Wall clock time and date at job start Tue Mar 31 2020 22:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99768 * 2 1 4 4 C 1.52996 * 109.47235 * 124.99533 * 3 2 1 5 5 O 1.42895 * 109.47144 * 179.97438 * 4 3 2 6 6 C 1.42902 * 114.00078 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47263 * 29.99916 * 6 5 4 8 8 C 1.53006 * 109.46554 * 269.99754 * 6 5 4 9 9 C 1.50702 * 109.47245 * 150.00095 * 6 5 4 10 10 O 1.21276 * 119.99977 * 4.99430 * 9 6 5 11 11 N 1.34775 * 119.99619 * 184.99566 * 9 6 5 12 12 C 1.46508 * 119.99521 * 179.97438 * 11 9 6 13 13 H 1.08994 * 110.62988 * 31.89834 * 12 11 9 14 14 C 1.55144 * 110.85390 * 268.68503 * 12 11 9 15 15 C 1.54906 * 101.65201 * 205.89407 * 14 12 11 16 16 N 1.47848 * 104.79253 * 37.07548 * 15 14 12 17 17 C 1.46902 * 110.99608 * 213.63549 * 16 15 14 18 18 C 1.50702 * 109.47027 * 290.84046 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00057 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46646 * 60.00463 * 25 23 21 27 27 H 1.48504 * 109.47036 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47259 * 300.00225 * 25 23 21 29 29 C 1.47437 * 108.57018 * 335.90043 * 16 15 14 30 30 H 1.07996 * 120.00274 * 0.02562 * 1 2 3 31 31 H 1.08006 * 119.99702 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.00280 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.46688 * 4.99491 * 3 2 1 34 34 H 1.08998 * 109.46811 * 244.99528 * 3 2 1 35 35 H 1.09004 * 109.46949 * 59.99780 * 4 3 2 36 36 H 1.08995 * 109.47350 * 300.00269 * 4 3 2 37 37 H 1.08998 * 109.47326 * 299.99501 * 8 6 5 38 38 H 1.08997 * 109.47258 * 60.00027 * 8 6 5 39 39 H 1.09008 * 109.46824 * 180.02562 * 8 6 5 40 40 H 0.96993 * 120.00601 * 0.02562 * 11 9 6 41 41 H 1.08999 * 110.99437 * 323.99201 * 14 12 11 42 42 H 1.09001 * 110.98484 * 87.76879 * 14 12 11 43 43 H 1.08996 * 110.37455 * 278.24584 * 15 14 12 44 44 H 1.08997 * 110.37446 * 155.90114 * 15 14 12 45 45 H 1.09004 * 109.47131 * 170.84290 * 17 16 15 46 46 H 1.09000 * 109.47732 * 50.84401 * 17 16 15 47 47 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 48 48 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.89060 * 120.39533 * 29 16 15 50 50 H 1.09004 * 109.89036 * 241.42915 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3333 1.1817 5 8 3.7497 2.5706 1.1813 6 6 4.6892 2.6994 2.2504 7 1 5.0656 1.7138 2.5241 8 6 4.0014 3.3367 3.4595 9 6 5.8368 3.5704 1.8084 10 8 5.8062 4.1086 0.7220 11 7 6.8971 3.7512 2.6205 12 6 8.0131 4.5976 2.1906 13 1 7.6586 5.4034 1.5479 14 6 9.0978 3.7562 1.4677 15 6 10.3691 4.6060 1.7148 16 7 10.2066 5.1390 3.0842 17 6 10.7971 6.4791 3.2010 18 6 12.2975 6.3770 3.1036 19 8 12.8232 5.2946 2.9514 20 7 13.0549 7.4893 3.1795 21 6 14.4196 7.3972 3.0852 22 1 14.8876 6.4333 2.9497 23 6 15.2004 8.5437 3.1641 24 7 14.6310 9.7164 3.3295 25 14 17.0598 8.4180 3.0363 26 1 17.4268 7.8235 1.7259 27 1 17.6565 9.7732 3.1501 28 1 17.5743 7.5576 4.1318 29 6 8.7690 5.1649 3.4105 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3584 2.1316 0.0895 34 1 2.6213 1.4026 -0.9313 35 1 3.7398 0.5067 1.0922 36 1 2.4771 1.2358 2.1130 37 1 3.6252 4.3223 3.1858 38 1 3.1714 2.7067 3.7791 39 1 4.7182 3.4354 4.2749 40 1 6.9218 3.3205 3.4892 41 1 9.1933 2.7696 1.9211 42 1 8.8829 3.6748 0.4022 43 1 10.4262 5.4219 0.9943 44 1 11.2606 3.9818 1.6539 45 1 10.5242 6.9138 4.1626 46 1 10.4230 7.1124 2.3967 47 1 12.6346 8.3550 3.3010 48 1 15.1761 10.5168 3.3849 49 1 8.5764 4.5459 4.2868 50 1 8.4508 6.1895 3.6031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660966388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:56 Heat of formation + Delta-G solvation = -118.012123 kcal Electronic energy + Delta-G solvation = -28660.215522 eV Core-core repulsion = 24494.021441 eV Total energy + Delta-G solvation = -4166.194081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35611 -40.46462 -39.34644 -38.60189 -36.02125 -35.98176 -35.44294 -33.32756 -32.95325 -31.73131 -29.96320 -29.52286 -28.08894 -26.10699 -25.32595 -23.86593 -22.47050 -22.07357 -21.53965 -20.98423 -20.65409 -19.87171 -18.47056 -18.15987 -17.78317 -17.20020 -16.91938 -16.62375 -16.48966 -16.22462 -15.98249 -15.62022 -15.58222 -15.55220 -14.90609 -14.48103 -14.41356 -14.36784 -14.11431 -13.72984 -13.60605 -13.42416 -13.32907 -13.23371 -13.17546 -12.98912 -12.74509 -12.68748 -12.41807 -12.25203 -12.18982 -12.11856 -12.10865 -11.98151 -11.87923 -11.46847 -11.02695 -10.50150 -10.33458 -10.26644 -10.11616 -9.99018 -9.26031 -8.44925 -5.93518 1.33326 1.40506 1.42090 1.52573 1.53013 1.78862 2.07957 2.29737 2.75925 2.92650 3.21725 3.33194 3.56413 3.64509 3.73317 3.92242 3.95542 4.02352 4.10012 4.15291 4.25275 4.26129 4.30712 4.34765 4.43606 4.44843 4.47605 4.52955 4.67110 4.70509 4.80085 4.82723 4.88712 4.89404 5.01995 5.04071 5.10802 5.11476 5.22348 5.42058 5.44330 5.73215 5.84262 5.85006 5.98073 6.09096 6.11072 6.53434 6.62706 7.14836 7.20016 7.58630 8.14684 8.72328 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042989 B = 0.001501 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.167288 B =18648.726397 C =18846.781510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C -0.094 4.094 4 C 0.062 3.938 5 O -0.392 6.392 6 C 0.073 3.927 7 H 0.117 0.883 8 C -0.165 4.165 9 C 0.511 3.489 10 O -0.573 6.573 11 N -0.699 5.699 12 C 0.133 3.867 13 H 0.081 0.919 14 C -0.128 4.128 15 C 0.055 3.945 16 N -0.518 5.518 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.271 1.271 29 C 0.043 3.957 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.420 0.580 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.065 0.935 45 H 0.116 0.884 46 H 0.067 0.933 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.106 0.894 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.131 -15.835 1.496 32.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C -0.131 4.131 4 C -0.014 4.014 5 O -0.311 6.311 6 C 0.012 3.988 7 H 0.135 0.865 8 C -0.223 4.223 9 C 0.298 3.702 10 O -0.452 6.452 11 N -0.353 5.353 12 C 0.027 3.973 13 H 0.099 0.901 14 C -0.167 4.167 15 C -0.073 4.073 16 N -0.243 5.243 17 C -0.081 4.081 18 C 0.228 3.772 19 O -0.501 6.501 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.211 4.211 24 N -0.562 5.562 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.085 4.085 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.258 0.742 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.134 0.866 46 H 0.085 0.915 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.124 0.876 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.506 -16.140 0.868 31.904 hybrid contribution 0.696 0.929 -0.382 1.222 sum -26.811 -15.211 0.485 30.829 Atomic orbital electron populations 1.24080 0.95844 1.02766 0.99623 1.22816 0.96204 0.97674 1.01211 1.20630 0.97803 0.96527 0.98148 1.22694 0.94273 0.85194 0.99235 1.88006 1.54312 1.38964 1.49780 1.22030 0.88272 0.99920 0.88560 0.86511 1.22243 1.02590 1.01696 0.95768 1.21072 0.83558 0.81413 0.84169 1.90716 1.80563 1.50153 1.23721 1.45688 1.17846 1.50480 1.21266 1.22004 0.85985 0.93015 0.96336 0.90111 1.23032 0.93104 0.99614 1.00986 1.22856 0.98533 0.97787 0.88153 1.63229 1.13534 1.21386 1.26148 1.22031 0.91016 0.91160 1.03869 1.20779 0.90038 0.84103 0.82270 1.90481 1.75374 1.28795 1.55432 1.41920 1.06445 1.08367 1.64554 1.19624 0.82776 0.94887 1.49020 0.90345 1.26003 1.04770 0.94034 0.96338 1.69665 1.38202 0.98564 1.49789 0.85014 0.76922 0.77663 0.78889 1.19835 1.19516 1.19650 1.23151 0.85244 1.02497 0.97630 0.88423 0.86972 0.86091 0.91213 0.91333 0.91984 0.91177 0.92848 0.89470 0.88476 0.74155 0.89347 0.91084 0.94749 0.91700 0.86648 0.91524 0.77069 0.91353 0.87572 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.61 14.32 67.78 0.97 -0.64 16 2 C -0.16 -1.58 9.52 25.65 0.24 -1.33 16 3 C -0.09 -1.23 6.03 29.85 0.18 -1.05 16 4 C 0.06 0.77 5.73 71.98 0.41 1.18 16 5 O -0.39 -7.64 9.53 -129.99 -1.24 -8.88 16 6 C 0.07 1.02 3.13 29.85 0.09 1.11 16 7 H 0.12 0.89 7.79 -2.39 -0.02 0.87 16 8 C -0.17 -1.46 9.48 71.98 0.68 -0.78 16 9 C 0.51 10.75 7.18 87.66 0.63 11.38 16 10 O -0.57 -18.52 16.15 15.97 0.26 -18.26 16 11 N -0.70 -11.09 5.14 -436.94 -2.25 -13.33 16 12 C 0.13 2.85 3.31 46.17 0.15 3.01 16 13 H 0.08 2.07 7.55 -2.39 -0.02 2.05 16 14 C -0.13 -3.18 6.77 31.98 0.22 -2.97 16 15 C 0.05 1.77 5.74 86.77 0.50 2.27 16 16 N -0.52 -16.10 4.86 -890.08 -4.33 -20.43 16 17 C 0.05 1.73 5.05 85.56 0.43 2.16 16 18 C 0.44 21.03 7.58 87.66 0.66 21.69 16 19 O -0.62 -34.01 14.61 -3.07 -0.04 -34.06 16 20 N -0.58 -29.65 5.29 -306.98 -1.62 -31.28 16 21 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 24 N -0.92 -49.97 13.05 21.66 0.28 -49.68 16 25 Si 0.99 43.19 29.55 68.60 2.03 45.21 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 29 C 0.04 0.89 6.61 86.65 0.57 1.46 16 30 H 0.10 0.83 7.84 -2.91 -0.02 0.81 16 31 H 0.11 0.67 8.06 -2.91 -0.02 0.64 16 32 H 0.12 0.91 8.06 -2.91 -0.02 0.88 16 33 H 0.07 0.97 7.79 -2.39 -0.02 0.96 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 0.62 8.08 -2.38 -0.02 0.60 16 36 H 0.07 0.60 7.87 -2.39 -0.02 0.58 16 37 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.50 7.87 -2.39 -0.02 0.48 16 39 H 0.10 0.39 7.93 -2.38 -0.02 0.37 16 40 H 0.42 3.55 8.15 -92.71 -0.76 2.79 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.03 1.16 7.62 -2.39 -0.02 1.14 16 44 H 0.06 2.51 7.37 -2.39 -0.02 2.49 16 45 H 0.12 3.35 8.03 -2.38 -0.02 3.33 16 46 H 0.07 2.08 7.85 -2.39 -0.02 2.06 16 47 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 48 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 49 H 0.11 1.72 7.72 -2.39 -0.02 1.70 16 50 H 0.08 1.45 7.55 -2.39 -0.02 1.43 16 Total: -1.00 -78.15 414.20 -0.43 -78.58 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.55 Total: 33.04 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.03 Total: 19.08 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -7.92 Total: -114.72 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -1.03 Total: -61.20 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -78.15 -0.43 -78.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660966388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.431 kcal (2) G-P(sol) polarization free energy of solvation -78.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds