Wall clock time and date at job start Tue Mar 31 2020 22:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00147 * 2 1 4 4 C 1.53006 * 109.46909 * 125.00182 * 3 2 1 5 5 O 1.42899 * 109.47075 * 179.97438 * 4 3 2 6 6 C 1.42898 * 114.00025 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47259 * 330.00253 * 6 5 4 8 8 C 1.53002 * 109.47113 * 90.00268 * 6 5 4 9 9 C 1.50703 * 109.47171 * 210.00101 * 6 5 4 10 10 O 1.21282 * 120.00069 * 354.99878 * 9 6 5 11 11 N 1.34770 * 119.99967 * 175.00411 * 9 6 5 12 12 C 1.46504 * 120.00306 * 180.02562 * 11 9 6 13 13 H 1.09008 * 110.28482 * 325.69934 * 12 11 9 14 14 C 1.54263 * 110.32322 * 87.82147 * 12 11 9 15 15 C 1.54386 * 105.05333 * 118.90201 * 14 12 11 16 16 N 1.48554 * 104.59736 * 23.85167 * 15 14 12 17 17 C 1.46900 * 110.99807 * 200.95790 * 16 15 14 18 18 C 1.50700 * 109.47280 * 290.12774 * 17 16 15 19 19 O 1.21287 * 120.00124 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99938 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99929 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99615 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99954 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00077 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99927 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47272 * 59.99632 * 25 23 21 27 27 H 1.48505 * 109.46999 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47002 * 299.99720 * 25 23 21 29 29 C 1.48719 * 104.29019 * 320.57177 * 16 15 14 30 30 H 1.08003 * 120.00411 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.00094 * 359.97438 * 1 2 3 32 32 H 1.08008 * 119.99807 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47172 * 4.99974 * 3 2 1 34 34 H 1.08998 * 109.47163 * 244.99342 * 3 2 1 35 35 H 1.09000 * 109.47373 * 59.99916 * 4 3 2 36 36 H 1.09007 * 109.46576 * 299.99795 * 4 3 2 37 37 H 1.09000 * 109.46986 * 300.00041 * 8 6 5 38 38 H 1.09002 * 109.47075 * 59.99312 * 8 6 5 39 39 H 1.08996 * 109.47407 * 180.02562 * 8 6 5 40 40 H 0.97005 * 120.00514 * 0.02562 * 11 9 6 41 41 H 1.09002 * 110.32252 * 237.79228 * 14 12 11 42 42 H 1.08996 * 110.32454 * 0.02562 * 14 12 11 43 43 H 1.08997 * 110.40537 * 142.63294 * 15 14 12 44 44 H 1.08997 * 110.40681 * 264.95170 * 15 14 12 45 45 H 1.08998 * 109.47266 * 50.12918 * 17 16 15 46 46 H 1.09000 * 109.46752 * 170.12719 * 17 16 15 47 47 H 0.96999 * 120.00188 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00157 * 179.97438 * 24 23 21 49 49 H 1.09002 * 110.38985 * 280.64336 * 29 16 15 50 50 H 1.08999 * 110.50902 * 158.14902 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 8 3.7500 2.5702 1.1814 6 6 4.6887 2.6993 2.2510 7 1 4.3358 2.1351 3.1143 8 6 6.0472 2.1538 1.8060 9 6 4.8287 4.1528 2.6238 10 8 4.2583 5.0032 1.9739 11 7 5.5879 4.5076 3.6794 12 6 5.7235 5.9205 4.0422 13 1 5.7135 6.5431 3.1475 14 6 4.5884 6.3393 4.9991 15 6 5.2999 6.7832 6.2953 16 7 6.6672 7.1668 5.8593 17 6 7.6073 7.1368 6.9877 18 6 7.2920 8.2660 7.9345 19 8 6.3747 9.0219 7.6928 20 7 8.0300 8.4367 9.0492 21 6 7.7435 9.4645 9.9103 22 1 6.9261 10.1369 9.6955 23 6 8.5040 9.6401 11.0599 24 7 9.4981 8.8216 11.3215 25 14 8.1131 11.0399 12.2334 26 1 6.7259 10.8878 12.7408 27 1 9.0640 11.0099 13.3738 28 1 8.2395 12.3353 11.5183 29 6 7.0266 6.1469 4.8384 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4025 -0.9313 35 1 3.7400 0.5064 1.0921 36 1 2.4771 1.2354 2.1131 37 1 5.9459 1.1026 1.5363 38 1 6.4001 2.7180 0.9427 39 1 6.7631 2.2519 2.6220 40 1 6.0445 3.8275 4.1989 41 1 4.0224 7.1687 4.5749 42 1 3.9305 5.4936 5.1991 43 1 4.7876 7.6382 6.7364 44 1 5.3431 5.9584 7.0066 45 1 7.5147 6.1860 7.5126 46 1 8.6256 7.2485 6.6152 47 1 8.7643 7.8330 9.2420 48 1 10.0293 8.9444 12.1238 49 1 7.3431 5.2220 5.3206 50 1 7.8122 6.5230 4.1830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660966391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:06 Heat of formation + Delta-G solvation = -117.253409 kcal Electronic energy + Delta-G solvation = -28712.090881 eV Core-core repulsion = 24545.929701 eV Total energy + Delta-G solvation = -4166.161180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35862 -40.43201 -39.34626 -38.57251 -36.02704 -35.98259 -35.42435 -33.34033 -32.97354 -31.71534 -29.95650 -29.50232 -28.07926 -26.09919 -25.31087 -23.87386 -22.66801 -21.99008 -21.43735 -20.86009 -20.66123 -19.85148 -18.40539 -18.11084 -17.73797 -17.31558 -16.89796 -16.76397 -16.50032 -16.16750 -15.88901 -15.81792 -15.67384 -15.28567 -14.85590 -14.70996 -14.44952 -14.34469 -14.21171 -13.68365 -13.57058 -13.43771 -13.28381 -13.19308 -12.95738 -12.88488 -12.74975 -12.53294 -12.43257 -12.38678 -12.36888 -12.11540 -12.02892 -11.96953 -11.78175 -11.46738 -10.99307 -10.50076 -10.32901 -10.26943 -10.15225 -9.98891 -9.37886 -8.45169 -5.93381 1.32863 1.40220 1.42220 1.52586 1.54179 1.78198 2.08239 2.29907 2.76498 2.98518 3.21827 3.37034 3.47629 3.68183 3.81092 3.91016 4.01140 4.03610 4.05662 4.15921 4.26000 4.28270 4.30531 4.36511 4.43645 4.46531 4.47488 4.55108 4.67412 4.71128 4.79123 4.80941 4.90504 4.96248 5.03037 5.04545 5.10535 5.13864 5.22982 5.38056 5.42302 5.72219 5.82844 5.85372 5.91198 6.08449 6.10515 6.53596 6.63129 7.15228 7.21363 7.58934 8.15702 8.71928 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.001551 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.464679 B =18047.304137 C =18301.928953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C -0.094 4.094 4 C 0.062 3.938 5 O -0.391 6.391 6 C 0.073 3.927 7 H 0.116 0.884 8 C -0.165 4.165 9 C 0.510 3.490 10 O -0.572 6.572 11 N -0.703 5.703 12 C 0.151 3.849 13 H 0.081 0.919 14 C -0.124 4.124 15 C 0.042 3.958 16 N -0.511 5.511 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.618 6.618 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.035 3.965 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.418 0.582 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.081 0.919 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 -24.603 -18.090 31.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C -0.132 4.132 4 C -0.014 4.014 5 O -0.310 6.310 6 C 0.012 3.988 7 H 0.133 0.867 8 C -0.222 4.222 9 C 0.297 3.703 10 O -0.450 6.450 11 N -0.357 5.357 12 C 0.045 3.955 13 H 0.099 0.901 14 C -0.163 4.163 15 C -0.086 4.086 16 N -0.236 5.236 17 C -0.082 4.082 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.094 0.906 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.093 4.093 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.145 0.855 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.256 0.744 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.132 0.868 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.462 -22.817 -18.906 30.557 hybrid contribution 0.277 -0.319 1.542 1.599 sum -7.185 -23.137 -17.364 29.807 Atomic orbital electron populations 1.24083 0.96119 1.02605 1.00065 1.22846 0.96063 0.97823 1.00801 1.20637 0.97797 0.96244 0.98482 1.22696 0.94185 0.85734 0.98769 1.88008 1.55082 1.39261 1.48698 1.22037 0.92644 0.91685 0.92441 0.86659 1.22239 0.94082 1.02644 1.03279 1.21074 0.77984 0.91610 0.79626 1.90725 1.47362 1.53675 1.53224 1.45869 1.50556 1.08295 1.31026 1.21435 0.94337 0.82169 0.97566 0.90126 1.22651 0.97804 1.01291 0.94578 1.23019 0.90038 0.99017 0.96536 1.65056 1.01839 1.45954 1.10722 1.21923 0.98647 0.96133 0.91504 1.20819 0.84499 0.88659 0.83340 1.90493 1.34004 1.49602 1.76313 1.41898 1.30703 1.28606 1.19933 1.19602 1.15858 1.08404 1.02494 0.90560 1.25964 0.95320 1.00743 0.98972 1.69653 1.19627 1.38555 1.28172 0.85037 0.78196 0.77940 0.77449 1.19822 1.19394 1.19930 1.23416 0.96569 0.95132 0.94145 0.86875 0.88955 0.85463 0.92186 0.90351 0.90637 0.92515 0.89354 0.92776 0.88540 0.74378 0.92116 0.89907 0.92354 0.93083 0.90397 0.86752 0.76934 0.91324 0.90092 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 14.32 67.79 0.97 -0.92 16 2 C -0.16 -1.54 9.52 25.65 0.24 -1.30 16 3 C -0.09 -1.24 6.03 29.85 0.18 -1.06 16 4 C 0.06 0.77 5.73 71.98 0.41 1.18 16 5 O -0.39 -7.66 9.53 -129.99 -1.24 -8.89 16 6 C 0.07 1.02 3.13 29.85 0.09 1.11 16 7 H 0.12 0.90 7.79 -2.39 -0.02 0.88 16 8 C -0.16 -1.40 9.48 71.98 0.68 -0.72 16 9 C 0.51 10.84 7.18 87.66 0.63 11.47 16 10 O -0.57 -18.74 16.18 15.95 0.26 -18.48 16 11 N -0.70 -11.20 4.99 -438.28 -2.19 -13.38 16 12 C 0.15 3.34 3.38 45.89 0.16 3.50 16 13 H 0.08 2.18 7.60 -2.38 -0.02 2.17 16 14 C -0.12 -3.24 6.79 31.49 0.21 -3.02 16 15 C 0.04 1.31 5.80 86.45 0.50 1.81 16 16 N -0.51 -15.91 5.06 -885.62 -4.48 -20.40 16 17 C 0.05 1.60 5.30 85.56 0.45 2.06 16 18 C 0.44 20.68 7.58 87.66 0.66 21.35 16 19 O -0.62 -34.41 14.42 -3.05 -0.04 -34.46 16 20 N -0.57 -29.05 5.29 -306.99 -1.62 -30.67 16 21 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 22 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 24 N -0.92 -48.99 13.05 21.66 0.28 -48.70 16 25 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 29 C 0.04 0.72 6.21 86.42 0.54 1.26 16 30 H 0.11 0.78 8.06 -2.91 -0.02 0.75 16 31 H 0.09 0.99 7.84 -2.91 -0.02 0.97 16 32 H 0.13 0.80 8.06 -2.91 -0.02 0.77 16 33 H 0.06 0.97 7.79 -2.39 -0.02 0.96 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 0.57 7.87 -2.39 -0.02 0.55 16 36 H 0.06 0.63 8.09 -2.38 -0.02 0.61 16 37 H 0.09 0.45 7.87 -2.39 -0.02 0.44 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.10 0.36 7.92 -2.39 -0.02 0.34 16 40 H 0.42 3.40 8.14 -92.70 -0.75 2.65 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 1.91 7.95 -2.39 -0.02 1.89 16 43 H 0.06 2.33 6.91 -2.39 -0.02 2.31 16 44 H 0.05 1.43 7.83 -2.39 -0.02 1.41 16 45 H 0.08 2.13 7.88 -2.39 -0.02 2.11 16 46 H 0.11 3.20 8.13 -2.39 -0.02 3.18 16 47 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 48 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 49 H 0.08 1.16 7.60 -2.39 -0.02 1.14 16 50 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.03 414.27 -0.53 -79.56 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.55 Total: 31.97 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 7.02 Total: 18.52 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -8.01 Total: -113.15 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: -1.02 Total: -61.84 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -79.03 -0.53 -79.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660966391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.689 kcal (2) G-P(sol) polarization free energy of solvation -79.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds