Wall clock time and date at job start Tue Mar 31 2020 22:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00147 * 2 1 4 4 C 1.53006 * 109.46909 * 125.00182 * 3 2 1 5 5 O 1.42899 * 109.47075 * 179.97438 * 4 3 2 6 6 C 1.42898 * 114.00025 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47259 * 330.00253 * 6 5 4 8 8 C 1.53002 * 109.47113 * 90.00268 * 6 5 4 9 9 C 1.50703 * 109.47171 * 210.00101 * 6 5 4 10 10 O 1.21282 * 120.00069 * 354.99878 * 9 6 5 11 11 N 1.34770 * 119.99967 * 175.00411 * 9 6 5 12 12 C 1.46504 * 120.00306 * 180.02562 * 11 9 6 13 13 H 1.09008 * 110.28482 * 325.69934 * 12 11 9 14 14 C 1.54263 * 110.32322 * 87.82147 * 12 11 9 15 15 C 1.54386 * 105.05333 * 118.90201 * 14 12 11 16 16 N 1.48554 * 104.59736 * 23.85167 * 15 14 12 17 17 C 1.46900 * 110.99807 * 200.95790 * 16 15 14 18 18 C 1.50700 * 109.47280 * 290.12774 * 17 16 15 19 19 O 1.21287 * 120.00124 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99938 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99929 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99615 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99954 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00077 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99927 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47272 * 59.99632 * 25 23 21 27 27 H 1.48505 * 109.46999 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47002 * 299.99720 * 25 23 21 29 29 C 1.48719 * 104.29019 * 320.57177 * 16 15 14 30 30 H 1.08003 * 120.00411 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.00094 * 359.97438 * 1 2 3 32 32 H 1.08008 * 119.99807 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47172 * 4.99974 * 3 2 1 34 34 H 1.08998 * 109.47163 * 244.99342 * 3 2 1 35 35 H 1.09000 * 109.47373 * 59.99916 * 4 3 2 36 36 H 1.09007 * 109.46576 * 299.99795 * 4 3 2 37 37 H 1.09000 * 109.46986 * 300.00041 * 8 6 5 38 38 H 1.09002 * 109.47075 * 59.99312 * 8 6 5 39 39 H 1.08996 * 109.47407 * 180.02562 * 8 6 5 40 40 H 0.97005 * 120.00514 * 0.02562 * 11 9 6 41 41 H 1.09002 * 110.32252 * 237.79228 * 14 12 11 42 42 H 1.08996 * 110.32454 * 0.02562 * 14 12 11 43 43 H 1.08997 * 110.40537 * 142.63294 * 15 14 12 44 44 H 1.08997 * 110.40681 * 264.95170 * 15 14 12 45 45 H 1.08998 * 109.47266 * 50.12918 * 17 16 15 46 46 H 1.09000 * 109.46752 * 170.12719 * 17 16 15 47 47 H 0.96999 * 120.00188 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00157 * 179.97438 * 24 23 21 49 49 H 1.09002 * 110.38985 * 280.64336 * 29 16 15 50 50 H 1.08999 * 110.50902 * 158.14902 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 8 3.7500 2.5702 1.1814 6 6 4.6887 2.6993 2.2510 7 1 4.3358 2.1351 3.1143 8 6 6.0472 2.1538 1.8060 9 6 4.8287 4.1528 2.6238 10 8 4.2583 5.0032 1.9739 11 7 5.5879 4.5076 3.6794 12 6 5.7235 5.9205 4.0422 13 1 5.7135 6.5431 3.1475 14 6 4.5884 6.3393 4.9991 15 6 5.2999 6.7832 6.2953 16 7 6.6672 7.1668 5.8593 17 6 7.6073 7.1368 6.9877 18 6 7.2920 8.2660 7.9345 19 8 6.3747 9.0219 7.6928 20 7 8.0300 8.4367 9.0492 21 6 7.7435 9.4645 9.9103 22 1 6.9261 10.1369 9.6955 23 6 8.5040 9.6401 11.0599 24 7 9.4981 8.8216 11.3215 25 14 8.1131 11.0399 12.2334 26 1 6.7259 10.8878 12.7408 27 1 9.0640 11.0099 13.3738 28 1 8.2395 12.3353 11.5183 29 6 7.0266 6.1469 4.8384 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4025 -0.9313 35 1 3.7400 0.5064 1.0921 36 1 2.4771 1.2354 2.1131 37 1 5.9459 1.1026 1.5363 38 1 6.4001 2.7180 0.9427 39 1 6.7631 2.2519 2.6220 40 1 6.0445 3.8275 4.1989 41 1 4.0224 7.1687 4.5749 42 1 3.9305 5.4936 5.1991 43 1 4.7876 7.6382 6.7364 44 1 5.3431 5.9584 7.0066 45 1 7.5147 6.1860 7.5126 46 1 8.6256 7.2485 6.6152 47 1 8.7643 7.8330 9.2420 48 1 10.0293 8.9444 12.1238 49 1 7.3431 5.2220 5.3206 50 1 7.8122 6.5230 4.1830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660966391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:07 Heat of formation + Delta-G solvation = -91.419025 kcal Electronic energy + Delta-G solvation = -28710.970619 eV Core-core repulsion = 24545.929701 eV Total energy + Delta-G solvation = -4165.040918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44274 -39.13432 -38.20747 -37.37649 -35.50628 -34.56608 -33.82734 -32.28622 -31.29686 -30.64284 -29.41782 -28.46271 -26.58089 -24.85431 -24.13389 -23.32555 -21.48888 -21.10161 -20.43170 -20.15921 -19.15551 -17.89343 -17.60723 -17.33241 -16.59128 -16.32913 -15.96561 -15.54656 -15.27417 -15.14819 -14.63603 -14.52592 -14.46204 -13.98655 -13.88976 -13.75924 -13.50400 -13.28378 -13.10192 -12.83274 -12.71333 -12.32113 -12.20529 -12.02812 -11.95466 -11.75014 -11.58809 -11.50014 -11.44971 -11.22963 -11.20802 -10.96737 -10.65101 -10.44081 -10.29155 -10.21364 -9.86690 -9.71414 -9.48846 -9.24759 -8.54167 -8.06022 -7.95036 -6.41743 -3.82487 1.75093 2.38620 2.53022 3.20286 3.25877 3.30383 3.46383 3.90096 4.04791 4.23545 4.33722 4.42633 4.47298 4.51403 4.57463 4.63062 4.73325 4.78009 4.85021 4.94005 5.04348 5.10833 5.17106 5.22597 5.25452 5.30454 5.37511 5.44538 5.48511 5.58552 5.61758 5.64390 5.72080 5.76799 5.89052 5.96487 6.13792 6.14021 6.26033 6.26330 6.32305 6.44023 6.66191 7.06874 7.12949 7.26558 7.55084 8.00772 8.05934 8.61850 9.18254 9.54210 10.06324 10.75981 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.001551 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.464679 B =18047.304137 C =18301.928953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.072 3.928 7 H 0.086 0.914 8 C -0.170 4.170 9 C 0.514 3.486 10 O -0.514 6.514 11 N -0.722 5.722 12 C 0.143 3.857 13 H 0.101 0.899 14 C -0.132 4.132 15 C 0.037 3.963 16 N -0.481 5.481 17 C 0.035 3.965 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.026 3.974 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.398 0.602 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.047 0.953 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 -21.721 -18.379 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.174 4.174 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.010 3.990 7 H 0.103 0.897 8 C -0.228 4.228 9 C 0.299 3.701 10 O -0.388 6.388 11 N -0.376 5.376 12 C 0.038 3.962 13 H 0.119 0.881 14 C -0.171 4.171 15 C -0.090 4.090 16 N -0.206 5.206 17 C -0.096 4.096 18 C 0.230 3.770 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.103 4.103 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.233 0.767 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.777 -19.875 -19.209 29.001 hybrid contribution 0.721 -1.215 1.685 2.199 sum -8.056 -21.090 -17.524 28.579 Atomic orbital electron populations 1.23939 0.95924 1.02174 1.00226 1.22787 0.96031 0.97904 1.00701 1.20639 0.97972 0.96027 0.98389 1.22556 0.93847 0.86152 0.98704 1.88040 1.54245 1.37510 1.47726 1.21883 0.91507 0.93943 0.91644 0.89662 1.22235 0.95275 1.02098 1.03202 1.20349 0.79082 0.90466 0.80239 1.90745 1.44950 1.51843 1.51280 1.46101 1.51113 1.08952 1.31443 1.21726 0.94738 0.80931 0.98811 0.88053 1.22757 0.97436 1.01491 0.95456 1.23186 0.90002 1.00420 0.95428 1.65164 1.01919 1.43139 1.10333 1.22062 0.97380 0.97974 0.92222 1.19666 0.85987 0.87946 0.83447 1.90512 1.32399 1.47636 1.75444 1.41842 1.30090 1.28803 1.19427 1.19655 1.15398 1.07095 1.00714 0.87966 1.25242 0.95766 0.98691 0.98168 1.69601 1.19436 1.37731 1.27666 0.85924 0.78173 0.80948 0.79212 1.19943 1.20996 1.19876 1.23403 0.96733 0.94803 0.95325 0.88256 0.88313 0.87190 0.90376 0.89962 0.92989 0.93016 0.91204 0.90908 0.90842 0.76749 0.90170 0.91266 0.88002 0.94418 0.93223 0.89172 0.77539 0.91857 0.93526 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.00 14.32 29.02 0.42 -0.58 16 2 C -0.16 -0.87 9.52 -36.03 -0.34 -1.21 16 3 C -0.09 -0.63 6.03 -27.88 -0.17 -0.80 16 4 C 0.06 0.45 5.73 37.16 0.21 0.66 16 5 O -0.36 -3.67 9.53 -55.09 -0.52 -4.19 16 6 C 0.07 0.58 3.13 -27.88 -0.09 0.50 16 7 H 0.09 0.49 7.79 -51.93 -0.40 0.09 16 8 C -0.17 -0.99 9.48 37.16 0.35 -0.64 16 9 C 0.51 5.79 7.18 -10.99 -0.08 5.71 16 10 O -0.51 -8.27 16.18 -14.30 -0.23 -8.51 16 11 N -0.72 -6.66 4.99 -52.46 -0.26 -6.92 16 12 C 0.14 1.68 3.38 -66.54 -0.22 1.46 16 13 H 0.10 1.37 7.60 -51.92 -0.39 0.97 16 14 C -0.13 -1.74 6.79 -25.34 -0.17 -1.91 16 15 C 0.04 0.59 5.80 -2.18 -0.01 0.57 16 16 N -0.48 -7.81 5.06 -231.27 -1.17 -8.98 16 17 C 0.04 0.61 5.30 -4.98 -0.03 0.59 16 18 C 0.44 10.38 7.58 -10.99 -0.08 10.29 16 19 O -0.58 -15.49 14.42 5.55 0.08 -15.41 16 20 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 21 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 25 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 29 C 0.03 0.31 6.21 -2.09 -0.01 0.30 16 30 H 0.10 0.42 8.06 -52.48 -0.42 -0.01 16 31 H 0.10 0.53 7.84 -52.48 -0.41 0.12 16 32 H 0.11 0.48 8.06 -52.48 -0.42 0.05 16 33 H 0.08 0.60 7.79 -51.93 -0.40 0.20 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.27 7.87 -51.93 -0.41 -0.14 16 36 H 0.05 0.34 8.09 -51.92 -0.42 -0.08 16 37 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 40 H 0.40 2.47 8.14 -40.82 -0.33 2.14 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 0.84 7.95 -51.93 -0.41 0.42 16 43 H 0.10 1.93 6.91 -51.93 -0.36 1.57 16 44 H 0.04 0.56 7.83 -51.93 -0.41 0.15 16 45 H 0.05 0.76 7.88 -51.93 -0.41 0.36 16 46 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 47 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.05 0.45 7.60 -51.93 -0.39 0.06 16 50 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 414.27 15.07 6.24 6.24 Total: -1.00 -34.50 414.27 -9.06 -43.57 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.37 Total: 9.08 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.47 Total: 7.00 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.77 Total: -53.75 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.68 Total: -28.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.50 -9.06 -43.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660966391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.853 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds