Wall clock time and date at job start Tue Mar 31 2020 22:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47312 * 2 1 4 4 C 1.50703 * 109.47263 * 120.00617 * 2 1 3 5 5 O 1.21281 * 119.99762 * 119.99835 * 4 2 1 6 6 N 1.34775 * 119.99810 * 300.00082 * 4 2 1 7 7 C 1.46493 * 119.99715 * 180.02562 * 6 4 2 8 8 H 1.09002 * 112.85427 * 336.19326 * 7 6 4 9 9 C 1.53777 * 113.69344 * 107.46495 * 7 6 4 10 10 C 1.53777 * 87.08794 * 139.98697 * 9 7 6 11 11 H 1.09006 * 113.68924 * 89.12373 * 10 9 7 12 12 N 1.46895 * 113.62268 * 220.01658 * 10 9 7 13 13 C 1.46893 * 111.00318 * 252.49831 * 12 10 9 14 14 C 1.50708 * 109.47146 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99815 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99719 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99349 * 180.02562 * 16 14 13 18 18 H 1.07991 * 120.00515 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99490 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00236 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47194 * 300.00675 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00238 * 21 19 17 25 25 C 1.53780 * 87.07996 * 334.56904 * 10 9 7 26 26 C 1.53007 * 109.46935 * 240.00546 * 2 1 3 27 27 H 1.09006 * 109.86817 * 298.99211 * 26 2 1 28 28 C 1.54095 * 109.87897 * 59.99662 * 26 2 1 29 29 C 1.54811 * 104.18371 * 121.45374 * 28 26 2 30 30 C 1.54990 * 102.09651 * 20.88402 * 29 28 26 31 31 O 1.43746 * 109.87583 * 177.83161 * 26 2 1 32 32 H 1.09003 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46840 * 299.99205 * 1 2 3 34 34 H 1.08997 * 109.47415 * 59.99655 * 1 2 3 35 35 H 0.97000 * 119.99655 * 359.97438 * 6 4 2 36 36 H 1.09000 * 113.61520 * 25.43940 * 9 7 6 37 37 H 1.09005 * 113.61906 * 254.53979 * 9 7 6 38 38 H 1.00908 * 110.99391 * 16.44993 * 12 10 9 39 39 H 1.09002 * 109.47091 * 59.99845 * 13 12 10 40 40 H 1.09000 * 109.47343 * 299.99463 * 13 12 10 41 41 H 0.96996 * 120.00564 * 359.97438 * 16 14 13 42 42 H 0.97001 * 119.99781 * 179.97438 * 20 19 17 43 43 H 1.09000 * 113.61883 * 139.97788 * 25 10 9 44 44 H 1.09004 * 113.61310 * 270.79697 * 25 10 9 45 45 H 1.08997 * 110.49453 * 240.13107 * 28 26 2 46 46 H 1.09003 * 110.48957 * 2.78010 * 28 26 2 47 47 H 1.09002 * 110.90948 * 139.08263 * 29 28 26 48 48 H 1.09007 * 110.90752 * 262.68271 * 29 28 26 49 49 H 1.08997 * 110.61934 * 81.47463 * 30 29 28 50 50 H 1.09003 * 110.61993 * 204.48180 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1956 -0.9406 3.6505 8 1 2.4393 -1.9868 3.4656 9 6 3.2989 -0.1742 4.3989 10 6 2.6151 -0.6192 5.7024 11 1 2.9726 -1.5774 6.0795 12 7 2.5823 0.4242 6.7359 13 6 3.5245 0.1201 7.8210 14 6 3.4634 1.2104 8.8597 15 8 2.7095 2.1487 8.7103 16 7 4.2473 1.1433 9.9540 17 6 4.1912 2.1349 10.8990 18 1 3.5194 2.9699 10.7665 19 6 4.9990 2.0655 12.0275 20 7 5.8162 1.0491 12.1892 21 14 4.9232 3.4169 13.3149 22 1 5.8752 3.1092 14.4123 23 1 5.2875 4.7149 12.6921 24 1 3.5461 3.5007 13.8641 25 6 1.3129 -0.7237 4.8910 26 6 2.0400 -0.7212 -1.2494 27 1 1.6950 -1.7552 -1.2470 28 6 1.5315 -0.0020 -2.5138 29 6 2.8227 0.3896 -3.2727 30 6 3.8622 -0.5908 -2.6725 31 8 3.4765 -0.6821 -1.2841 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 -0.3634 0.5139 -0.8899 35 1 1.1494 0.5387 2.5435 36 1 3.2694 0.9032 4.2362 37 1 4.2943 -0.5968 4.2617 38 1 2.7695 1.3327 6.3385 39 1 4.5355 0.0589 7.4180 40 1 3.2572 -0.8328 8.2779 41 1 4.8505 0.3931 10.0733 42 1 6.3803 1.0009 12.9768 43 1 0.7047 -1.5902 5.1510 44 1 0.7396 0.2030 4.8641 45 1 0.9235 -0.6757 -3.1175 46 1 0.9628 0.8879 -2.2439 47 1 2.7084 0.2271 -4.3445 48 1 3.0978 1.4236 -3.0646 49 1 3.7935 -1.5658 -3.1549 50 1 4.8700 -0.1858 -2.7649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661648984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:10 Heat of formation + Delta-G solvation = -130.449336 kcal Electronic energy + Delta-G solvation = -28825.759660 eV Core-core repulsion = 24659.026261 eV Total energy + Delta-G solvation = -4166.733399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48142 -40.53865 -39.99245 -39.16083 -36.11951 -35.47246 -35.06150 -33.45475 -33.15106 -32.69652 -28.91491 -28.38221 -26.63847 -26.35568 -25.65563 -24.04118 -23.01494 -21.81942 -21.42364 -20.99278 -20.50669 -19.87931 -18.32772 -17.93384 -17.46823 -17.03484 -16.90209 -16.78937 -16.42181 -16.34634 -16.02691 -15.79321 -15.52315 -15.14217 -14.80263 -14.55647 -14.41391 -14.28249 -14.15409 -13.52798 -13.46314 -13.43193 -13.28968 -13.13446 -12.93655 -12.82349 -12.60954 -12.43595 -12.38343 -12.17748 -12.13873 -12.10460 -11.96656 -11.87313 -11.75744 -11.49823 -11.49570 -10.66199 -10.60789 -10.33179 -10.01888 -9.99516 -9.24687 -8.46285 -5.95422 1.40317 1.42113 1.53277 1.68499 2.05277 2.19815 2.30415 2.92992 2.98085 3.20839 3.44556 3.57521 3.60572 3.69762 3.73903 3.88200 3.93089 3.99357 4.00707 4.10142 4.20005 4.32850 4.37345 4.44310 4.48211 4.53354 4.60239 4.64848 4.77841 4.79738 4.80434 4.82741 4.87087 4.94713 4.99946 5.01473 5.08613 5.14404 5.15067 5.23740 5.30035 5.40816 5.60550 5.92489 6.05461 6.13785 6.40518 6.59915 6.61475 7.12295 7.32194 7.56170 8.11114 8.70778 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027008 B = 0.001550 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.486414 B =18063.045362 C =18241.062766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.114 0.886 4 C 0.512 3.488 5 O -0.576 6.576 6 N -0.708 5.708 7 C 0.129 3.871 8 H 0.100 0.900 9 C -0.176 4.176 10 C 0.067 3.933 11 H 0.108 0.892 12 N -0.664 5.664 13 C 0.063 3.937 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.336 4.336 18 H 0.080 0.920 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.272 1.272 25 C -0.119 4.119 26 C 0.089 3.911 27 H 0.053 0.947 28 C -0.146 4.146 29 C -0.150 4.150 30 C 0.031 3.969 31 O -0.396 6.396 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.346 0.654 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 -4.125 -31.189 32.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.132 0.868 4 C 0.300 3.700 5 O -0.455 6.455 6 N -0.360 5.360 7 C 0.023 3.977 8 H 0.118 0.882 9 C -0.217 4.217 10 C -0.044 4.044 11 H 0.126 0.874 12 N -0.296 5.296 13 C -0.069 4.069 14 C 0.225 3.775 15 O -0.510 6.510 16 N -0.210 5.210 17 C -0.466 4.466 18 H 0.098 0.902 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.158 4.158 26 C 0.031 3.969 27 H 0.071 0.929 28 C -0.184 4.184 29 C -0.187 4.187 30 C -0.045 4.045 31 O -0.315 6.315 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.251 0.749 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.098 0.902 49 H 0.078 0.922 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.908 -4.535 -30.677 32.555 hybrid contribution 1.290 0.532 0.490 1.479 sum -8.618 -4.003 -30.188 31.648 Atomic orbital electron populations 1.21837 0.89590 1.03328 1.05018 1.21596 0.99270 1.01083 0.90828 0.86772 1.21143 0.79106 0.84100 0.85656 1.90702 1.39049 1.28451 1.87280 1.45911 1.53346 1.32021 1.04716 1.22170 0.95271 0.97051 0.83244 0.88180 1.24172 0.99130 1.01262 0.97128 1.22948 0.97357 0.95644 0.88430 0.87436 1.60059 1.53004 1.05578 1.10919 1.21596 0.96109 0.97283 0.91932 1.20887 0.82921 0.89217 0.84498 1.90480 1.43182 1.37913 1.79386 1.41939 1.37194 1.23130 1.18764 1.19658 1.23045 1.03379 1.00518 0.90209 1.26062 0.95138 1.00187 0.99902 1.69672 1.24891 1.31220 1.30330 0.84970 0.78330 0.77739 0.77176 1.19524 1.19665 1.19675 1.23369 0.96566 1.03620 0.92206 1.22606 0.81228 0.98360 0.94698 0.92877 1.23085 0.98554 1.02010 0.94733 1.23138 0.94153 1.00054 1.01382 1.23762 1.00005 0.99156 0.81581 1.89011 1.21283 1.95125 1.26118 0.92454 0.90083 0.88731 0.74932 0.89416 0.91893 0.83396 0.91833 0.87727 0.77002 0.91302 0.89738 0.88579 0.89103 0.88128 0.88354 0.90187 0.92155 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.83 71.98 0.64 -0.39 16 2 C -0.11 -1.49 2.39 -11.54 -0.03 -1.51 16 3 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.51 11.10 7.02 87.66 0.62 11.71 16 5 O -0.58 -18.19 14.98 12.74 0.19 -18.00 16 6 N -0.71 -12.25 5.25 -440.04 -2.31 -14.56 16 7 C 0.13 2.57 4.24 45.52 0.19 2.76 16 8 H 0.10 2.34 7.46 -2.39 -0.02 2.32 16 9 C -0.18 -3.83 7.50 31.12 0.23 -3.60 16 10 C 0.07 1.53 4.18 45.44 0.19 1.72 16 11 H 0.11 2.30 7.87 -2.38 -0.02 2.28 16 12 N -0.66 -20.41 6.24 -492.87 -3.08 -23.48 16 13 C 0.06 2.17 6.01 85.56 0.51 2.69 16 14 C 0.44 20.92 7.82 87.66 0.69 21.61 16 15 O -0.62 -34.51 15.78 -3.05 -0.05 -34.56 16 16 N -0.57 -29.70 5.29 -306.98 -1.62 -31.32 16 17 C -0.34 -19.26 9.68 84.04 0.81 -18.44 16 18 H 0.08 4.84 7.16 -2.92 -0.02 4.82 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 20 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 21 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C -0.12 -2.23 7.63 31.12 0.24 -1.99 16 26 C 0.09 1.47 2.49 30.97 0.08 1.55 16 27 H 0.05 1.04 8.08 -2.38 -0.02 1.03 16 28 C -0.15 -1.23 6.03 31.58 0.19 -1.04 16 29 C -0.15 -1.30 7.15 31.89 0.23 -1.07 16 30 C 0.03 0.46 7.72 72.66 0.56 1.02 16 31 O -0.40 -9.13 10.26 -133.20 -1.37 -10.49 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.40 7.56 -2.39 -0.02 0.38 16 34 H 0.09 0.29 6.53 -2.39 -0.02 0.27 16 35 H 0.41 4.79 8.15 -92.71 -0.76 4.03 16 36 H 0.09 1.90 7.82 -2.39 -0.02 1.88 16 37 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.35 11.15 7.89 -89.69 -0.71 10.44 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.10 3.25 8.13 -2.39 -0.02 3.23 16 41 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 42 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.10 1.75 8.12 -2.38 -0.02 1.73 16 45 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.10 0.48 6.49 -2.39 -0.02 0.46 16 47 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -77.50 404.81 -1.53 -79.03 By element: Atomic # 1 Polarization: 44.48 SS G_CDS: -1.22 Total: 43.26 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 5.61 Total: 14.77 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -6.73 Total: -119.12 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -1.22 Total: -63.05 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -77.50 -1.53 -79.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661648984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.415 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds