39 8.06 -52.48 -0.42 -0.04 16 32 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.05 0.29 7.87 -51.93 -0.41 -0.12 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 39 H 0.07 0.30 7.93 -51.92 -0.41 -0.11 16 40 H 0.40 2.46 8.15 -40.82 -0.33 2.13 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.74 7.62 -51.93 -0.40 0.35 16 44 H 0.10 1.80 7.37 -51.93 -0.38 1.42 16 45 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 46 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 50 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 LS Contribution 414.20 15.07 6.24 6.24 Total: -1.00 -34.65 414.20 -9.01 -43.66 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -8.36 Total: 9.16 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.46 Total: 7.26 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.73 Total: -54.30 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.67 Total: -28.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.65 -9.01 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660966388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.629 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds