Wall clock time and date at job start Wed Apr 1 2020 00:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.46910 * 2 1 4 4 C 1.46896 * 111.00266 * 297.54978 * 3 2 1 5 5 C 1.52992 * 109.47291 * 288.26772 * 4 3 2 6 6 N 1.46506 * 109.47430 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00026 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00299 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99447 * 180.02562 * 7 6 5 10 10 H 1.08998 * 115.56916 * 34.41226 * 9 7 6 11 11 C 1.53185 * 117.51748 * 248.63385 * 9 7 6 12 12 C 1.52113 * 117.51512 * 180.18680 * 9 7 6 13 13 C 1.53711 * 121.74582 * 218.50624 * 12 9 7 14 14 C 1.54691 * 103.69486 * 143.52056 * 13 12 9 15 15 O 1.44505 * 104.87195 * 23.83066 * 14 13 12 16 16 C 1.44636 * 105.45809 * 320.02597 * 15 14 13 17 17 C 1.46900 * 110.99752 * 61.50600 * 3 2 1 18 18 C 1.50702 * 109.47482 * 66.04738 * 17 3 2 19 19 O 1.21285 * 119.99636 * 359.97438 * 18 17 3 20 20 N 1.34778 * 120.00092 * 180.02562 * 18 17 3 21 21 C 1.37094 * 119.99657 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00340 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99644 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00435 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99952 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46734 * 60.00032 * 25 23 21 27 27 H 1.48492 * 109.47208 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47162 * 300.00260 * 25 23 21 29 29 H 1.09005 * 109.46634 * 181.26642 * 1 2 3 30 30 H 1.08997 * 109.46816 * 301.26391 * 1 2 3 31 31 H 1.08994 * 109.47196 * 61.26932 * 1 2 3 32 32 H 1.08997 * 109.46890 * 240.00274 * 2 1 3 33 33 H 1.08999 * 109.47210 * 119.99891 * 2 1 3 34 34 H 1.09004 * 109.47253 * 48.27470 * 4 3 2 35 35 H 1.09007 * 109.47338 * 168.26652 * 4 3 2 36 36 H 1.08998 * 109.47202 * 299.94485 * 5 4 3 37 37 H 1.09010 * 109.46929 * 59.94675 * 5 4 3 38 38 H 0.96999 * 119.99438 * 0.02562 * 6 5 4 39 39 H 1.09006 * 117.52051 * 0.02562 * 11 9 7 40 40 H 1.08997 * 117.51792 * 145.15590 * 11 9 7 41 41 H 1.09007 * 110.57565 * 262.06806 * 13 12 9 42 42 H 1.08999 * 110.58001 * 24.81361 * 13 12 9 43 43 H 1.08993 * 110.36356 * 142.67454 * 14 13 12 44 44 H 1.08995 * 110.35821 * 264.98633 * 14 13 12 45 45 H 1.08996 * 110.42247 * 280.88605 * 16 15 14 46 46 H 1.09000 * 110.41544 * 158.42778 * 16 15 14 47 47 H 1.09009 * 109.47023 * 186.04403 * 17 3 2 48 48 H 1.09001 * 109.47486 * 306.04279 * 17 3 2 49 49 H 0.96996 * 119.99742 * 359.97438 * 20 18 17 50 50 H 0.96997 * 120.00045 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5971 2.0928 -1.2159 5 6 2.3840 1.5608 -2.4152 6 7 1.9622 2.2662 -3.6280 7 6 2.5234 1.9611 -4.8147 8 8 3.3779 1.1029 -4.8787 9 6 2.0898 2.6873 -6.0620 10 1 1.8222 3.7353 -5.9273 11 6 1.3128 1.8877 -7.1125 12 6 2.7572 2.2950 -7.3714 13 6 3.1229 3.3401 -8.4377 14 6 4.4585 2.8189 -9.0184 15 8 4.4507 1.3990 -8.7500 16 6 3.8925 1.2607 -7.4228 17 6 1.5782 2.0993 1.2053 18 6 2.2307 1.4884 2.4187 19 8 2.9885 0.5500 2.2918 20 7 1.9713 1.9843 3.6448 21 6 2.5646 1.4282 4.7486 22 1 3.2393 0.5925 4.6356 23 6 2.2976 1.9397 6.0126 24 7 1.4761 2.9562 6.1501 25 14 3.1053 1.1815 7.5167 26 1 4.5814 1.2863 7.3916 27 1 2.6597 1.9042 8.7350 28 1 2.7175 -0.2483 7.6190 29 1 -0.3633 -1.0275 0.0227 30 1 -0.3633 0.5333 0.8784 31 1 -0.3633 0.4940 -0.9011 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5317 1.9303 -1.3792 35 1 1.7882 3.1597 -1.1002 36 1 3.4493 1.7243 -2.2523 37 1 2.1936 0.4936 -2.5303 38 1 1.2790 2.9529 -3.5767 39 1 1.1151 0.8368 -6.9009 40 1 0.5348 2.4102 -7.6691 41 1 2.3577 3.3803 -9.2130 42 1 3.2573 4.3212 -7.9822 43 1 4.5021 3.0014 -10.0921 44 1 5.3013 3.2948 -8.5173 45 1 4.6461 1.4853 -6.6680 46 1 3.4974 0.2550 -7.2795 47 1 1.8621 3.1491 1.1300 48 1 0.4949 2.0217 1.2975 49 1 1.3650 2.7346 3.7462 50 1 1.2901 3.3135 7.0325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691046447.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:22 Heat of formation + Delta-G solvation = -79.588657 kcal Electronic energy + Delta-G solvation = -29104.218163 eV Core-core repulsion = 24939.690249 eV Total energy + Delta-G solvation = -4164.527914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87904 -39.31528 -38.81811 -37.11679 -36.13869 -34.83518 -33.84375 -31.28042 -30.84714 -30.42860 -29.56397 -27.62623 -26.36922 -24.72089 -24.28350 -23.14111 -22.99007 -20.88275 -20.46219 -19.65882 -18.98754 -17.81098 -17.49675 -16.64876 -16.40566 -16.18245 -15.95943 -15.71767 -15.52761 -15.17918 -14.96493 -14.56356 -14.38192 -14.10820 -13.82534 -13.60015 -13.37760 -13.17732 -13.07625 -12.91316 -12.72044 -12.54001 -12.11031 -11.88504 -11.83546 -11.69708 -11.53216 -11.41961 -11.39807 -11.12788 -10.96658 -10.92598 -10.46359 -10.43076 -10.39894 -10.22577 -10.20117 -9.76262 -9.46550 -9.23419 -8.47008 -7.98644 -7.86019 -6.42317 -3.83052 2.18416 2.73443 3.19784 3.25452 3.25740 3.30096 3.69744 3.87066 3.89771 4.05345 4.21327 4.24173 4.32605 4.48154 4.61882 4.74453 4.80898 4.94394 4.99742 5.04380 5.06899 5.20305 5.23103 5.31918 5.32388 5.37667 5.40795 5.44721 5.46358 5.50690 5.57421 5.63123 5.65987 5.76260 5.81485 5.87099 5.92053 6.05442 6.21651 6.26759 6.32518 6.49867 6.61208 7.18870 7.26183 7.34556 7.54631 7.97552 8.05651 8.61299 9.17706 9.53719 10.05756 10.75319 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028803 B = 0.001647 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.873677 B =16994.941727 C =17160.581866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 N -0.508 5.508 4 C 0.038 3.962 5 C 0.124 3.876 6 N -0.723 5.723 7 C 0.541 3.459 8 O -0.534 6.534 9 C -0.174 4.174 10 H 0.127 0.873 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.120 4.120 14 C 0.046 3.954 15 O -0.379 6.379 16 C 0.091 3.909 17 C 0.043 3.957 18 C 0.445 3.555 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.053 0.947 49 H 0.391 0.609 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 4.706 -26.985 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.086 4.086 3 N -0.232 5.232 4 C -0.090 4.090 5 C 0.000 4.000 6 N -0.375 5.375 7 C 0.327 3.673 8 O -0.411 6.411 9 C -0.195 4.195 10 H 0.145 0.855 11 C -0.169 4.169 12 C -0.132 4.132 13 C -0.158 4.158 14 C -0.031 4.031 15 O -0.298 6.298 16 C 0.015 3.985 17 C -0.088 4.088 18 C 0.230 3.770 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.233 0.767 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.071 0.929 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.224 3.354 -27.031 27.428 hybrid contribution -1.513 0.952 1.218 2.163 sum -4.737 4.306 -25.813 26.595 Atomic orbital electron populations 1.22445 0.99104 1.02260 1.01340 1.22411 0.91853 0.89781 1.04590 1.61673 1.59466 1.02261 0.99751 1.22279 0.97361 0.98906 0.90488 1.21326 1.00164 0.96579 0.81930 1.45876 1.42537 1.41609 1.07458 1.19575 0.81404 0.82682 0.83683 1.90717 1.31548 1.32710 1.86076 1.22246 1.07229 1.01011 0.89026 0.85536 1.23012 0.93792 1.00965 0.99092 1.22194 0.95835 0.99841 0.95300 1.22442 0.98468 0.97873 0.97005 1.23393 0.96150 0.82370 1.01149 1.89181 1.84180 1.22840 1.33605 1.22867 0.93045 0.98403 0.84170 1.21918 0.98171 0.98409 0.90335 1.19694 0.86483 0.86968 0.83870 1.90486 1.39583 1.30391 1.85549 1.41848 1.41994 1.31475 1.04786 1.19650 1.24437 1.14949 0.83810 0.87951 1.25249 0.97104 0.96389 0.99158 1.69601 1.35534 1.24417 1.24848 0.85924 0.79457 0.78943 0.79935 1.19893 1.21006 1.19931 0.92165 0.92251 0.93185 0.91305 0.87511 0.93831 0.90504 0.90263 0.91176 0.76662 0.87735 0.87349 0.90009 0.90008 0.89051 0.92129 0.90214 0.88673 0.89488 0.92880 0.77546 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 9.28 37.16 0.34 -2.18 16 2 C 0.04 0.64 5.57 -3.82 -0.02 0.62 16 3 N -0.51 -7.97 4.41 -236.07 -1.04 -9.01 16 4 C 0.04 0.44 4.94 -3.83 -0.02 0.42 16 5 C 0.12 1.41 5.72 -4.04 -0.02 1.39 16 6 N -0.72 -6.39 5.56 -60.29 -0.33 -6.73 16 7 C 0.54 5.56 7.61 -10.99 -0.08 5.47 16 8 O -0.53 -7.51 13.83 5.56 0.08 -7.43 16 9 C -0.17 -1.23 6.08 -92.13 -0.56 -1.79 16 10 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 11 C -0.13 -0.83 10.01 -27.00 -0.27 -1.10 16 12 C -0.13 -1.03 2.51 -154.60 -0.39 -1.42 16 13 C -0.12 -0.72 6.88 -25.47 -0.18 -0.89 16 14 C 0.05 0.34 7.65 38.05 0.29 0.63 16 15 O -0.38 -4.14 11.65 -35.23 -0.41 -4.56 16 16 C 0.09 0.96 5.65 37.51 0.21 1.17 16 17 C 0.04 0.73 5.22 -4.98 -0.03 0.70 16 18 C 0.44 10.23 7.50 -10.98 -0.08 10.15 16 19 O -0.58 -15.23 13.89 5.55 0.08 -15.16 16 20 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 21 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 25 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.84 6.24 -51.93 -0.32 0.52 16 31 H 0.05 0.56 6.29 -51.93 -0.33 0.23 16 32 H 0.07 0.99 6.60 -51.93 -0.34 0.64 16 33 H 0.11 2.08 5.86 -51.93 -0.30 1.78 16 34 H 0.04 0.44 5.89 -51.93 -0.31 0.13 16 35 H 0.08 0.78 7.81 -51.92 -0.41 0.38 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.89 6.71 -51.92 -0.35 0.54 16 38 H 0.40 2.34 8.47 -40.82 -0.35 1.99 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.96 7.04 -51.93 -0.37 0.59 16 46 H 0.10 1.06 8.04 -51.93 -0.42 0.64 16 47 H 0.09 1.33 7.86 -51.92 -0.41 0.92 16 48 H 0.05 0.82 6.02 -51.93 -0.31 0.51 16 49 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -33.23 397.83 -8.88 -42.11 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.85 Total: 11.21 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.04 Total: 5.28 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.71 Total: -53.38 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.26 Total: -27.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.23 -8.88 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691046447.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.481 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds