Wall clock time and date at job start Tue Mar 31 2020 22:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00206 * 2 1 4 4 H 1.08997 * 109.46651 * 330.00563 * 3 2 1 5 5 C 1.53000 * 109.46553 * 90.00091 * 3 2 1 6 6 C 1.50698 * 109.47524 * 210.00094 * 3 2 1 7 7 O 1.21286 * 119.99543 * 352.76638 * 6 3 2 8 8 N 1.34776 * 120.00130 * 172.75994 * 6 3 2 9 9 C 1.47877 * 125.74342 * 4.88322 * 8 6 3 10 10 C 1.54127 * 103.88594 * 204.55471 * 9 8 6 11 11 H 1.08998 * 110.15134 * 76.46952 * 10 9 8 12 12 C 1.51181 * 112.23671 * 199.22256 * 10 9 8 13 13 C 1.52873 * 111.19718 * 63.79911 * 12 10 9 14 14 N 1.47182 * 108.19796 * 58.62750 * 13 12 10 15 15 C 1.46901 * 110.99488 * 171.12381 * 14 13 12 16 16 C 1.50700 * 109.47364 * 293.83450 * 15 14 13 17 17 O 1.21288 * 119.99930 * 2.12749 * 16 15 14 18 18 N 1.34776 * 120.00170 * 182.11586 * 16 15 14 19 19 C 1.37094 * 120.00272 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99747 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00264 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99934 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46919 * 59.99972 * 23 21 19 25 25 H 1.48501 * 109.46998 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47026 * 299.99981 * 23 21 19 27 27 C 1.46449 * 110.11146 * 294.44753 * 14 13 12 28 28 C 1.52988 * 111.04616 * 63.85619 * 27 14 13 29 29 H 1.08996 * 112.18148 * 73.91572 * 28 27 14 30 30 C 1.47342 * 125.74572 * 184.90574 * 8 6 3 31 31 H 1.09001 * 109.46827 * 299.99242 * 1 2 3 32 32 H 1.08993 * 109.47474 * 59.99725 * 1 2 3 33 33 H 1.08998 * 109.46983 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47198 * 296.10086 * 5 3 2 35 35 H 1.08997 * 109.47369 * 56.10465 * 5 3 2 36 36 H 1.09006 * 109.46526 * 176.10600 * 5 3 2 37 37 H 1.09001 * 110.54606 * 323.19373 * 9 8 6 38 38 H 1.09000 * 110.54571 * 85.84366 * 9 8 6 39 39 H 1.09000 * 109.12477 * 303.37802 * 12 10 9 40 40 H 1.09002 * 109.13045 * 184.22700 * 12 10 9 41 41 H 1.09004 * 109.72136 * 178.30590 * 13 12 10 42 42 H 1.08999 * 109.71867 * 298.95414 * 13 12 10 43 43 H 1.08994 * 109.47215 * 53.84060 * 15 14 13 44 44 H 1.09004 * 109.46604 * 173.83927 * 15 14 13 45 45 H 0.97003 * 119.99848 * 0.02562 * 18 16 15 46 46 H 0.96998 * 119.99835 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.16476 * 184.25922 * 27 14 13 48 48 H 1.09000 * 109.16166 * 303.44910 * 27 14 13 49 49 H 1.08998 * 109.99137 * 61.41427 * 30 8 6 50 50 H 1.09000 * 110.02934 * 300.10498 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 -0.5137 5 6 2.2177 1.7712 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.8088 0.2005 -1.0554 8 7 4.0041 2.4085 -0.9624 9 6 3.6022 3.7586 -0.5122 10 6 4.2670 4.7022 -1.5336 11 1 3.7105 4.6932 -2.4707 12 6 4.3784 6.1183 -1.0160 13 6 5.2921 6.1892 0.2076 14 7 6.6176 5.6788 -0.1782 15 6 7.6020 5.9125 0.8868 16 6 7.8245 7.3941 1.0491 17 8 7.1939 8.1796 0.3735 18 7 8.7239 7.8463 1.9452 19 6 8.9260 9.1942 2.0932 20 1 8.3640 9.8937 1.4920 21 6 9.8536 9.6604 3.0166 22 7 10.5378 8.8093 3.7477 23 14 10.1284 11.4971 3.2188 24 1 8.8570 12.1455 3.6288 25 1 11.1612 11.7314 4.2597 26 1 10.5849 12.0742 1.9290 27 6 6.5317 4.2551 -0.5106 28 6 5.6422 4.0294 -1.7346 29 1 6.1314 4.3324 -2.6603 30 6 5.2543 2.5254 -1.7333 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2505 1.8678 1.9358 35 1 2.8264 1.0413 1.9761 36 1 2.7239 2.7366 1.4433 37 1 2.5178 3.8646 -0.5419 38 1 3.9772 3.9542 0.4924 39 1 3.3864 6.4776 -0.7422 40 1 4.7843 6.7551 -1.8021 41 1 5.3792 7.2230 0.5422 42 1 4.8811 5.5760 1.0096 43 1 7.2302 5.4961 1.8230 44 1 8.5435 5.4304 0.6234 45 1 9.2284 7.2181 2.4854 46 1 11.1851 9.1348 4.3926 47 1 7.5318 3.8757 -0.7201 48 1 6.1154 3.7139 0.3390 49 1 5.0957 2.1806 -2.7551 50 1 6.0411 1.9381 -1.2599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689213877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:59 Heat of formation + Delta-G solvation = -98.675217 kcal Electronic energy + Delta-G solvation = -30545.709753 eV Core-core repulsion = 26380.354184 eV Total energy + Delta-G solvation = -4165.355570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05048 -39.51008 -38.28450 -37.60094 -35.92143 -33.91932 -32.98876 -32.52977 -31.23385 -30.90430 -28.24791 -27.26764 -27.18059 -25.60941 -24.53955 -23.65798 -22.57308 -21.83016 -19.78641 -19.18053 -18.91285 -17.85894 -17.73259 -16.89887 -16.44160 -16.13705 -16.06299 -15.50314 -15.16830 -14.96653 -14.69791 -14.41805 -14.18027 -14.04906 -13.76863 -13.66593 -13.58680 -13.38026 -13.19836 -12.96151 -12.66050 -12.49552 -12.37261 -12.16743 -11.96033 -11.69505 -11.59857 -11.51228 -11.43214 -11.24249 -11.05382 -10.73770 -10.49183 -10.43978 -10.34771 -10.28248 -10.22084 -9.76626 -9.47864 -8.91000 -8.44735 -7.99731 -7.87788 -6.43204 -3.84165 2.34456 2.40512 3.18400 3.24545 3.28440 3.49794 3.83668 3.89971 4.09188 4.20090 4.23830 4.41864 4.53696 4.57263 4.63338 4.87935 4.88730 4.95433 4.99215 5.03791 5.11531 5.18877 5.22924 5.24731 5.26787 5.28623 5.31881 5.37357 5.50476 5.57780 5.62890 5.70489 5.72135 5.76882 5.84355 5.89536 5.94996 6.05243 6.08229 6.25604 6.37122 6.46445 6.63261 7.19711 7.26337 7.36143 7.53360 7.90921 8.04403 8.59881 9.16260 9.52747 10.04235 10.74379 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.002139 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.432253 B =13089.404409 C =13303.648255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.075 3.925 4 H 0.085 0.915 5 C -0.175 4.175 6 C 0.530 3.470 7 O -0.521 6.521 8 N -0.618 5.618 9 C 0.097 3.903 10 C -0.093 4.093 11 H 0.082 0.918 12 C -0.100 4.100 13 C 0.048 3.952 14 N -0.508 5.508 15 C 0.045 3.955 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.057 3.943 28 C -0.085 4.085 29 H 0.107 0.893 30 C 0.111 3.889 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.023 0.977 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.075 0.925 48 H 0.031 0.969 49 H 0.070 0.930 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 -13.405 -6.608 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.013 3.987 4 H 0.103 0.897 5 C -0.233 4.233 6 C 0.317 3.683 7 O -0.396 6.396 8 N -0.354 5.354 9 C -0.026 4.026 10 C -0.112 4.112 11 H 0.100 0.900 12 C -0.139 4.139 13 C -0.079 4.079 14 N -0.232 5.232 15 C -0.086 4.086 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.072 4.072 28 C -0.104 4.104 29 H 0.125 0.875 30 C -0.012 4.012 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.049 0.951 49 H 0.088 0.912 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.103 -13.433 -7.491 23.002 hybrid contribution 0.093 0.258 1.315 1.343 sum -17.010 -13.174 -6.177 22.384 Atomic orbital electron populations 1.22889 0.80514 1.03318 1.00083 1.88048 1.19727 1.25144 1.94949 1.21859 0.93213 0.86716 0.96872 0.89713 1.22309 1.03554 1.02621 0.94821 1.20028 0.86036 0.82709 0.79538 1.90728 1.68273 1.28840 1.51743 1.48586 1.25852 1.06612 1.54361 1.22601 0.99827 0.81135 0.99003 1.21715 0.95778 0.95175 0.98566 0.89973 1.20984 0.99286 0.94360 0.99225 1.22401 0.87685 1.02836 0.95024 1.61806 1.07183 1.13969 1.40234 1.21853 0.96671 0.96949 0.93171 1.19705 0.84281 0.89074 0.83979 1.90474 1.50561 1.57131 1.48055 1.41869 1.35490 1.08203 1.34466 1.19635 1.20686 0.82576 1.19960 0.87954 1.25266 0.96278 1.00237 0.96188 1.69605 1.25612 1.34811 1.24264 0.85921 0.78062 0.82213 0.78033 1.19941 1.21008 1.19885 1.22142 0.99735 0.89261 0.96023 1.22331 0.95540 0.92417 1.00081 0.87464 1.22317 0.85863 0.96888 0.96127 0.93719 0.93840 0.89061 0.91079 0.90904 0.90550 0.90536 0.90506 0.91574 0.90015 0.87481 0.95938 0.93566 0.89390 0.77500 0.91816 0.90643 0.95116 0.91162 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.36 -4.01 9.89 -55.04 -0.54 -4.55 16 3 C 0.07 0.71 2.46 -27.88 -0.07 0.64 16 4 H 0.09 0.59 7.28 -51.93 -0.38 0.22 16 5 C -0.18 -1.37 9.42 37.16 0.35 -1.02 16 6 C 0.53 6.59 7.23 -10.99 -0.08 6.51 16 7 O -0.52 -8.72 16.86 -14.25 -0.24 -8.96 16 8 N -0.62 -6.45 3.34 -169.76 -0.57 -7.01 16 9 C 0.10 0.82 4.15 -2.70 -0.01 0.81 16 10 C -0.09 -0.85 3.04 -90.20 -0.27 -1.13 16 11 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 12 C -0.10 -1.11 5.56 -27.71 -0.15 -1.26 16 13 C 0.05 0.68 4.94 -3.74 -0.02 0.66 16 14 N -0.51 -7.72 4.44 -236.30 -1.05 -8.77 16 15 C 0.04 0.76 5.43 -4.98 -0.03 0.74 16 16 C 0.44 10.03 7.48 -10.99 -0.08 9.95 16 17 O -0.58 -14.75 13.86 5.55 0.08 -14.67 16 18 N -0.56 -13.89 5.29 -10.97 -0.06 -13.95 16 19 C -0.30 -8.13 9.68 -14.94 -0.14 -8.28 16 20 H 0.10 2.91 7.16 -52.48 -0.38 2.53 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 23 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.06 0.68 4.18 -4.08 -0.02 0.66 16 28 C -0.08 -0.84 3.76 -88.65 -0.33 -1.17 16 29 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 30 C 0.11 1.13 6.19 -2.35 -0.01 1.11 16 31 H 0.04 0.23 7.96 -51.93 -0.41 -0.19 16 32 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.43 7.96 -51.93 -0.41 0.01 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.54 5.60 -51.93 -0.29 0.25 16 37 H 0.08 0.49 7.27 -51.93 -0.38 0.12 16 38 H 0.08 0.69 4.97 -51.93 -0.26 0.44 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.11 1.94 5.76 -51.93 -0.30 1.64 16 42 H 0.02 0.29 6.57 -51.93 -0.34 -0.05 16 43 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 44 H 0.09 1.37 7.97 -51.93 -0.41 0.96 16 45 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.08 0.86 7.97 -51.93 -0.41 0.45 16 48 H 0.03 0.37 6.88 -51.93 -0.36 0.01 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.79 7.77 -51.93 -0.40 0.39 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -33.55 387.97 -8.71 -42.26 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.99 Total: 7.62 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 0.12 Total: 9.98 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.95 Total: -53.21 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.71 Total: -28.19 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.55 -8.71 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689213877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.419 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds