Wall clock time and date at job start Tue Mar 31 2020 22:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47312 * 2 1 4 4 C 1.50703 * 109.47263 * 120.00617 * 2 1 3 5 5 O 1.21281 * 119.99762 * 119.99835 * 4 2 1 6 6 N 1.34775 * 119.99810 * 300.00082 * 4 2 1 7 7 C 1.46493 * 119.99715 * 180.02562 * 6 4 2 8 8 H 1.09002 * 112.85427 * 336.19326 * 7 6 4 9 9 C 1.53777 * 113.69344 * 107.46495 * 7 6 4 10 10 C 1.53777 * 87.08794 * 139.98697 * 9 7 6 11 11 H 1.09006 * 113.68924 * 89.12373 * 10 9 7 12 12 N 1.46895 * 113.62268 * 220.01658 * 10 9 7 13 13 C 1.46893 * 111.00318 * 252.49831 * 12 10 9 14 14 C 1.50708 * 109.47146 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99815 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99719 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99349 * 180.02562 * 16 14 13 18 18 H 1.07991 * 120.00515 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99490 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00236 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47194 * 300.00675 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00238 * 21 19 17 25 25 C 1.53780 * 87.07996 * 334.56904 * 10 9 7 26 26 C 1.53007 * 109.46935 * 240.00546 * 2 1 3 27 27 H 1.09006 * 109.86817 * 298.99211 * 26 2 1 28 28 C 1.54095 * 109.87897 * 59.99662 * 26 2 1 29 29 C 1.54811 * 104.18371 * 121.45374 * 28 26 2 30 30 C 1.54990 * 102.09651 * 20.88402 * 29 28 26 31 31 O 1.43746 * 109.87583 * 177.83161 * 26 2 1 32 32 H 1.09003 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46840 * 299.99205 * 1 2 3 34 34 H 1.08997 * 109.47415 * 59.99655 * 1 2 3 35 35 H 0.97000 * 119.99655 * 359.97438 * 6 4 2 36 36 H 1.09000 * 113.61520 * 25.43940 * 9 7 6 37 37 H 1.09005 * 113.61906 * 254.53979 * 9 7 6 38 38 H 1.00908 * 110.99391 * 16.44993 * 12 10 9 39 39 H 1.09002 * 109.47091 * 59.99845 * 13 12 10 40 40 H 1.09000 * 109.47343 * 299.99463 * 13 12 10 41 41 H 0.96996 * 120.00564 * 359.97438 * 16 14 13 42 42 H 0.97001 * 119.99781 * 179.97438 * 20 19 17 43 43 H 1.09000 * 113.61883 * 139.97788 * 25 10 9 44 44 H 1.09004 * 113.61310 * 270.79697 * 25 10 9 45 45 H 1.08997 * 110.49453 * 240.13107 * 28 26 2 46 46 H 1.09003 * 110.48957 * 2.78010 * 28 26 2 47 47 H 1.09002 * 110.90948 * 139.08263 * 29 28 26 48 48 H 1.09007 * 110.90752 * 262.68271 * 29 28 26 49 49 H 1.08997 * 110.61934 * 81.47463 * 30 29 28 50 50 H 1.09003 * 110.61993 * 204.48180 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1956 -0.9406 3.6505 8 1 2.4393 -1.9868 3.4656 9 6 3.2989 -0.1742 4.3989 10 6 2.6151 -0.6192 5.7024 11 1 2.9726 -1.5774 6.0795 12 7 2.5823 0.4242 6.7359 13 6 3.5245 0.1201 7.8210 14 6 3.4634 1.2104 8.8597 15 8 2.7095 2.1487 8.7103 16 7 4.2473 1.1433 9.9540 17 6 4.1912 2.1349 10.8990 18 1 3.5194 2.9699 10.7665 19 6 4.9990 2.0655 12.0275 20 7 5.8162 1.0491 12.1892 21 14 4.9232 3.4169 13.3149 22 1 5.8752 3.1092 14.4123 23 1 5.2875 4.7149 12.6921 24 1 3.5461 3.5007 13.8641 25 6 1.3129 -0.7237 4.8910 26 6 2.0400 -0.7212 -1.2494 27 1 1.6950 -1.7552 -1.2470 28 6 1.5315 -0.0020 -2.5138 29 6 2.8227 0.3896 -3.2727 30 6 3.8622 -0.5908 -2.6725 31 8 3.4765 -0.6821 -1.2841 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 -0.3634 0.5139 -0.8899 35 1 1.1494 0.5387 2.5435 36 1 3.2694 0.9032 4.2362 37 1 4.2943 -0.5968 4.2617 38 1 2.7695 1.3327 6.3385 39 1 4.5355 0.0589 7.4180 40 1 3.2572 -0.8328 8.2779 41 1 4.8505 0.3931 10.0733 42 1 6.3803 1.0009 12.9768 43 1 0.7047 -1.5902 5.1510 44 1 0.7396 0.2030 4.8641 45 1 0.9235 -0.6757 -3.1175 46 1 0.9628 0.8879 -2.2439 47 1 2.7084 0.2271 -4.3445 48 1 3.0978 1.4236 -3.0646 49 1 3.7935 -1.5658 -3.1549 50 1 4.8700 -0.1858 -2.7649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661648984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:11 Heat of formation + Delta-G solvation = -103.999468 kcal Electronic energy + Delta-G solvation = -28824.612708 eV Core-core repulsion = 24659.026261 eV Total energy + Delta-G solvation = -4165.586446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69779 -39.67706 -38.56178 -37.89240 -34.64244 -34.40172 -33.77673 -32.41987 -32.09206 -31.17021 -28.35843 -26.85825 -25.73924 -25.36946 -24.26131 -23.16074 -22.33676 -21.13715 -20.43876 -19.85166 -19.11044 -17.87241 -17.60831 -16.92393 -16.37096 -16.23420 -15.99239 -15.63615 -15.37667 -14.93823 -14.63977 -14.46363 -14.22412 -14.07195 -13.96645 -13.74234 -13.31468 -13.20992 -12.90834 -12.78362 -12.53375 -12.42586 -12.15017 -12.05734 -11.90592 -11.61842 -11.60091 -11.53493 -11.46589 -11.20364 -11.08472 -11.03090 -10.90625 -10.77875 -10.43278 -10.19970 -9.95515 -9.78460 -9.48843 -9.12226 -8.43136 -8.00229 -7.93433 -6.40257 -3.81206 2.51486 2.97255 3.21091 3.26721 3.31126 3.48040 3.92607 4.07423 4.12004 4.20136 4.33686 4.42905 4.46687 4.51817 4.58251 4.60246 4.74331 4.82950 4.85194 4.91633 4.94618 5.08581 5.16929 5.20628 5.25387 5.29029 5.30383 5.37434 5.42378 5.50608 5.58093 5.64985 5.66657 5.70351 5.71918 5.81899 5.88191 5.95083 6.03227 6.05967 6.29763 6.45963 6.62811 7.26892 7.36825 7.56194 7.67693 8.07528 8.11605 8.62732 9.19019 9.55844 10.07303 10.77357 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027008 B = 0.001550 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.486414 B =18063.045362 C =18241.062766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 H 0.103 0.897 4 C 0.519 3.481 5 O -0.526 6.526 6 N -0.720 5.720 7 C 0.123 3.877 8 H 0.113 0.887 9 C -0.181 4.181 10 C 0.071 3.929 11 H 0.099 0.901 12 N -0.655 5.655 13 C 0.049 3.951 14 C 0.440 3.560 15 O -0.585 6.585 16 N -0.563 5.563 17 C -0.301 4.301 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.284 1.284 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.132 4.132 26 C 0.097 3.903 27 H 0.074 0.926 28 C -0.154 4.154 29 C -0.156 4.156 30 C 0.042 3.958 31 O -0.356 6.356 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.351 0.649 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 -4.813 -30.199 31.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 H 0.121 0.879 4 C 0.304 3.696 5 O -0.401 6.401 6 N -0.371 5.371 7 C 0.018 3.982 8 H 0.131 0.869 9 C -0.222 4.222 10 C -0.041 4.041 11 H 0.117 0.883 12 N -0.286 5.286 13 C -0.083 4.083 14 C 0.226 3.774 15 O -0.469 6.469 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.210 1.210 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.172 4.172 26 C 0.039 3.961 27 H 0.091 0.909 28 C -0.192 4.192 29 C -0.194 4.194 30 C -0.034 4.034 31 O -0.275 6.275 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.171 0.829 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.809 -5.219 -29.675 31.392 hybrid contribution 0.933 0.792 0.227 1.245 sum -7.875 -4.427 -29.448 30.803 Atomic orbital electron populations 1.21813 0.92001 1.03234 1.03244 1.21544 0.97465 1.01367 0.93023 0.87935 1.20455 0.80004 0.84650 0.84455 1.90726 1.36715 1.26108 1.86549 1.45997 1.53769 1.31892 1.05419 1.22372 0.95458 0.97715 0.82682 0.86877 1.24228 0.99298 1.01190 0.97448 1.22817 0.95762 0.96400 0.89129 0.88279 1.60020 1.53482 1.04832 1.10249 1.21725 0.94384 0.99283 0.92938 1.19836 0.84641 0.88616 0.84333 1.90513 1.41927 1.35948 1.78546 1.41861 1.36483 1.23323 1.18323 1.19659 1.21996 1.02677 0.98701 0.87982 1.25265 0.96015 0.98052 0.98587 1.69607 1.24825 1.30167 1.29687 0.85912 0.78127 0.80547 0.79583 1.20982 1.19943 1.19894 1.23465 0.97345 1.02977 0.93372 1.22473 0.82180 0.98746 0.92707 0.90853 1.23087 0.98377 1.01404 0.96302 1.23150 0.95136 1.00683 1.00445 1.23566 0.98979 0.98227 0.82675 1.89052 1.19524 1.94933 1.23958 0.91712 0.91329 0.91013 0.76604 0.89529 0.91112 0.82858 0.93747 0.89549 0.77436 0.91824 0.90702 0.89081 0.90399 0.89982 0.90256 0.90467 0.92256 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 8.83 37.16 0.33 -0.37 16 2 C -0.11 -0.85 2.39 -91.76 -0.22 -1.07 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 4 C 0.52 5.67 7.02 -10.98 -0.08 5.59 16 5 O -0.53 -8.02 14.98 -10.94 -0.16 -8.18 16 6 N -0.72 -6.59 5.25 -53.02 -0.28 -6.87 16 7 C 0.12 1.28 4.24 -67.12 -0.28 1.00 16 8 H 0.11 1.32 7.46 -51.93 -0.39 0.93 16 9 C -0.18 -2.04 7.50 -25.92 -0.19 -2.24 16 10 C 0.07 0.86 4.18 -66.91 -0.28 0.58 16 11 H 0.10 1.15 7.87 -51.93 -0.41 0.74 16 12 N -0.65 -10.42 6.24 -107.14 -0.67 -11.08 16 13 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 14 C 0.44 10.47 7.82 -10.98 -0.09 10.39 16 15 O -0.58 -15.95 15.78 5.55 0.09 -15.86 16 16 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 17 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 21 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.13 -1.36 7.63 -25.92 -0.20 -1.56 16 26 C 0.10 0.82 2.49 -26.16 -0.07 0.76 16 27 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 28 C -0.15 -0.81 6.03 -25.21 -0.15 -0.96 16 29 C -0.16 -0.82 7.15 -24.73 -0.18 -1.00 16 30 C 0.04 0.31 7.72 38.21 0.29 0.61 16 31 O -0.36 -4.01 10.26 -51.73 -0.53 -4.54 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.27 7.56 -51.93 -0.39 -0.12 16 34 H 0.07 0.23 6.53 -51.93 -0.34 -0.11 16 35 H 0.40 2.70 8.15 -40.82 -0.33 2.36 16 36 H 0.09 0.98 7.82 -51.93 -0.41 0.57 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.35 5.77 7.89 -39.29 -0.31 5.46 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.42 8.13 -51.93 -0.42 0.99 16 41 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.33 6.49 -51.93 -0.34 0.00 16 47 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 404.81 15.07 6.10 6.10 Total: -1.00 -34.94 404.81 -9.43 -44.37 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -8.24 Total: 13.88 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.38 Total: 4.47 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.28 Total: -56.39 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.61 Total: -28.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.94 -9.43 -44.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661648984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.632 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds