Wall clock time and date at job start Tue Mar 31 2020 23:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47306 * 2 1 4 4 C 1.46762 * 124.34633 * 90.00246 * 3 2 1 5 5 C 1.54481 * 105.47197 * 163.00629 * 4 3 2 6 6 H 1.09004 * 110.96870 * 267.25825 * 5 4 3 7 7 C 1.50697 * 110.97079 * 143.53288 * 5 4 3 8 8 O 1.21287 * 120.00040 * 0.02562 * 7 5 4 9 9 N 1.34780 * 120.00396 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00204 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.46860 * 176.00976 * 10 9 7 12 12 N 1.46501 * 109.54381 * 54.90508 * 11 10 9 13 13 C 1.36930 * 120.00127 * 62.95499 * 12 11 10 14 14 H 1.07996 * 120.00232 * 353.45978 * 13 12 11 15 15 C 1.38819 * 119.99882 * 173.45634 * 13 12 11 16 16 N 1.31619 * 119.99865 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99682 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47193 * 90.00361 * 17 15 13 19 19 H 1.48503 * 109.47047 * 209.99980 * 17 15 13 20 20 H 1.48496 * 109.47286 * 329.99840 * 17 15 13 21 21 C 1.53183 * 109.54152 * 175.07951 * 11 10 9 22 22 C 1.53283 * 109.06203 * 176.85218 * 21 11 10 23 23 O 1.42903 * 109.46054 * 302.44463 * 22 21 11 24 24 C 1.42902 * 114.09870 * 61.15924 * 23 22 21 25 25 C 1.53087 * 109.41580 * 298.84267 * 24 23 22 26 26 C 1.54626 * 101.76761 * 25.41479 * 5 4 3 27 27 C 1.34417 * 124.34949 * 270.02333 * 3 2 1 28 28 O 1.21281 * 124.94466 * 0.38878 * 27 3 2 29 29 H 1.09001 * 109.47252 * 299.99994 * 1 2 3 30 30 H 1.08998 * 109.47457 * 59.99875 * 1 2 3 31 31 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47252 * 240.00005 * 2 1 3 33 33 H 1.09006 * 109.47144 * 120.00254 * 2 1 3 34 34 H 1.08998 * 110.25117 * 44.00213 * 4 3 2 35 35 H 1.08998 * 110.32030 * 282.04520 * 4 3 2 36 36 H 0.97000 * 119.99696 * 0.02562 * 9 7 5 37 37 H 1.08994 * 109.47283 * 56.00615 * 10 9 7 38 38 H 1.09002 * 109.46935 * 296.00781 * 10 9 7 39 39 H 0.97006 * 119.99540 * 242.94943 * 12 11 10 40 40 H 0.96998 * 120.00150 * 0.02562 * 16 15 13 41 41 H 1.08993 * 109.52522 * 296.84037 * 21 11 10 42 42 H 1.08998 * 109.52082 * 57.03079 * 21 11 10 43 43 H 1.09001 * 109.45492 * 182.45374 * 22 21 11 44 44 H 1.08998 * 109.46961 * 62.44718 * 22 21 11 45 45 H 1.09004 * 109.48297 * 178.85864 * 24 23 22 46 46 H 1.09004 * 109.49058 * 58.82809 * 24 23 22 47 47 H 1.09002 * 109.52581 * 297.70190 * 25 24 23 48 48 H 1.08998 * 109.52429 * 177.50974 * 25 24 23 49 49 H 1.08996 * 110.48946 * 93.87639 * 26 5 4 50 50 H 1.08995 * 110.48739 * 216.52717 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1740 3.3443 0.7487 6 1 4.2329 3.1040 0.8451 7 6 2.8368 4.5989 1.5125 8 8 1.9709 4.5777 2.3614 9 7 3.4982 5.7442 1.2530 10 6 3.1700 6.9639 1.9951 11 6 4.1258 8.0849 1.5821 12 7 4.0818 8.2554 0.1277 13 6 2.9181 8.6422 -0.4815 14 1 2.0073 8.7194 0.0936 15 6 2.9091 8.9353 -1.8384 16 7 4.0191 8.8408 -2.5394 17 14 1.3214 9.4623 -2.6695 18 1 1.1947 10.9404 -2.6026 19 1 1.3396 9.0309 -4.0903 20 1 0.1678 8.8347 -1.9763 21 6 3.7082 9.3915 2.2639 22 6 4.7176 10.4880 1.9056 23 8 6.0271 10.0789 2.3059 24 6 6.4877 8.8877 1.6647 25 6 5.5516 7.7276 2.0133 26 6 2.7687 3.4757 -0.7377 27 6 2.2707 2.0964 -1.1098 28 8 2.1210 1.6945 -2.2442 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.8327 1.5531 1.9382 35 1 1.3644 2.5304 1.6446 36 1 4.1911 5.7611 0.5743 37 1 3.2699 6.7767 3.0642 38 1 2.1449 7.2600 1.7724 39 1 4.8772 8.0942 -0.4038 40 1 4.8433 8.5661 -2.1080 41 1 2.7154 9.6809 1.9197 42 1 3.6932 9.2497 3.3446 43 1 4.4510 11.4099 2.4226 44 1 4.7030 10.6575 0.8290 45 1 7.4961 8.6568 2.0080 46 1 6.4962 9.0360 0.5849 47 1 5.5736 7.5523 3.0889 48 1 5.8757 6.8281 1.4900 49 1 1.9735 4.2122 -0.8527 50 1 3.6317 3.7466 -1.3460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671934809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:52 Heat of formation + Delta-G solvation = -128.340923 kcal Electronic energy + Delta-G solvation = -31354.746436 eV Core-core repulsion = 27188.104465 eV Total energy + Delta-G solvation = -4166.641971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93313 -40.97134 -40.03692 -37.62561 -37.27366 -35.37154 -34.94870 -33.87380 -32.03828 -30.87551 -30.65077 -28.88054 -28.19282 -25.82905 -25.08428 -24.40982 -23.93945 -23.07063 -21.17631 -20.49857 -20.36453 -19.10847 -18.63280 -17.86447 -17.42450 -17.10655 -17.02272 -16.74559 -16.50767 -16.23201 -16.06307 -15.66382 -15.63156 -15.23152 -15.04604 -14.86241 -14.57975 -14.47490 -14.34774 -14.08323 -13.64659 -13.38836 -13.34896 -13.26352 -13.01499 -12.95885 -12.71103 -12.54358 -12.45157 -12.40283 -12.17043 -12.02677 -11.95840 -11.60584 -11.39629 -11.20312 -11.02280 -10.98381 -10.78738 -10.37570 -9.97221 -9.81668 -9.04511 -8.24979 -5.22360 1.39545 1.56736 1.58121 1.64293 1.77619 1.86347 2.27482 2.70299 3.01075 3.16014 3.32773 3.46468 3.62003 3.73664 3.82336 3.82692 3.91922 4.07978 4.09456 4.14558 4.17814 4.21949 4.40520 4.43959 4.50300 4.55301 4.55983 4.69936 4.70726 4.74474 4.76745 4.77939 4.83136 4.89045 4.91137 4.99387 5.04992 5.15836 5.22743 5.23996 5.26411 5.52454 5.52893 5.74548 5.96611 6.30393 6.58491 6.63343 7.01226 7.16403 7.22832 8.05752 8.17025 9.25865 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.003631 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.642808 B = 7708.715697 C = 9235.961782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.612 5.612 4 C 0.121 3.879 5 C -0.108 4.108 6 H 0.152 0.848 7 C 0.522 3.478 8 O -0.579 6.579 9 N -0.694 5.694 10 C 0.127 3.873 11 C 0.192 3.808 12 N -0.724 5.724 13 C -0.299 4.299 14 H 0.057 0.943 15 C -0.088 4.088 16 N -0.975 5.975 17 Si 1.106 2.894 18 H -0.290 1.290 19 H -0.301 1.301 20 H -0.285 1.285 21 C -0.149 4.149 22 C 0.076 3.924 23 O -0.397 6.397 24 C 0.063 3.937 25 C -0.143 4.143 26 C -0.141 4.141 27 C 0.515 3.485 28 O -0.576 6.576 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.407 0.593 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.364 0.636 40 H 0.249 0.751 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.030 0.970 45 H 0.114 0.886 46 H 0.033 0.967 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -13.073 12.987 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.345 5.345 4 C -0.002 4.002 5 C -0.130 4.130 6 H 0.169 0.831 7 C 0.308 3.692 8 O -0.460 6.460 9 N -0.343 5.343 10 C 0.000 4.000 11 C 0.101 3.899 12 N -0.367 5.367 13 C -0.431 4.431 14 H 0.075 0.925 15 C -0.281 4.281 16 N -0.623 5.623 17 Si 0.936 3.064 18 H -0.217 1.217 19 H -0.228 1.228 20 H -0.211 1.211 21 C -0.189 4.189 22 C -0.001 4.001 23 O -0.316 6.316 24 C -0.014 4.014 25 C -0.181 4.181 26 C -0.182 4.182 27 C 0.303 3.697 28 O -0.456 6.456 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.243 0.757 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.197 0.803 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.049 0.951 45 H 0.131 0.869 46 H 0.051 0.949 47 H 0.110 0.890 48 H 0.103 0.897 49 H 0.108 0.892 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.956 -12.771 11.841 17.442 hybrid contribution 0.550 -0.112 0.170 0.586 sum 1.506 -12.883 12.011 17.678 Atomic orbital electron populations 1.22143 0.95692 1.03392 1.01337 1.21597 0.94561 0.79865 1.04428 1.48489 1.64726 1.14552 1.06779 1.22054 1.00264 0.91163 0.86676 1.22207 1.04563 0.92901 0.93312 0.83085 1.20412 0.80872 0.85125 0.82751 1.90671 1.33399 1.86108 1.35831 1.45704 1.39646 1.08570 1.40384 1.21634 0.98549 0.84815 0.94970 1.19967 0.93803 0.92242 0.83896 1.42513 1.10465 1.82343 1.01354 1.19939 0.89078 1.39982 0.94056 0.92522 1.26389 1.05289 1.01761 0.94697 1.70959 0.99981 1.53131 1.38267 0.82830 0.72559 0.76148 0.74866 1.21739 1.22834 1.21090 1.22431 0.99511 0.96654 1.00312 1.22370 0.81963 0.96992 0.98727 1.87809 1.32686 1.43733 1.67387 1.22603 0.98244 0.84216 0.96304 1.22327 0.93695 0.99104 1.02958 1.22266 1.04317 0.95250 0.96353 1.21031 0.76476 0.87842 0.84333 1.90696 1.55894 1.76071 1.22916 0.92089 0.95038 0.89109 0.90797 0.86678 0.86307 0.90582 0.75676 0.91089 0.94841 0.80278 0.94034 0.92298 0.90248 0.88428 0.95113 0.86852 0.94894 0.89036 0.89674 0.89157 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 10.24 71.98 0.74 -2.09 16 2 C 0.12 1.92 6.65 86.38 0.57 2.50 16 3 N -0.61 -13.11 2.93 -817.98 -2.40 -15.51 16 4 C 0.12 2.21 6.71 86.83 0.58 2.79 16 5 C -0.11 -2.16 3.54 -10.48 -0.04 -2.19 16 6 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 7 C 0.52 14.20 7.06 87.66 0.62 14.81 16 8 O -0.58 -19.49 15.50 -3.05 -0.05 -19.54 16 9 N -0.69 -19.43 5.12 -463.07 -2.37 -21.80 16 10 C 0.13 3.98 4.38 86.38 0.38 4.36 16 11 C 0.19 6.03 0.41 3.72 0.00 6.03 16 12 N -0.72 -28.94 3.59 -302.80 -1.09 -30.02 16 13 C -0.30 -14.42 8.67 84.04 0.73 -13.69 16 14 H 0.06 2.82 6.78 -2.91 -0.02 2.80 16 15 C -0.09 -4.67 5.50 84.86 0.47 -4.20 16 16 N -0.98 -55.69 13.70 21.65 0.30 -55.40 16 17 Si 1.11 50.89 29.92 68.60 2.05 52.94 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 21 C -0.15 -4.74 4.79 30.75 0.15 -4.59 16 22 C 0.08 2.50 6.68 72.08 0.48 2.98 16 23 O -0.40 -12.49 10.77 -148.98 -1.60 -14.09 16 24 C 0.06 1.72 6.67 72.01 0.48 2.20 16 25 C -0.14 -3.56 4.79 30.68 0.15 -3.42 16 26 C -0.14 -3.61 6.41 30.59 0.20 -3.41 16 27 C 0.51 14.76 8.02 87.90 0.71 15.46 16 28 O -0.58 -21.41 17.60 -3.03 -0.05 -21.47 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.38 7.93 -2.39 -0.02 1.36 16 33 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.71 6.96 -2.39 -0.02 1.69 16 36 H 0.41 10.86 7.43 -92.71 -0.69 10.17 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 38 H 0.03 1.27 7.49 -2.39 -0.02 1.26 16 39 H 0.36 15.34 5.69 -92.70 -0.53 14.81 16 40 H 0.25 13.83 6.79 -92.71 -0.63 13.20 16 41 H 0.06 2.10 7.17 -2.39 -0.02 2.09 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.03 1.23 7.75 -2.39 -0.02 1.21 16 45 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.03 1.05 7.16 -2.38 -0.02 1.03 16 47 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.08 1.87 7.38 -2.39 -0.02 1.85 16 49 H 0.09 2.74 7.89 -2.39 -0.02 2.73 16 50 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -70.41 395.09 0.87 -69.54 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.12 Total: 37.81 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 6.21 Total: 17.54 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.56 Total: -122.73 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -1.70 Total: -55.10 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.05 Total: 52.94 kcal Total: -70.41 0.87 -69.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671934809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.804 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds