Wall clock time and date at job start Tue Mar 31 2020 22:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00206 * 2 1 4 4 H 1.08997 * 109.46651 * 330.00563 * 3 2 1 5 5 C 1.53000 * 109.46553 * 90.00091 * 3 2 1 6 6 C 1.50698 * 109.47524 * 210.00094 * 3 2 1 7 7 O 1.21286 * 119.99543 * 352.76638 * 6 3 2 8 8 N 1.34776 * 120.00130 * 172.75994 * 6 3 2 9 9 C 1.47877 * 125.74342 * 4.88322 * 8 6 3 10 10 C 1.54127 * 103.88594 * 204.55471 * 9 8 6 11 11 H 1.08998 * 110.15134 * 76.46952 * 10 9 8 12 12 C 1.51181 * 112.23671 * 199.22256 * 10 9 8 13 13 C 1.52873 * 111.19718 * 63.79911 * 12 10 9 14 14 N 1.47182 * 108.19796 * 58.62750 * 13 12 10 15 15 C 1.46901 * 110.99488 * 171.12381 * 14 13 12 16 16 C 1.50700 * 109.47364 * 293.83450 * 15 14 13 17 17 O 1.21288 * 119.99930 * 2.12749 * 16 15 14 18 18 N 1.34776 * 120.00170 * 182.11586 * 16 15 14 19 19 C 1.37094 * 120.00272 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99747 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00264 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99934 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46919 * 59.99972 * 23 21 19 25 25 H 1.48501 * 109.46998 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47026 * 299.99981 * 23 21 19 27 27 C 1.46449 * 110.11146 * 294.44753 * 14 13 12 28 28 C 1.52988 * 111.04616 * 63.85619 * 27 14 13 29 29 H 1.08996 * 112.18148 * 73.91572 * 28 27 14 30 30 C 1.47342 * 125.74572 * 184.90574 * 8 6 3 31 31 H 1.09001 * 109.46827 * 299.99242 * 1 2 3 32 32 H 1.08993 * 109.47474 * 59.99725 * 1 2 3 33 33 H 1.08998 * 109.46983 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47198 * 296.10086 * 5 3 2 35 35 H 1.08997 * 109.47369 * 56.10465 * 5 3 2 36 36 H 1.09006 * 109.46526 * 176.10600 * 5 3 2 37 37 H 1.09001 * 110.54606 * 323.19373 * 9 8 6 38 38 H 1.09000 * 110.54571 * 85.84366 * 9 8 6 39 39 H 1.09000 * 109.12477 * 303.37802 * 12 10 9 40 40 H 1.09002 * 109.13045 * 184.22700 * 12 10 9 41 41 H 1.09004 * 109.72136 * 178.30590 * 13 12 10 42 42 H 1.08999 * 109.71867 * 298.95414 * 13 12 10 43 43 H 1.08994 * 109.47215 * 53.84060 * 15 14 13 44 44 H 1.09004 * 109.46604 * 173.83927 * 15 14 13 45 45 H 0.97003 * 119.99848 * 0.02562 * 18 16 15 46 46 H 0.96998 * 119.99835 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.16476 * 184.25922 * 27 14 13 48 48 H 1.09000 * 109.16166 * 303.44910 * 27 14 13 49 49 H 1.08998 * 109.99137 * 61.41427 * 30 8 6 50 50 H 1.09000 * 110.02934 * 300.10498 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 -0.5137 5 6 2.2177 1.7712 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.8088 0.2005 -1.0554 8 7 4.0041 2.4085 -0.9624 9 6 3.6022 3.7586 -0.5122 10 6 4.2670 4.7022 -1.5336 11 1 3.7105 4.6932 -2.4707 12 6 4.3784 6.1183 -1.0160 13 6 5.2921 6.1892 0.2076 14 7 6.6176 5.6788 -0.1782 15 6 7.6020 5.9125 0.8868 16 6 7.8245 7.3941 1.0491 17 8 7.1939 8.1796 0.3735 18 7 8.7239 7.8463 1.9452 19 6 8.9260 9.1942 2.0932 20 1 8.3640 9.8937 1.4920 21 6 9.8536 9.6604 3.0166 22 7 10.5378 8.8093 3.7477 23 14 10.1284 11.4971 3.2188 24 1 8.8570 12.1455 3.6288 25 1 11.1612 11.7314 4.2597 26 1 10.5849 12.0742 1.9290 27 6 6.5317 4.2551 -0.5106 28 6 5.6422 4.0294 -1.7346 29 1 6.1314 4.3324 -2.6603 30 6 5.2543 2.5254 -1.7333 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2505 1.8678 1.9358 35 1 2.8264 1.0413 1.9761 36 1 2.7239 2.7366 1.4433 37 1 2.5178 3.8646 -0.5419 38 1 3.9772 3.9542 0.4924 39 1 3.3864 6.4776 -0.7422 40 1 4.7843 6.7551 -1.8021 41 1 5.3792 7.2230 0.5422 42 1 4.8811 5.5760 1.0096 43 1 7.2302 5.4961 1.8230 44 1 8.5435 5.4304 0.6234 45 1 9.2284 7.2181 2.4854 46 1 11.1851 9.1348 4.3926 47 1 7.5318 3.8757 -0.7201 48 1 6.1154 3.7139 0.3390 49 1 5.0957 2.1806 -2.7551 50 1 6.0411 1.9381 -1.2599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689213877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:58 Heat of formation + Delta-G solvation = -123.246973 kcal Electronic energy + Delta-G solvation = -30546.775265 eV Core-core repulsion = 26380.354184 eV Total energy + Delta-G solvation = -4166.421081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93010 -40.57838 -39.76916 -38.48592 -37.10409 -35.82905 -34.00581 -33.37575 -33.16368 -31.70032 -29.42176 -28.33871 -27.73065 -26.75506 -26.03912 -24.45528 -23.69361 -22.73149 -20.98750 -20.54347 -19.88436 -19.75256 -18.50005 -17.79616 -17.60058 -17.27109 -16.91320 -16.57498 -16.38435 -16.28663 -16.02268 -15.68535 -15.36925 -15.19521 -15.09562 -14.66545 -14.42781 -14.36445 -14.12293 -13.92219 -13.64653 -13.51183 -13.43167 -13.21770 -13.06996 -12.87929 -12.77982 -12.69051 -12.52808 -12.40674 -12.22011 -12.13382 -12.10759 -11.68233 -11.54861 -11.34132 -11.14435 -11.07221 -10.57850 -10.18956 -9.96777 -9.77625 -9.14115 -8.43896 -5.92250 1.41193 1.42962 1.45550 1.53658 1.64083 2.08746 2.29784 2.74686 2.86723 3.23027 3.32463 3.39510 3.50225 3.69947 3.77307 3.84565 3.97025 4.07709 4.21723 4.25513 4.27710 4.39687 4.43824 4.45515 4.49576 4.52372 4.53426 4.54866 4.61054 4.65595 4.71999 4.75292 4.77905 4.84932 4.89695 4.96117 5.09904 5.12981 5.19946 5.22173 5.36243 5.43227 5.44960 5.93230 6.04336 6.13113 6.26331 6.38914 6.63454 7.02858 7.15793 7.59976 8.15375 8.73270 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.002139 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.432253 B =13089.404409 C =13303.648255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.076 3.924 4 H 0.116 0.884 5 C -0.170 4.170 6 C 0.522 3.478 7 O -0.576 6.576 8 N -0.613 5.613 9 C 0.097 3.903 10 C -0.086 4.086 11 H 0.101 0.899 12 C -0.091 4.091 13 C 0.048 3.952 14 N -0.524 5.524 15 C 0.056 3.944 16 C 0.444 3.556 17 O -0.609 6.609 18 N -0.577 5.577 19 C -0.329 4.329 20 H 0.081 0.919 21 C -0.016 4.016 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.272 1.272 27 C 0.060 3.940 28 C -0.078 4.078 29 H 0.112 0.888 30 C 0.112 3.888 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.395 0.605 46 H 0.276 0.724 47 H 0.079 0.921 48 H 0.034 0.966 49 H 0.074 0.926 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.021 -13.366 -6.688 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.316 6.316 3 C 0.015 3.985 4 H 0.133 0.867 5 C -0.228 4.228 6 C 0.311 3.689 7 O -0.455 6.455 8 N -0.348 5.348 9 C -0.024 4.024 10 C -0.105 4.105 11 H 0.120 0.880 12 C -0.129 4.129 13 C -0.080 4.080 14 N -0.249 5.249 15 C -0.075 4.075 16 C 0.232 3.768 17 O -0.495 6.495 18 N -0.214 5.214 19 C -0.459 4.459 20 H 0.099 0.901 21 C -0.215 4.215 22 N -0.564 5.564 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.068 4.068 28 C -0.098 4.098 29 H 0.130 0.870 30 C -0.011 4.011 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.228 0.772 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.052 0.948 49 H 0.092 0.908 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.825 -13.383 -7.568 24.306 hybrid contribution 0.589 0.223 1.300 1.444 sum -18.237 -13.160 -6.268 23.347 Atomic orbital electron populations 1.23103 0.78473 1.04257 1.01553 1.88007 1.22082 1.26355 1.95179 1.21978 0.91933 0.86942 0.97610 0.86687 1.22294 1.04546 1.02255 0.93685 1.20714 0.86974 0.82218 0.78950 1.90696 1.69796 1.30807 1.54197 1.48639 1.25500 1.07026 1.53597 1.22730 1.01707 0.79546 0.98435 1.21665 0.95446 0.93838 0.99559 0.88029 1.20888 0.99461 0.95421 0.97141 1.22326 0.88073 1.00464 0.97105 1.61802 1.07322 1.16208 1.39527 1.21713 0.98388 0.92549 0.94886 1.20693 0.82489 0.91420 0.82235 1.90455 1.51283 1.58921 1.48848 1.41953 1.36476 1.07533 1.35462 1.19612 1.21692 0.83679 1.20867 0.90124 1.26037 0.95588 1.04415 0.95473 1.69674 1.25819 1.36391 1.24482 0.84998 0.78170 0.77137 0.78100 1.19582 1.19777 1.19767 1.22186 1.00641 0.87032 0.96933 1.22288 0.95802 0.92327 0.99335 0.86956 1.22281 0.85804 0.96730 0.96295 0.91886 0.92606 0.88595 0.88860 0.92915 0.89645 0.87439 0.90698 0.89268 0.91847 0.91773 0.94335 0.91905 0.87761 0.77191 0.91432 0.90274 0.94824 0.90784 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.82 113.37 1.23 1.47 16 2 O -0.40 -8.31 9.89 -130.04 -1.29 -9.60 16 3 C 0.08 1.27 2.46 29.85 0.07 1.34 16 4 H 0.12 1.16 7.28 -2.39 -0.02 1.14 16 5 C -0.17 -2.22 9.42 71.98 0.68 -1.55 16 6 C 0.52 12.33 7.23 87.66 0.63 12.96 16 7 O -0.58 -19.42 16.86 15.89 0.27 -19.15 16 8 N -0.61 -11.48 3.34 -809.39 -2.70 -14.18 16 9 C 0.10 1.32 4.15 86.50 0.36 1.67 16 10 C -0.09 -1.31 3.04 -10.52 -0.03 -1.35 16 11 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 12 C -0.09 -1.82 5.56 29.96 0.17 -1.65 16 13 C 0.05 1.31 4.94 86.21 0.43 1.74 16 14 N -0.52 -15.42 4.44 -901.52 -4.00 -19.42 16 15 C 0.06 1.86 5.43 85.56 0.46 2.33 16 16 C 0.44 20.41 7.48 87.66 0.66 21.07 16 17 O -0.61 -31.99 13.86 -3.05 -0.04 -32.04 16 18 N -0.58 -29.05 5.29 -306.99 -1.62 -30.68 16 19 C -0.33 -18.34 9.68 84.04 0.81 -17.52 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.02 -0.83 5.50 84.92 0.47 -0.36 16 22 N -0.92 -49.57 13.05 21.66 0.28 -49.28 16 23 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.06 1.32 4.18 86.38 0.36 1.68 16 28 C -0.08 -1.40 3.76 -9.52 -0.04 -1.43 16 29 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 30 C 0.11 2.10 6.19 87.01 0.54 2.64 16 31 H 0.06 0.45 7.96 -2.39 -0.02 0.43 16 32 H 0.06 0.47 8.08 -2.39 -0.02 0.45 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.80 7.96 -2.39 -0.02 0.78 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.94 5.60 -2.38 -0.01 0.92 16 37 H 0.11 0.85 7.27 -2.39 -0.02 0.84 16 38 H 0.07 1.10 4.97 -2.39 -0.01 1.09 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 2.35 5.76 -2.39 -0.01 2.34 16 42 H 0.04 0.92 6.57 -2.39 -0.02 0.91 16 43 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 44 H 0.10 3.14 7.97 -2.38 -0.02 3.12 16 45 H 0.39 19.05 7.90 -92.71 -0.73 18.32 16 46 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 47 H 0.08 1.69 7.97 -2.39 -0.02 1.67 16 48 H 0.03 0.74 6.88 -2.39 -0.02 0.72 16 49 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 50 H 0.06 1.32 7.77 -2.39 -0.02 1.30 16 Total: -1.00 -75.60 387.97 -0.06 -75.66 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.22 Total: 31.15 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 6.80 Total: 23.04 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -8.04 Total: -113.56 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -1.06 Total: -60.78 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -75.60 -0.06 -75.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689213877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.584 kcal (2) G-P(sol) polarization free energy of solvation -75.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds