Wall clock time and date at job start Wed Apr 1 2020 00:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.46910 * 2 1 4 4 C 1.46896 * 111.00266 * 297.54978 * 3 2 1 5 5 C 1.52992 * 109.47291 * 288.26772 * 4 3 2 6 6 N 1.46506 * 109.47430 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00026 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00299 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99447 * 180.02562 * 7 6 5 10 10 H 1.08998 * 115.56916 * 34.41226 * 9 7 6 11 11 C 1.53185 * 117.51748 * 248.63385 * 9 7 6 12 12 C 1.52113 * 117.51512 * 180.18680 * 9 7 6 13 13 C 1.53711 * 121.74582 * 218.50624 * 12 9 7 14 14 C 1.54691 * 103.69486 * 143.52056 * 13 12 9 15 15 O 1.44505 * 104.87195 * 23.83066 * 14 13 12 16 16 C 1.44636 * 105.45809 * 320.02597 * 15 14 13 17 17 C 1.46900 * 110.99752 * 61.50600 * 3 2 1 18 18 C 1.50702 * 109.47482 * 66.04738 * 17 3 2 19 19 O 1.21285 * 119.99636 * 359.97438 * 18 17 3 20 20 N 1.34778 * 120.00092 * 180.02562 * 18 17 3 21 21 C 1.37094 * 119.99657 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00340 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99644 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00435 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99952 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46734 * 60.00032 * 25 23 21 27 27 H 1.48492 * 109.47208 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47162 * 300.00260 * 25 23 21 29 29 H 1.09005 * 109.46634 * 181.26642 * 1 2 3 30 30 H 1.08997 * 109.46816 * 301.26391 * 1 2 3 31 31 H 1.08994 * 109.47196 * 61.26932 * 1 2 3 32 32 H 1.08997 * 109.46890 * 240.00274 * 2 1 3 33 33 H 1.08999 * 109.47210 * 119.99891 * 2 1 3 34 34 H 1.09004 * 109.47253 * 48.27470 * 4 3 2 35 35 H 1.09007 * 109.47338 * 168.26652 * 4 3 2 36 36 H 1.08998 * 109.47202 * 299.94485 * 5 4 3 37 37 H 1.09010 * 109.46929 * 59.94675 * 5 4 3 38 38 H 0.96999 * 119.99438 * 0.02562 * 6 5 4 39 39 H 1.09006 * 117.52051 * 0.02562 * 11 9 7 40 40 H 1.08997 * 117.51792 * 145.15590 * 11 9 7 41 41 H 1.09007 * 110.57565 * 262.06806 * 13 12 9 42 42 H 1.08999 * 110.58001 * 24.81361 * 13 12 9 43 43 H 1.08993 * 110.36356 * 142.67454 * 14 13 12 44 44 H 1.08995 * 110.35821 * 264.98633 * 14 13 12 45 45 H 1.08996 * 110.42247 * 280.88605 * 16 15 14 46 46 H 1.09000 * 110.41544 * 158.42778 * 16 15 14 47 47 H 1.09009 * 109.47023 * 186.04403 * 17 3 2 48 48 H 1.09001 * 109.47486 * 306.04279 * 17 3 2 49 49 H 0.96996 * 119.99742 * 359.97438 * 20 18 17 50 50 H 0.96997 * 120.00045 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5971 2.0928 -1.2159 5 6 2.3840 1.5608 -2.4152 6 7 1.9622 2.2662 -3.6280 7 6 2.5234 1.9611 -4.8147 8 8 3.3779 1.1029 -4.8787 9 6 2.0898 2.6873 -6.0620 10 1 1.8222 3.7353 -5.9273 11 6 1.3128 1.8877 -7.1125 12 6 2.7572 2.2950 -7.3714 13 6 3.1229 3.3401 -8.4377 14 6 4.4585 2.8189 -9.0184 15 8 4.4507 1.3990 -8.7500 16 6 3.8925 1.2607 -7.4228 17 6 1.5782 2.0993 1.2053 18 6 2.2307 1.4884 2.4187 19 8 2.9885 0.5500 2.2918 20 7 1.9713 1.9843 3.6448 21 6 2.5646 1.4282 4.7486 22 1 3.2393 0.5925 4.6356 23 6 2.2976 1.9397 6.0126 24 7 1.4761 2.9562 6.1501 25 14 3.1053 1.1815 7.5167 26 1 4.5814 1.2863 7.3916 27 1 2.6597 1.9042 8.7350 28 1 2.7175 -0.2483 7.6190 29 1 -0.3633 -1.0275 0.0227 30 1 -0.3633 0.5333 0.8784 31 1 -0.3633 0.4940 -0.9011 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5317 1.9303 -1.3792 35 1 1.7882 3.1597 -1.1002 36 1 3.4493 1.7243 -2.2523 37 1 2.1936 0.4936 -2.5303 38 1 1.2790 2.9529 -3.5767 39 1 1.1151 0.8368 -6.9009 40 1 0.5348 2.4102 -7.6691 41 1 2.3577 3.3803 -9.2130 42 1 3.2573 4.3212 -7.9822 43 1 4.5021 3.0014 -10.0921 44 1 5.3013 3.2948 -8.5173 45 1 4.6461 1.4853 -6.6680 46 1 3.4974 0.2550 -7.2795 47 1 1.8621 3.1491 1.1300 48 1 0.4949 2.0217 1.2975 49 1 1.3650 2.7346 3.7462 50 1 1.2901 3.3135 7.0325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691046447.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:21 Heat of formation + Delta-G solvation = -105.826866 kcal Electronic energy + Delta-G solvation = -29105.355938 eV Core-core repulsion = 24939.690249 eV Total energy + Delta-G solvation = -4165.665688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.57983 -40.59613 -39.88514 -38.54600 -36.83762 -35.99910 -35.61935 -33.27211 -31.62189 -31.31382 -30.74328 -28.44525 -27.72660 -26.09170 -25.45896 -24.04417 -23.61129 -21.79895 -21.50350 -20.72243 -20.31474 -19.74735 -18.25799 -17.66409 -17.45524 -17.21404 -17.08025 -16.69314 -16.51370 -16.36110 -16.07987 -15.96353 -15.65729 -15.20509 -15.02534 -14.71214 -14.56200 -14.33819 -14.02429 -13.95062 -13.64264 -13.41261 -13.34332 -13.13828 -13.04942 -12.97069 -12.78574 -12.50851 -12.41719 -12.36829 -12.17840 -12.08379 -11.99010 -11.68791 -11.50862 -11.37017 -11.06772 -10.87035 -10.53995 -10.25748 -10.09715 -9.97796 -9.14755 -8.45083 -5.93172 1.39803 1.41684 1.44073 1.52078 1.94400 2.08664 2.30474 2.66119 2.89218 3.09190 3.21907 3.33661 3.44329 3.68045 3.75227 3.84563 3.90853 3.99650 4.06856 4.19892 4.25250 4.29337 4.31662 4.41086 4.46130 4.50989 4.54121 4.59373 4.61682 4.69858 4.79856 4.83447 4.85816 4.88327 4.89580 4.95340 5.03429 5.08364 5.09932 5.16999 5.36683 5.39469 5.42892 5.82422 5.89571 6.08726 6.22078 6.54892 6.63433 7.15474 7.24613 7.59452 8.16231 8.71944 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028803 B = 0.001647 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.873677 B =16994.941727 C =17160.581866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.044 3.956 3 N -0.533 5.533 4 C 0.047 3.953 5 C 0.133 3.867 6 N -0.708 5.708 7 C 0.533 3.467 8 O -0.581 6.581 9 C -0.165 4.165 10 H 0.162 0.838 11 C -0.117 4.117 12 C -0.146 4.146 13 C -0.110 4.110 14 C 0.035 3.965 15 O -0.406 6.406 16 C 0.092 3.908 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.419 0.581 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.112 0.888 48 H 0.077 0.923 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 7.070 -28.412 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.080 4.080 5 C 0.009 3.991 6 N -0.360 5.360 7 C 0.320 3.680 8 O -0.461 6.461 9 C -0.186 4.186 10 H 0.180 0.820 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.147 4.147 14 C -0.042 4.042 15 O -0.325 6.325 16 C 0.015 3.985 17 C -0.074 4.074 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.198 1.198 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.256 0.744 39 H 0.110 0.890 40 H 0.159 0.841 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.128 0.872 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.130 0.870 48 H 0.094 0.906 49 H 0.230 0.770 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.571 5.768 -28.473 29.581 hybrid contribution -0.723 0.157 1.577 1.742 sum -6.294 5.925 -26.896 28.250 Atomic orbital electron populations 1.22342 0.96742 1.02963 1.02090 1.22225 0.93753 0.89775 1.02609 1.61542 1.60767 1.02496 1.00848 1.22280 0.98447 0.99307 0.88008 1.21027 0.98736 0.96132 0.83254 1.45680 1.42578 1.41537 1.06220 1.20255 0.80648 0.82194 0.84885 1.90715 1.33679 1.34878 1.86808 1.22300 1.07043 1.02364 0.86914 0.82025 1.23129 0.93426 1.00632 0.98177 1.22223 0.95891 0.99905 0.96667 1.22443 0.97739 0.97795 0.96718 1.23676 0.97370 0.80586 1.02532 1.89142 1.84501 1.25392 1.33502 1.22667 0.93654 0.98585 0.83578 1.21775 0.98712 0.98916 0.87985 1.20830 0.85393 0.85968 0.84970 1.90471 1.41233 1.32110 1.86377 1.41907 1.42423 1.31870 1.05027 1.19594 1.25583 1.15437 0.85598 0.90525 1.25973 0.97352 0.96642 1.01166 1.69655 1.35836 1.24816 1.25730 0.85036 0.78371 0.78228 0.76980 1.19949 1.19433 1.19830 0.91577 0.93290 0.90424 0.90610 0.92190 0.91322 0.88505 0.93071 0.92733 0.74382 0.89026 0.84132 0.88160 0.88183 0.87210 0.92231 0.92804 0.90512 0.87033 0.90555 0.77000 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 9.28 71.98 0.67 -3.78 16 2 C 0.04 1.38 5.57 86.30 0.48 1.86 16 3 N -0.53 -16.17 4.41 -900.79 -3.97 -20.14 16 4 C 0.05 0.94 4.94 86.30 0.43 1.37 16 5 C 0.13 2.92 5.72 86.38 0.49 3.42 16 6 N -0.71 -10.99 5.56 -463.05 -2.57 -13.56 16 7 C 0.53 10.38 7.61 87.66 0.67 11.05 16 8 O -0.58 -16.98 13.83 -3.02 -0.04 -17.03 16 9 C -0.17 -1.88 6.08 -11.77 -0.07 -1.96 16 10 H 0.16 0.72 8.14 -2.39 -0.02 0.71 16 11 C -0.12 -1.15 10.01 30.42 0.30 -0.84 16 12 C -0.15 -2.05 2.51 -52.24 -0.13 -2.18 16 13 C -0.11 -1.00 6.88 31.41 0.22 -0.78 16 14 C 0.03 0.47 7.65 72.56 0.56 1.02 16 15 O -0.41 -9.10 11.65 -148.98 -1.74 -10.84 16 16 C 0.09 2.03 5.65 72.21 0.41 2.43 16 17 C 0.06 1.86 5.22 85.56 0.45 2.30 16 18 C 0.44 20.66 7.50 87.66 0.66 21.31 16 19 O -0.62 -33.97 13.89 -3.05 -0.04 -34.01 16 20 N -0.57 -29.11 5.29 -306.99 -1.62 -30.73 16 21 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 25 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.05 1.29 6.24 -2.39 -0.01 1.28 16 31 H 0.08 1.46 6.29 -2.39 -0.02 1.44 16 32 H 0.08 2.21 6.60 -2.39 -0.02 2.19 16 33 H 0.06 2.45 5.86 -2.39 -0.01 2.44 16 34 H 0.07 1.07 5.89 -2.38 -0.01 1.06 16 35 H 0.10 1.59 7.81 -2.38 -0.02 1.58 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.38 6.71 -2.38 -0.02 1.36 16 38 H 0.42 3.28 8.47 -92.71 -0.79 2.49 16 39 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.05 1.43 7.04 -2.39 -0.02 1.41 16 46 H 0.08 1.88 8.04 -2.39 -0.02 1.86 16 47 H 0.11 3.11 7.86 -2.38 -0.02 3.10 16 48 H 0.08 2.17 6.02 -2.39 -0.01 2.15 16 49 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 50 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -77.36 397.83 -1.81 -79.17 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.54 Total: 33.89 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 6.40 Total: 17.04 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -7.88 Total: -113.30 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -1.82 Total: -61.87 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -77.36 -1.81 -79.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691046447.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.658 kcal (2) G-P(sol) polarization free energy of solvation -77.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds