Wall clock time and date at job start Tue Mar 31 2020 22:38:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42898 * 114.00425 * 2 1
4 4 H 1.09003 * 109.46685 * 29.99040 * 3 2 1
5 5 C 1.52998 * 109.46646 * 270.00165 * 3 2 1
6 6 C 1.50693 * 109.47378 * 150.00030 * 3 2 1
7 7 O 1.21279 * 120.00206 * 4.99735 * 6 3 2
8 8 N 1.34774 * 119.99692 * 185.00259 * 6 3 2
9 9 C 1.46500 * 120.00116 * 179.97438 * 8 6 3
10 10 C 1.52495 * 112.33205 * 68.79806 * 9 8 6
11 11 C 1.56048 * 102.40840 * 75.43765 * 10 9 8
12 12 C 1.55885 * 105.88781 * 25.45484 * 11 10 9
13 13 C 1.49137 * 104.18986 * 5.32285 * 12 11 10
14 14 H 1.08999 * 105.99507 * 74.60477 * 13 12 11
15 15 N 1.42326 * 131.08035 * 203.69129 * 13 12 11
16 16 C 1.46903 * 111.00349 * 278.23034 * 15 13 12
17 17 C 1.50696 * 109.47177 * 169.99593 * 16 15 13
18 18 O 1.21292 * 120.00262 * 0.02562 * 17 16 15
19 19 N 1.34784 * 119.99627 * 179.97438 * 17 16 15
20 20 C 1.37090 * 119.99714 * 180.02562 * 19 17 16
21 21 H 1.07999 * 120.00232 * 0.02562 * 20 19 17
22 22 C 1.38955 * 119.99992 * 180.02562 * 20 19 17
23 23 N 1.31413 * 120.00236 * 179.97438 * 22 20 19
24 24 Si 1.86803 * 119.99845 * 359.97438 * 22 20 19
25 25 H 1.48498 * 109.47174 * 270.00316 * 24 22 20
26 26 H 1.48501 * 109.47062 * 30.00267 * 24 22 20
27 27 H 1.48504 * 109.46913 * 150.00066 * 24 22 20
28 28 C 1.49728 * 105.65131 * 157.82157 * 15 13 12
29 29 C 1.52723 * 112.81121 * 289.88951 * 9 8 6
30 30 H 1.08996 * 109.46837 * 60.00281 * 1 2 3
31 31 H 1.09005 * 109.47333 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47045 * 300.00196 * 1 2 3
33 33 H 1.09001 * 109.47837 * 59.99408 * 5 3 2
34 34 H 1.09004 * 109.47167 * 179.97438 * 5 3 2
35 35 H 1.09008 * 109.47207 * 299.99361 * 5 3 2
36 36 H 0.96998 * 120.00563 * 359.97438 * 8 6 3
37 37 H 1.08998 * 110.82006 * 317.20396 * 10 9 8
38 38 H 1.09003 * 110.98745 * 193.74460 * 10 9 8
39 39 H 1.08998 * 110.16613 * 266.35229 * 11 10 9
40 40 H 1.08997 * 110.22864 * 144.59342 * 11 10 9
41 41 H 1.09000 * 110.49020 * 246.65130 * 12 11 10
42 42 H 1.08998 * 110.49238 * 123.99650 * 12 11 10
43 43 H 1.09005 * 109.46883 * 49.99762 * 16 15 13
44 44 H 1.09002 * 109.46817 * 290.00212 * 16 15 13
45 45 H 0.96999 * 120.00048 * 0.02562 * 19 17 16
46 46 H 0.97001 * 119.99781 * 179.97438 * 23 22 20
47 47 H 1.08994 * 110.05132 * 111.99745 * 28 15 13
48 48 H 1.09006 * 110.04874 * 233.47244 * 28 15 13
49 49 H 1.08998 * 111.06385 * 40.84855 * 29 9 8
50 50 H 1.09005 * 111.06226 * 164.80800 * 29 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3450 1.9993 0.5137
5 6 2.2177 1.7712 -1.4425
6 6 3.3387 1.2638 0.7104
7 8 3.7897 0.2044 1.0914
8 7 4.0254 2.4039 0.9223
9 6 5.3166 2.3636 1.6134
10 6 6.3992 1.6867 0.7796
11 6 6.7418 2.7819 -0.2779
12 6 6.3684 4.1440 0.3820
13 6 5.9781 3.7806 1.7748
14 1 6.9075 3.5572 2.2985
15 7 5.1470 4.4485 2.7175
16 6 5.8874 5.5092 3.4138
17 6 4.9270 6.3488 4.2160
18 8 3.7423 6.0889 4.2090
19 7 5.3847 7.3879 4.9422
20 6 4.5111 8.1514 5.6725
21 1 3.4562 7.9200 5.6662
22 6 4.9828 9.2230 6.4208
23 7 4.1453 9.9552 7.1204
24 14 6.8075 9.6228 6.4322
25 1 7.4697 8.8817 7.5355
26 1 7.4101 9.2225 5.1353
27 1 6.9931 11.0822 6.6347
28 6 4.6943 3.3918 3.6768
29 6 5.1837 2.0275 3.0972
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.2569 1.8012 -1.9564
34 1 2.6607 2.7671 -1.4426
35 1 2.8830 1.0772 -1.9564
36 1 3.6649 3.2512 0.6173
37 1 6.0121 0.7895 0.2968
38 1 7.2713 1.4508 1.3895
39 1 6.1528 2.6285 -1.1821
40 1 7.8055 2.7579 -0.5143
41 1 5.5303 4.6044 -0.1412
42 1 7.2289 4.8130 0.3892
43 1 6.3959 6.1375 2.6824
44 1 6.6231 5.0606 4.0813
45 1 6.3322 7.5955 4.9482
46 1 4.4747 10.7030 7.6430
47 1 5.1385 3.5622 4.6574
48 1 3.6069 3.3970 3.7527
49 1 4.4415 1.2454 3.2568
50 1 6.1464 1.7434 3.5223
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700854653.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:38:26
Heat of formation + Delta-G solvation = -83.553018 kcal
Electronic energy + Delta-G solvation = -31135.861893 eV
Core-core repulsion = 26971.162071 eV
Total energy + Delta-G solvation = -4164.699822 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.42032 -39.50747 -38.28023 -37.45898 -35.39312 -33.88717 -33.78700 -32.18145
-31.65387 -30.72283 -28.53205 -27.06477 -26.83533 -26.19077 -24.40413 -23.94993
-21.54866 -21.24214 -19.85865 -19.51211 -19.18438 -18.23117 -17.60375 -17.10669
-16.49038 -15.88851 -15.81838 -15.47356 -15.18048 -15.03586 -14.89237 -14.64625
-14.38619 -13.93269 -13.65430 -13.31358 -13.28309 -13.05816 -12.99898 -12.74700
-12.68319 -12.51452 -12.18350 -12.13744 -12.04178 -11.88857 -11.69481 -11.45760
-11.35549 -11.22443 -10.92667 -10.81661 -10.71204 -10.61148 -10.37201 -10.17282
-9.98329 -9.56732 -9.51585 -9.09635 -8.58725 -8.18528 -8.03916 -6.31737
-3.83004 2.56470 2.70382 3.01118 3.05349 3.13798 3.57244 3.74188
3.75741 3.95348 4.09316 4.44478 4.52867 4.65758 4.67256 4.75132
4.81275 4.95341 5.00979 5.02351 5.06986 5.11704 5.20318 5.23846
5.26278 5.33984 5.40429 5.41880 5.47284 5.54021 5.58694 5.60630
5.68758 5.76442 5.76683 5.84600 5.90419 5.93044 5.96017 6.09852
6.16324 6.32394 6.54189 6.77449 6.97396 7.23655 7.49377 7.58424
8.13717 8.19595 8.60005 8.94990 9.42110 9.83561 10.81518
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.016183 B = 0.002754 C = 0.002518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1729.757593 B =10163.311120 C =11117.560154
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.361 6.361
3 C 0.068 3.932
4 H 0.088 0.912
5 C -0.169 4.169
6 C 0.518 3.482
7 O -0.522 6.522
8 N -0.695 5.695
9 C 0.163 3.837
10 C -0.120 4.120
11 C -0.116 4.116
12 C -0.101 4.101
13 C 0.056 3.944
14 H 0.031 0.969
15 N -0.485 5.485
16 C 0.038 3.962
17 C 0.454 3.546
18 O -0.557 6.557
19 N -0.594 5.594
20 C -0.303 4.303
21 H 0.119 0.881
22 C 0.041 3.959
23 N -0.883 5.883
24 Si 0.879 3.121
25 H -0.271 1.271
26 H -0.270 1.270
27 H -0.277 1.277
28 C 0.059 3.941
29 C -0.139 4.139
30 H 0.043 0.957
31 H 0.089 0.911
32 H 0.045 0.955
33 H 0.068 0.932
34 H 0.073 0.927
35 H 0.069 0.931
36 H 0.407 0.593
37 H 0.079 0.921
38 H 0.077 0.923
39 H 0.067 0.933
40 H 0.067 0.933
41 H 0.073 0.927
42 H 0.070 0.930
43 H 0.088 0.912
44 H 0.052 0.948
45 H 0.369 0.631
46 H 0.273 0.727
47 H 0.058 0.942
48 H 0.088 0.912
49 H 0.083 0.917
50 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.282 -15.738 -17.190 23.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.279 6.279
3 C 0.006 3.994
4 H 0.106 0.894
5 C -0.227 4.227
6 C 0.303 3.697
7 O -0.397 6.397
8 N -0.348 5.348
9 C 0.076 3.924
10 C -0.158 4.158
11 C -0.154 4.154
12 C -0.139 4.139
13 C -0.054 4.054
14 H 0.049 0.951
15 N -0.209 5.209
16 C -0.094 4.094
17 C 0.240 3.760
18 O -0.438 6.438
19 N -0.234 5.234
20 C -0.432 4.432
21 H 0.137 0.863
22 C -0.162 4.162
23 N -0.523 5.523
24 Si 0.706 3.294
25 H -0.197 1.197
26 H -0.195 1.195
27 H -0.202 1.202
28 C -0.067 4.067
29 C -0.178 4.178
30 H 0.061 0.939
31 H 0.108 0.892
32 H 0.063 0.937
33 H 0.087 0.913
34 H 0.092 0.908
35 H 0.088 0.912
36 H 0.243 0.757
37 H 0.098 0.902
38 H 0.095 0.905
39 H 0.086 0.914
40 H 0.086 0.914
41 H 0.092 0.908
42 H 0.089 0.911
43 H 0.107 0.893
44 H 0.070 0.930
45 H 0.202 0.798
46 H 0.084 0.916
47 H 0.076 0.924
48 H 0.106 0.894
49 H 0.102 0.898
50 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 2.434 -16.418 -16.999 23.758
hybrid contribution 1.772 0.982 0.513 2.090
sum 4.206 -15.436 -16.486 22.973
Atomic orbital electron populations
1.22884 0.80626 1.03149 1.00180 1.88030 1.19645 1.25227 1.94952
1.21945 0.93797 0.86884 0.96759 0.89382 1.22216 1.03361 1.02037
0.95044 1.20281 0.85886 0.84099 0.79430 1.90697 1.69061 1.29783
1.50124 1.45457 1.20591 1.09457 1.59312 1.21435 0.83193 0.96351
0.91417 1.22325 0.97330 0.98464 0.97718 1.22820 1.01258 0.93058
0.98243 1.21252 1.01493 0.97516 0.93652 1.21724 0.95627 0.92778
0.95313 0.95065 1.62026 1.36431 1.09884 1.12510 1.22139 0.95037
0.94624 0.97564 1.19608 0.89346 0.83355 0.83737 1.90556 1.16565
1.70863 1.65797 1.42215 1.08888 1.28310 1.43949 1.19410 0.93439
1.08161 1.22168 0.86316 1.25032 0.98128 0.96297 0.96734 1.69621
1.34328 1.18740 1.29585 0.86683 0.85136 0.79068 0.78557 1.19696
1.19516 1.20192 1.23576 1.02231 0.86966 0.93928 1.22808 1.02648
0.98484 0.93845 0.93862 0.89231 0.93651 0.91284 0.90782 0.91204
0.75733 0.90211 0.90450 0.91391 0.91426 0.90807 0.91099 0.89346
0.93002 0.79809 0.91643 0.92389 0.89384 0.89805 0.90468
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 10.82 101.05 1.09 1.32 16
2 O -0.36 -4.25 9.89 -55.09 -0.54 -4.79 16
3 C 0.07 0.68 3.13 -27.89 -0.09 0.59 16
4 H 0.09 0.77 7.79 -51.93 -0.40 0.36 16
5 C -0.17 -1.26 9.48 37.16 0.35 -0.91 16
6 C 0.52 6.46 6.66 -10.99 -0.07 6.39 16
7 O -0.52 -8.42 14.68 -14.30 -0.21 -8.63 16
8 N -0.69 -7.69 4.74 -45.87 -0.22 -7.91 16
9 C 0.16 1.88 0.29 -129.93 -0.04 1.84 16
10 C -0.12 -1.21 5.94 -25.36 -0.15 -1.37 16
11 C -0.12 -0.96 6.83 -23.56 -0.16 -1.12 16
12 C -0.10 -0.95 6.50 -27.09 -0.18 -1.12 16
13 C 0.06 0.66 2.03 -69.73 -0.14 0.52 16
14 H 0.03 0.37 7.22 -51.93 -0.37 -0.01 16
15 N -0.49 -7.25 4.83 -226.56 -1.09 -8.34 16
16 C 0.04 0.61 5.02 -4.98 -0.03 0.59 16
17 C 0.45 10.05 7.59 -10.98 -0.08 9.96 16
18 O -0.56 -14.49 15.29 5.55 0.08 -14.41 16
19 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16
20 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16
21 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16
22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16
23 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16
24 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16
25 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16
26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16
27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
28 C 0.06 0.90 5.79 -0.58 0.00 0.89 16
29 C -0.14 -1.77 6.05 -25.21 -0.15 -1.93 16
30 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16
31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16
33 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16
34 H 0.07 0.46 7.92 -51.93 -0.41 0.04 16
35 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16
36 H 0.41 4.11 8.38 -40.82 -0.34 3.77 16
37 H 0.08 0.93 7.02 -51.93 -0.36 0.57 16
38 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16
39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
43 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16
44 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16
45 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16
46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
47 H 0.06 0.91 7.47 -51.93 -0.39 0.53 16
48 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16
49 H 0.08 1.19 7.22 -51.93 -0.37 0.81 16
50 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16
LS Contribution 396.22 15.07 5.97 5.97
Total: -1.00 -34.63 396.22 -8.22 -42.85
By element:
Atomic # 1 Polarization: 19.91 SS G_CDS: -8.32 Total: 11.59 kcal
Atomic # 6 Polarization: 7.93 SS G_CDS: 0.11 Total: 8.04 kcal
Atomic # 7 Polarization: -54.51 SS G_CDS: -0.59 Total: -55.11 kcal
Atomic # 8 Polarization: -27.17 SS G_CDS: -0.67 Total: -27.83 kcal
Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -34.63 -8.22 -42.85 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700854653.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.704 kcal
(2) G-P(sol) polarization free energy of solvation -34.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.333 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.553 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds