Wall clock time and date at job start Wed Apr 1 2020 00:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.46970 * 2 1 4 4 C 1.46896 * 111.00218 * 76.03287 * 3 2 1 5 5 C 1.53000 * 109.47502 * 199.54423 * 4 3 2 6 6 N 1.46500 * 109.47237 * 174.88235 * 5 4 3 7 7 C 1.34776 * 119.99811 * 179.97438 * 6 5 4 8 8 O 1.21289 * 120.00045 * 359.72984 * 7 6 5 9 9 C 1.50697 * 120.00117 * 179.97438 * 7 6 5 10 10 H 1.09007 * 115.56191 * 34.23314 * 9 7 6 11 11 C 1.53171 * 117.52538 * 248.37677 * 9 7 6 12 12 C 1.52133 * 117.52419 * 180.02562 * 9 7 6 13 13 C 1.54038 * 121.46430 * 356.55572 * 12 9 7 14 14 C 1.55185 * 101.83085 * 195.73819 * 13 12 9 15 15 O 1.44458 * 103.62989 * 36.32551 * 14 13 12 16 16 C 1.43991 * 107.04595 * 320.42796 * 15 14 13 17 17 C 1.46902 * 110.99710 * 199.98322 * 3 2 1 18 18 C 1.50706 * 109.47419 * 66.04911 * 17 3 2 19 19 O 1.21293 * 119.99624 * 359.97438 * 18 17 3 20 20 N 1.34769 * 120.00303 * 180.02562 * 18 17 3 21 21 C 1.37095 * 120.00196 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99720 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00070 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00051 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99857 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47080 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46953 * 119.99667 * 25 23 21 28 28 H 1.48500 * 109.46842 * 239.99571 * 25 23 21 29 29 H 1.09005 * 109.46974 * 294.86740 * 1 2 3 30 30 H 1.08999 * 109.47841 * 54.86613 * 1 2 3 31 31 H 1.08996 * 109.47641 * 174.87365 * 1 2 3 32 32 H 1.09000 * 109.46876 * 240.00547 * 2 1 3 33 33 H 1.08992 * 109.47475 * 120.00024 * 2 1 3 34 34 H 1.09003 * 109.47210 * 79.53805 * 4 3 2 35 35 H 1.09004 * 109.46806 * 319.54807 * 4 3 2 36 36 H 1.09007 * 109.46896 * 54.88108 * 5 4 3 37 37 H 1.08991 * 109.46858 * 294.88812 * 5 4 3 38 38 H 0.96991 * 119.99950 * 0.02562 * 6 5 4 39 39 H 1.09007 * 117.52318 * 359.97438 * 11 9 7 40 40 H 1.09001 * 117.52212 * 145.14937 * 11 9 7 41 41 H 1.08992 * 110.95824 * 313.87712 * 13 12 9 42 42 H 1.09004 * 110.94962 * 77.60461 * 13 12 9 43 43 H 1.09003 * 110.58869 * 277.79245 * 14 13 12 44 44 H 1.08993 * 110.72279 * 154.92903 * 14 13 12 45 45 H 1.08996 * 109.97256 * 266.94626 * 16 15 14 46 46 H 1.09006 * 109.99801 * 145.69957 * 16 15 14 47 47 H 1.09006 * 109.47065 * 186.04574 * 17 3 2 48 48 H 1.08997 * 109.47484 * 306.04381 * 17 3 2 49 49 H 0.97007 * 120.00052 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00121 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9279 3.5158 1.2037 6 7 1.6699 4.1228 2.5118 7 6 1.6607 5.4642 2.6422 8 8 1.8710 6.1687 1.6776 9 6 1.3947 6.0886 3.9877 10 1 1.7772 5.5366 4.8463 11 6 0.0796 6.8535 4.1655 12 6 1.3969 7.6077 4.0705 13 6 1.7375 8.4791 2.8468 14 6 2.0106 9.8581 3.5043 15 8 2.6601 9.5189 4.7493 16 6 1.9926 8.3541 5.2700 17 6 3.4102 1.4517 -0.4687 18 6 3.4711 1.0500 -1.9199 19 8 2.4559 0.7383 -2.5060 20 7 4.6536 1.0360 -2.5663 21 6 4.7089 0.6711 -3.8866 22 1 3.8048 0.3943 -4.4087 23 6 5.9282 0.6562 -4.5529 24 7 7.0282 0.9924 -3.9175 25 14 6.0035 0.1582 -6.3517 26 1 4.6376 -0.1725 -6.8314 27 1 6.5519 1.2814 -7.1537 28 1 6.8811 -1.0305 -6.4999 29 1 -0.3633 0.4322 0.9324 30 1 -0.3635 0.5914 -0.8404 31 1 -0.3634 -1.0235 -0.0918 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.7006 1.6560 1.9688 35 1 0.9320 1.6916 1.7710 36 1 1.1677 3.8437 0.4946 37 1 2.9119 3.8218 0.8488 38 1 1.5063 3.5593 3.2841 39 1 -0.5928 6.9053 3.3091 40 1 -0.4035 6.8046 5.1413 41 1 2.6267 8.1067 2.3384 42 1 0.8924 8.5349 2.1607 43 1 1.0752 10.3856 3.6912 44 1 2.6703 10.4596 2.8791 45 1 1.1984 8.6545 5.9533 46 1 2.7077 7.7153 5.7885 47 1 3.7826 2.4702 -0.3577 48 1 4.0258 0.7735 0.1222 49 1 5.4656 1.2850 -2.0975 50 1 7.8793 0.9824 -4.3827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691046448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:25 Heat of formation + Delta-G solvation = -82.881532 kcal Electronic energy + Delta-G solvation = -29243.581735 eV Core-core repulsion = 25078.911031 eV Total energy + Delta-G solvation = -4164.670704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83917 -39.24164 -38.70537 -36.97513 -36.11038 -34.77230 -33.81640 -31.37421 -30.94942 -30.52549 -29.38400 -27.83827 -26.37346 -24.65992 -23.99308 -22.98291 -22.37857 -21.14208 -20.63213 -19.70526 -19.14987 -17.86029 -17.43241 -16.64925 -16.36592 -16.17269 -15.83607 -15.69178 -15.37477 -14.94740 -14.70883 -14.67934 -14.27922 -13.97656 -13.80804 -13.68390 -13.63261 -13.27948 -13.05489 -12.84138 -12.57382 -12.41168 -12.19115 -11.80092 -11.74343 -11.61223 -11.48397 -11.45125 -11.27008 -11.12897 -10.86495 -10.79844 -10.54185 -10.43943 -10.33221 -10.21445 -9.98159 -9.78902 -9.46847 -9.18561 -8.43803 -7.99430 -7.91744 -6.40666 -3.81357 2.25675 2.79860 3.17124 3.27708 3.30762 3.34857 3.58121 3.88776 3.92365 4.09423 4.20776 4.25849 4.34369 4.57761 4.71078 4.81918 4.91254 4.97198 5.02920 5.07516 5.11933 5.19975 5.25412 5.26012 5.33344 5.39035 5.40963 5.47168 5.52390 5.57018 5.73465 5.77210 5.80733 5.85084 5.88980 5.95804 6.02430 6.10361 6.25799 6.29915 6.44215 6.50123 6.54260 7.23975 7.26961 7.36037 7.56509 8.05547 8.07493 8.62566 9.19248 9.55519 10.06973 10.77198 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.002061 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.678836 B =13580.884560 C =15202.137441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 N -0.512 5.512 4 C 0.045 3.955 5 C 0.121 3.879 6 N -0.725 5.725 7 C 0.540 3.460 8 O -0.529 6.529 9 C -0.173 4.173 10 H 0.126 0.874 11 C -0.133 4.133 12 C -0.133 4.133 13 C -0.107 4.107 14 C 0.044 3.956 15 O -0.377 6.377 16 C 0.085 3.915 17 C 0.042 3.958 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.022 0.978 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.048 0.952 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 9.537 21.890 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.084 4.084 5 C -0.002 4.002 6 N -0.376 5.376 7 C 0.326 3.674 8 O -0.405 6.405 9 C -0.194 4.194 10 H 0.144 0.856 11 C -0.170 4.170 12 C -0.134 4.134 13 C -0.145 4.145 14 C -0.033 4.033 15 O -0.296 6.296 16 C 0.009 3.991 17 C -0.089 4.089 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.066 0.934 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.884 10.203 20.452 25.761 hybrid contribution 0.994 -1.087 0.315 1.506 sum -10.890 9.116 20.766 25.158 Atomic orbital electron populations 1.21689 0.95259 1.01103 1.01558 1.22164 0.96011 0.87883 1.01391 1.61449 1.20044 1.19578 1.22576 1.22249 1.01446 0.93616 0.91125 1.21365 1.02684 0.92229 0.83940 1.45875 1.72983 1.06518 1.12266 1.19546 0.76668 0.82057 0.89110 1.90732 1.48282 1.61280 1.40238 1.22210 1.04910 0.94790 0.97513 0.85599 1.22992 0.89461 1.00416 1.04125 1.22181 1.00974 0.91705 0.98504 1.22615 1.04132 0.92489 0.95232 1.23694 0.97591 0.96983 0.85009 1.88929 1.57209 1.45395 1.38078 1.22510 0.96484 0.86698 0.93455 1.21949 0.88922 1.01926 0.96113 1.19694 0.84571 0.84946 0.87904 1.90509 1.34065 1.53193 1.68204 1.41881 1.07445 1.59425 1.11389 1.19740 0.95129 1.41806 0.86004 0.87846 1.25265 0.94817 0.97527 1.00407 1.69619 0.98705 1.48521 1.37475 0.85807 0.78510 0.78046 0.82027 1.19221 1.20735 1.20811 0.93947 0.91386 0.92832 0.88435 0.95933 0.94345 0.90235 0.90173 0.91211 0.76788 0.87686 0.87339 0.88525 0.89876 0.92243 0.88775 0.91656 0.89496 0.89316 0.93395 0.77523 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.96 37.15 0.37 -1.48 16 2 C 0.05 0.82 5.18 -3.83 -0.02 0.80 16 3 N -0.51 -8.11 4.10 -236.07 -0.97 -9.08 16 4 C 0.04 0.51 4.92 -3.83 -0.02 0.50 16 5 C 0.12 1.48 5.70 -4.04 -0.02 1.46 16 6 N -0.72 -6.84 5.56 -60.29 -0.33 -7.18 16 7 C 0.54 5.96 7.61 -10.99 -0.08 5.88 16 8 O -0.53 -7.96 13.78 5.55 0.08 -7.88 16 9 C -0.17 -1.31 6.09 -92.13 -0.56 -1.88 16 10 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16 11 C -0.13 -0.84 10.00 -27.11 -0.27 -1.11 16 12 C -0.13 -1.09 2.44 -154.71 -0.38 -1.46 16 13 C -0.11 -1.06 5.17 -25.03 -0.13 -1.19 16 14 C 0.04 0.38 7.73 38.31 0.30 0.67 16 15 O -0.38 -3.93 11.53 -35.23 -0.41 -4.33 16 16 C 0.09 0.66 7.50 37.32 0.28 0.94 16 17 C 0.04 0.74 5.27 -4.97 -0.03 0.72 16 18 C 0.44 10.38 7.29 -10.99 -0.08 10.30 16 19 O -0.58 -15.27 14.12 5.55 0.08 -15.20 16 20 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 21 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 22 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 25 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 29 H 0.04 0.47 6.91 -51.93 -0.36 0.11 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.87 5.85 -51.93 -0.30 1.56 16 33 H 0.02 0.30 7.99 -51.93 -0.42 -0.11 16 34 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 35 H 0.08 0.79 6.58 -51.93 -0.34 0.45 16 36 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 37 H 0.07 0.97 6.95 -51.93 -0.36 0.61 16 38 H 0.40 2.48 8.47 -40.82 -0.35 2.13 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.10 1.19 6.88 -51.93 -0.36 0.84 16 42 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 1.46 6.71 -51.93 -0.35 1.12 16 48 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 49 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 403.74 15.07 6.08 6.08 Total: -1.00 -33.72 403.74 -8.86 -42.58 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.15 Total: 11.03 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.88 Total: 6.17 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.64 Total: -54.62 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.25 Total: -27.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.72 -8.86 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691046448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.297 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds