Wall clock time and date at job start Tue Mar 31 2020 23:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47306 * 2 1 4 4 C 1.46762 * 124.34633 * 90.00246 * 3 2 1 5 5 C 1.54481 * 105.47197 * 163.00629 * 4 3 2 6 6 H 1.09004 * 110.96870 * 267.25825 * 5 4 3 7 7 C 1.50697 * 110.97079 * 143.53288 * 5 4 3 8 8 O 1.21287 * 120.00040 * 0.02562 * 7 5 4 9 9 N 1.34780 * 120.00396 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00204 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.46860 * 176.00976 * 10 9 7 12 12 N 1.46501 * 109.54381 * 54.90508 * 11 10 9 13 13 C 1.36930 * 120.00127 * 62.95499 * 12 11 10 14 14 H 1.07996 * 120.00232 * 353.45978 * 13 12 11 15 15 C 1.38819 * 119.99882 * 173.45634 * 13 12 11 16 16 N 1.31619 * 119.99865 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99682 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47193 * 90.00361 * 17 15 13 19 19 H 1.48503 * 109.47047 * 209.99980 * 17 15 13 20 20 H 1.48496 * 109.47286 * 329.99840 * 17 15 13 21 21 C 1.53183 * 109.54152 * 175.07951 * 11 10 9 22 22 C 1.53283 * 109.06203 * 176.85218 * 21 11 10 23 23 O 1.42903 * 109.46054 * 302.44463 * 22 21 11 24 24 C 1.42902 * 114.09870 * 61.15924 * 23 22 21 25 25 C 1.53087 * 109.41580 * 298.84267 * 24 23 22 26 26 C 1.54626 * 101.76761 * 25.41479 * 5 4 3 27 27 C 1.34417 * 124.34949 * 270.02333 * 3 2 1 28 28 O 1.21281 * 124.94466 * 0.38878 * 27 3 2 29 29 H 1.09001 * 109.47252 * 299.99994 * 1 2 3 30 30 H 1.08998 * 109.47457 * 59.99875 * 1 2 3 31 31 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47252 * 240.00005 * 2 1 3 33 33 H 1.09006 * 109.47144 * 120.00254 * 2 1 3 34 34 H 1.08998 * 110.25117 * 44.00213 * 4 3 2 35 35 H 1.08998 * 110.32030 * 282.04520 * 4 3 2 36 36 H 0.97000 * 119.99696 * 0.02562 * 9 7 5 37 37 H 1.08994 * 109.47283 * 56.00615 * 10 9 7 38 38 H 1.09002 * 109.46935 * 296.00781 * 10 9 7 39 39 H 0.97006 * 119.99540 * 242.94943 * 12 11 10 40 40 H 0.96998 * 120.00150 * 0.02562 * 16 15 13 41 41 H 1.08993 * 109.52522 * 296.84037 * 21 11 10 42 42 H 1.08998 * 109.52082 * 57.03079 * 21 11 10 43 43 H 1.09001 * 109.45492 * 182.45374 * 22 21 11 44 44 H 1.08998 * 109.46961 * 62.44718 * 22 21 11 45 45 H 1.09004 * 109.48297 * 178.85864 * 24 23 22 46 46 H 1.09004 * 109.49058 * 58.82809 * 24 23 22 47 47 H 1.09002 * 109.52581 * 297.70190 * 25 24 23 48 48 H 1.08998 * 109.52429 * 177.50974 * 25 24 23 49 49 H 1.08996 * 110.48946 * 93.87639 * 26 5 4 50 50 H 1.08995 * 110.48739 * 216.52717 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1740 3.3443 0.7487 6 1 4.2329 3.1040 0.8451 7 6 2.8368 4.5989 1.5125 8 8 1.9709 4.5777 2.3614 9 7 3.4982 5.7442 1.2530 10 6 3.1700 6.9639 1.9951 11 6 4.1258 8.0849 1.5821 12 7 4.0818 8.2554 0.1277 13 6 2.9181 8.6422 -0.4815 14 1 2.0073 8.7194 0.0936 15 6 2.9091 8.9353 -1.8384 16 7 4.0191 8.8408 -2.5394 17 14 1.3214 9.4623 -2.6695 18 1 1.1947 10.9404 -2.6026 19 1 1.3396 9.0309 -4.0903 20 1 0.1678 8.8347 -1.9763 21 6 3.7082 9.3915 2.2639 22 6 4.7176 10.4880 1.9056 23 8 6.0271 10.0789 2.3059 24 6 6.4877 8.8877 1.6647 25 6 5.5516 7.7276 2.0133 26 6 2.7687 3.4757 -0.7377 27 6 2.2707 2.0964 -1.1098 28 8 2.1210 1.6945 -2.2442 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.8327 1.5531 1.9382 35 1 1.3644 2.5304 1.6446 36 1 4.1911 5.7611 0.5743 37 1 3.2699 6.7767 3.0642 38 1 2.1449 7.2600 1.7724 39 1 4.8772 8.0942 -0.4038 40 1 4.8433 8.5661 -2.1080 41 1 2.7154 9.6809 1.9197 42 1 3.6932 9.2497 3.3446 43 1 4.4510 11.4099 2.4226 44 1 4.7030 10.6575 0.8290 45 1 7.4961 8.6568 2.0080 46 1 6.4962 9.0360 0.5849 47 1 5.5736 7.5523 3.0889 48 1 5.8757 6.8281 1.4900 49 1 1.9735 4.2122 -0.8527 50 1 3.6317 3.7466 -1.3460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671934809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:53 Heat of formation + Delta-G solvation = -106.391424 kcal Electronic energy + Delta-G solvation = -31353.794634 eV Core-core repulsion = 27188.104465 eV Total energy + Delta-G solvation = -4165.690169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85053 -39.67657 -38.79435 -36.42219 -35.93004 -34.08260 -33.72565 -32.38496 -30.77200 -29.94041 -28.96361 -27.82991 -26.94790 -24.15401 -23.98584 -23.13738 -22.84753 -21.83939 -19.99940 -19.44005 -18.94740 -17.68922 -17.18191 -16.84250 -16.08875 -15.89145 -15.75430 -15.46583 -15.39304 -15.01822 -14.69506 -14.27889 -14.10615 -13.98949 -13.75028 -13.61912 -13.54818 -13.52450 -13.00260 -12.93414 -12.38736 -12.33871 -12.16248 -12.08321 -11.85697 -11.71616 -11.54198 -11.40766 -11.25310 -10.94909 -10.87845 -10.67451 -10.21829 -10.11010 -10.03745 -9.95059 -9.58437 -9.34222 -9.24507 -8.88285 -8.85410 -8.66520 -7.23000 -6.21813 -3.26884 2.52959 2.73227 2.81128 3.41303 3.46579 3.49222 3.63347 4.16327 4.25830 4.30258 4.54565 4.71429 4.75273 4.87925 4.98164 5.00840 5.10893 5.13978 5.16012 5.24014 5.31093 5.36502 5.43005 5.47865 5.53275 5.57766 5.63417 5.63696 5.74896 5.82904 5.86487 5.94113 5.96817 5.97773 6.08104 6.16493 6.26947 6.40383 6.41344 6.43317 6.61496 6.62804 6.80341 6.96893 7.59731 7.69573 7.79016 8.09406 8.41386 8.61619 9.02579 9.89334 10.03037 11.24662 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.003631 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.642808 B = 7708.715697 C = 9235.961782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.622 5.622 4 C 0.119 3.881 5 C -0.123 4.123 6 H 0.113 0.887 7 C 0.521 3.479 8 O -0.550 6.550 9 N -0.695 5.695 10 C 0.118 3.882 11 C 0.195 3.805 12 N -0.724 5.724 13 C -0.329 4.329 14 H 0.065 0.935 15 C -0.034 4.034 16 N -0.938 5.938 17 Si 1.074 2.926 18 H -0.295 1.295 19 H -0.288 1.288 20 H -0.295 1.295 21 C -0.151 4.151 22 C 0.070 3.930 23 O -0.392 6.392 24 C 0.067 3.933 25 C -0.152 4.152 26 C -0.143 4.143 27 C 0.522 3.478 28 O -0.530 6.530 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.403 0.597 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.367 0.633 40 H 0.255 0.745 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.114 0.886 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 -11.502 10.352 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.357 5.357 4 C -0.004 4.004 5 C -0.145 4.145 6 H 0.132 0.868 7 C 0.306 3.694 8 O -0.429 6.429 9 N -0.344 5.344 10 C -0.008 4.008 11 C 0.102 3.898 12 N -0.367 5.367 13 C -0.460 4.460 14 H 0.083 0.917 15 C -0.233 4.233 16 N -0.583 5.583 17 Si 0.905 3.095 18 H -0.223 1.223 19 H -0.214 1.214 20 H -0.222 1.222 21 C -0.191 4.191 22 C -0.006 4.006 23 O -0.311 6.311 24 C -0.010 4.010 25 C -0.191 4.191 26 C -0.184 4.184 27 C 0.310 3.690 28 O -0.406 6.406 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.238 0.762 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.132 0.868 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.093 -11.187 9.128 14.438 hybrid contribution 0.909 -0.583 0.854 1.376 sum 0.816 -11.770 9.982 15.454 Atomic orbital electron populations 1.22171 0.95769 1.02235 1.02775 1.21325 0.94492 0.81015 1.02993 1.48370 1.66164 1.13855 1.07301 1.21952 1.00623 0.91050 0.86772 1.22206 1.02262 0.94387 0.95640 0.86850 1.19934 0.81791 0.84512 0.83184 1.90678 1.32278 1.85589 1.34320 1.45713 1.39451 1.08826 1.40430 1.21840 1.00633 0.84347 0.93990 1.19761 0.91645 0.92156 0.86193 1.42501 1.11865 1.82730 0.99644 1.19867 0.88208 1.43368 0.94558 0.91712 1.25627 1.04139 1.00156 0.93356 1.70897 0.99567 1.50025 1.37768 0.83302 0.73937 0.76081 0.76160 1.22305 1.21405 1.22183 1.22456 1.00780 0.96906 0.98951 1.22481 0.81417 0.95946 1.00777 1.87809 1.33082 1.42764 1.67445 1.22441 0.96479 0.84618 0.97487 1.22376 0.96213 0.98839 1.01636 1.22343 1.04873 0.96447 0.94711 1.20829 0.76606 0.87260 0.84346 1.90726 1.53661 1.75117 1.21071 0.92229 0.92139 0.91486 0.90038 0.90366 0.90015 0.89030 0.76176 0.92570 0.91512 0.79864 0.93422 0.90285 0.92615 0.90232 0.91460 0.89942 0.92691 0.91054 0.91387 0.86816 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 37.15 0.38 -1.18 16 2 C 0.12 1.16 6.65 -4.04 -0.03 1.13 16 3 N -0.62 -7.20 2.93 -172.41 -0.51 -7.71 16 4 C 0.12 1.26 6.71 -3.12 -0.02 1.24 16 5 C -0.12 -1.38 3.54 -90.14 -0.32 -1.70 16 6 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 7 C 0.52 7.56 7.06 -10.98 -0.08 7.48 16 8 O -0.55 -9.64 15.50 5.55 0.09 -9.56 16 9 N -0.70 -10.30 5.12 -60.30 -0.31 -10.61 16 10 C 0.12 1.93 4.38 -4.05 -0.02 1.92 16 11 C 0.19 3.19 0.41 -131.63 -0.05 3.14 16 12 N -0.72 -14.48 3.59 -47.06 -0.17 -14.65 16 13 C -0.33 -7.86 8.67 -15.06 -0.13 -7.99 16 14 H 0.06 1.59 6.78 -52.49 -0.36 1.24 16 15 C -0.03 -0.89 5.50 -17.43 -0.10 -0.98 16 16 N -0.94 -26.17 13.70 55.49 0.76 -25.41 16 17 Si 1.07 24.64 29.92 -169.99 -5.09 19.55 16 18 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.15 -2.49 4.79 -26.49 -0.13 -2.62 16 22 C 0.07 1.18 6.68 37.30 0.25 1.43 16 23 O -0.39 -6.55 10.77 -35.23 -0.38 -6.93 16 24 C 0.07 0.99 6.67 37.20 0.25 1.23 16 25 C -0.15 -2.13 4.79 -26.59 -0.13 -2.25 16 26 C -0.14 -1.87 6.41 -26.74 -0.17 -2.04 16 27 C 0.52 7.55 8.02 -10.86 -0.09 7.46 16 28 O -0.53 -9.62 17.60 5.56 0.10 -9.53 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.12 6.96 -51.93 -0.36 0.75 16 36 H 0.40 5.74 7.43 -40.82 -0.30 5.44 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.28 7.49 -51.93 -0.39 0.89 16 39 H 0.37 7.71 5.69 -40.82 -0.23 7.48 16 40 H 0.25 6.89 6.79 -40.82 -0.28 6.61 16 41 H 0.08 1.42 7.17 -51.93 -0.37 1.05 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.33 7.75 -51.93 -0.40 0.93 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.90 7.16 -51.93 -0.37 0.53 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.07 0.86 7.38 -51.93 -0.38 0.48 16 49 H 0.11 1.68 7.89 -51.93 -0.41 1.27 16 50 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 395.09 15.07 5.95 5.95 Total: -1.00 -31.26 395.09 -8.07 -39.32 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -8.14 Total: 13.28 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.38 Total: 6.28 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.22 Total: -58.38 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.20 Total: -26.01 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.09 Total: 19.55 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.26 -8.07 -39.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671934809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.068 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds