Wall clock time and date at job start Tue Mar 31 2020 22:38:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42898 * 114.00425 * 2 1
4 4 H 1.09003 * 109.46685 * 29.99040 * 3 2 1
5 5 C 1.52998 * 109.46646 * 270.00165 * 3 2 1
6 6 C 1.50693 * 109.47378 * 150.00030 * 3 2 1
7 7 O 1.21279 * 120.00206 * 4.99735 * 6 3 2
8 8 N 1.34774 * 119.99692 * 185.00259 * 6 3 2
9 9 C 1.46500 * 120.00116 * 179.97438 * 8 6 3
10 10 C 1.52495 * 112.33205 * 68.79806 * 9 8 6
11 11 C 1.56048 * 102.40840 * 75.43765 * 10 9 8
12 12 C 1.55885 * 105.88781 * 25.45484 * 11 10 9
13 13 C 1.49137 * 104.18986 * 5.32285 * 12 11 10
14 14 H 1.08999 * 105.99507 * 74.60477 * 13 12 11
15 15 N 1.42326 * 131.08035 * 203.69129 * 13 12 11
16 16 C 1.46903 * 111.00349 * 278.23034 * 15 13 12
17 17 C 1.50696 * 109.47177 * 169.99593 * 16 15 13
18 18 O 1.21292 * 120.00262 * 0.02562 * 17 16 15
19 19 N 1.34784 * 119.99627 * 179.97438 * 17 16 15
20 20 C 1.37090 * 119.99714 * 180.02562 * 19 17 16
21 21 H 1.07999 * 120.00232 * 0.02562 * 20 19 17
22 22 C 1.38955 * 119.99992 * 180.02562 * 20 19 17
23 23 N 1.31413 * 120.00236 * 179.97438 * 22 20 19
24 24 Si 1.86803 * 119.99845 * 359.97438 * 22 20 19
25 25 H 1.48498 * 109.47174 * 270.00316 * 24 22 20
26 26 H 1.48501 * 109.47062 * 30.00267 * 24 22 20
27 27 H 1.48504 * 109.46913 * 150.00066 * 24 22 20
28 28 C 1.49728 * 105.65131 * 157.82157 * 15 13 12
29 29 C 1.52723 * 112.81121 * 289.88951 * 9 8 6
30 30 H 1.08996 * 109.46837 * 60.00281 * 1 2 3
31 31 H 1.09005 * 109.47333 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47045 * 300.00196 * 1 2 3
33 33 H 1.09001 * 109.47837 * 59.99408 * 5 3 2
34 34 H 1.09004 * 109.47167 * 179.97438 * 5 3 2
35 35 H 1.09008 * 109.47207 * 299.99361 * 5 3 2
36 36 H 0.96998 * 120.00563 * 359.97438 * 8 6 3
37 37 H 1.08998 * 110.82006 * 317.20396 * 10 9 8
38 38 H 1.09003 * 110.98745 * 193.74460 * 10 9 8
39 39 H 1.08998 * 110.16613 * 266.35229 * 11 10 9
40 40 H 1.08997 * 110.22864 * 144.59342 * 11 10 9
41 41 H 1.09000 * 110.49020 * 246.65130 * 12 11 10
42 42 H 1.08998 * 110.49238 * 123.99650 * 12 11 10
43 43 H 1.09005 * 109.46883 * 49.99762 * 16 15 13
44 44 H 1.09002 * 109.46817 * 290.00212 * 16 15 13
45 45 H 0.96999 * 120.00048 * 0.02562 * 19 17 16
46 46 H 0.97001 * 119.99781 * 179.97438 * 23 22 20
47 47 H 1.08994 * 110.05132 * 111.99745 * 28 15 13
48 48 H 1.09006 * 110.04874 * 233.47244 * 28 15 13
49 49 H 1.08998 * 111.06385 * 40.84855 * 29 9 8
50 50 H 1.09005 * 111.06226 * 164.80800 * 29 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3450 1.9993 0.5137
5 6 2.2177 1.7712 -1.4425
6 6 3.3387 1.2638 0.7104
7 8 3.7897 0.2044 1.0914
8 7 4.0254 2.4039 0.9223
9 6 5.3166 2.3636 1.6134
10 6 6.3992 1.6867 0.7796
11 6 6.7418 2.7819 -0.2779
12 6 6.3684 4.1440 0.3820
13 6 5.9781 3.7806 1.7748
14 1 6.9075 3.5572 2.2985
15 7 5.1470 4.4485 2.7175
16 6 5.8874 5.5092 3.4138
17 6 4.9270 6.3488 4.2160
18 8 3.7423 6.0889 4.2090
19 7 5.3847 7.3879 4.9422
20 6 4.5111 8.1514 5.6725
21 1 3.4562 7.9200 5.6662
22 6 4.9828 9.2230 6.4208
23 7 4.1453 9.9552 7.1204
24 14 6.8075 9.6228 6.4322
25 1 7.4697 8.8817 7.5355
26 1 7.4101 9.2225 5.1353
27 1 6.9931 11.0822 6.6347
28 6 4.6943 3.3918 3.6768
29 6 5.1837 2.0275 3.0972
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.2569 1.8012 -1.9564
34 1 2.6607 2.7671 -1.4426
35 1 2.8830 1.0772 -1.9564
36 1 3.6649 3.2512 0.6173
37 1 6.0121 0.7895 0.2968
38 1 7.2713 1.4508 1.3895
39 1 6.1528 2.6285 -1.1821
40 1 7.8055 2.7579 -0.5143
41 1 5.5303 4.6044 -0.1412
42 1 7.2289 4.8130 0.3892
43 1 6.3959 6.1375 2.6824
44 1 6.6231 5.0606 4.0813
45 1 6.3322 7.5955 4.9482
46 1 4.4747 10.7030 7.6430
47 1 5.1385 3.5622 4.6574
48 1 3.6069 3.3970 3.7527
49 1 4.4415 1.2454 3.2568
50 1 6.1464 1.7434 3.5223
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700854653.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:38:25
Heat of formation + Delta-G solvation = -111.008422 kcal
Electronic energy + Delta-G solvation = -31137.052448 eV
Core-core repulsion = 26971.162071 eV
Total energy + Delta-G solvation = -4165.890378 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.40029 -40.56704 -39.89404 -38.38677 -36.55269 -35.79732 -34.71903 -33.74304
-33.04821 -31.65878 -29.64075 -27.78142 -27.69012 -27.59526 -25.64325 -25.19090
-22.62046 -22.08528 -21.27833 -20.73979 -20.44260 -19.93195 -18.52745 -18.03475
-17.57237 -17.33787 -16.84916 -16.63501 -16.42803 -16.12301 -15.88496 -15.87786
-15.54697 -15.23303 -14.96121 -14.57172 -14.32345 -14.22607 -14.18445 -14.05909
-13.69231 -13.42066 -13.36802 -13.26822 -13.04108 -12.93025 -12.75341 -12.62800
-12.40112 -12.18810 -12.10226 -12.02500 -11.97800 -11.85172 -11.48980 -11.48280
-11.23546 -10.98106 -10.46409 -10.34428 -10.22406 -10.05491 -9.24388 -8.39840
-6.00226 1.30503 1.36076 1.44883 1.60785 1.86107 1.99097 2.23902
2.48640 2.87310 3.00186 3.16348 3.21082 3.63782 3.67034 3.84738
3.92307 3.99061 4.04914 4.13645 4.16769 4.23097 4.37157 4.39267
4.44874 4.46828 4.48629 4.51933 4.57115 4.68237 4.74686 4.76290
4.80269 4.82916 4.83464 4.96424 5.06375 5.09911 5.17791 5.20646
5.31376 5.40832 5.54684 5.61792 5.78935 5.95825 6.05241 6.20207
6.59005 6.62068 6.90869 7.25965 7.42442 8.00184 8.77949
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.016183 B = 0.002754 C = 0.002518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1729.757593 B =10163.311120 C =11117.560154
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.393 6.393
3 C 0.066 3.934
4 H 0.099 0.901
5 C -0.161 4.161
6 C 0.515 3.485
7 O -0.564 6.564
8 N -0.687 5.687
9 C 0.157 3.843
10 C -0.116 4.116
11 C -0.105 4.105
12 C -0.098 4.098
13 C 0.058 3.942
14 H 0.043 0.957
15 N -0.500 5.500
16 C 0.050 3.950
17 C 0.454 3.546
18 O -0.604 6.604
19 N -0.594 5.594
20 C -0.324 4.324
21 H 0.055 0.945
22 C -0.017 4.017
23 N -0.937 5.937
24 Si 0.964 3.036
25 H -0.259 1.259
26 H -0.229 1.229
27 H -0.276 1.276
28 C 0.063 3.937
29 C -0.130 4.130
30 H 0.063 0.937
31 H 0.098 0.902
32 H 0.045 0.955
33 H 0.084 0.916
34 H 0.089 0.911
35 H 0.060 0.940
36 H 0.412 0.588
37 H 0.061 0.939
38 H 0.087 0.913
39 H 0.072 0.928
40 H 0.087 0.913
41 H 0.074 0.926
42 H 0.088 0.912
43 H 0.122 0.878
44 H 0.080 0.920
45 H 0.389 0.611
46 H 0.278 0.722
47 H 0.047 0.953
48 H 0.055 0.945
49 H 0.063 0.937
50 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.863 -15.505 -19.458 25.809
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.312 6.312
3 C 0.005 3.995
4 H 0.117 0.883
5 C -0.219 4.219
6 C 0.301 3.699
7 O -0.442 6.442
8 N -0.339 5.339
9 C 0.070 3.930
10 C -0.155 4.155
11 C -0.143 4.143
12 C -0.136 4.136
13 C -0.052 4.052
14 H 0.061 0.939
15 N -0.223 5.223
16 C -0.081 4.081
17 C 0.241 3.759
18 O -0.487 6.487
19 N -0.237 5.237
20 C -0.454 4.454
21 H 0.073 0.927
22 C -0.215 4.215
23 N -0.578 5.578
24 Si 0.784 3.216
25 H -0.184 1.184
26 H -0.152 1.152
27 H -0.201 1.201
28 C -0.064 4.064
29 C -0.170 4.170
30 H 0.082 0.918
31 H 0.116 0.884
32 H 0.064 0.936
33 H 0.103 0.897
34 H 0.108 0.892
35 H 0.080 0.920
36 H 0.249 0.751
37 H 0.080 0.920
38 H 0.106 0.894
39 H 0.091 0.909
40 H 0.106 0.894
41 H 0.092 0.908
42 H 0.106 0.894
43 H 0.140 0.860
44 H 0.098 0.902
45 H 0.224 0.776
46 H 0.088 0.912
47 H 0.066 0.934
48 H 0.074 0.926
49 H 0.082 0.918
50 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 6.020 -16.184 -19.303 25.900
hybrid contribution 0.465 0.844 1.255 1.582
sum 6.485 -15.340 -18.048 24.559
Atomic orbital electron populations
1.23066 0.78921 1.04139 1.01195 1.87983 1.21635 1.26335 1.95202
1.22072 0.92507 0.86716 0.98241 0.88311 1.22185 1.04232 1.02407
0.93038 1.20789 0.86592 0.83653 0.78853 1.90669 1.70270 1.31265
1.52041 1.45430 1.20526 1.09374 1.58599 1.21554 0.83802 0.96876
0.90782 1.22308 0.96875 0.98288 0.98015 1.22769 1.02590 0.91428
0.97491 1.21323 1.02167 0.98338 0.91740 1.21818 0.95275 0.92077
0.96064 0.93906 1.61906 1.37693 1.09883 1.12827 1.22063 0.93546
0.94485 0.98049 1.20844 0.89800 0.82639 0.82586 1.90543 1.19372
1.71836 1.66982 1.42038 1.09150 1.28453 1.44038 1.18974 0.91749
1.10103 1.24529 0.92724 1.26104 1.04903 0.95195 0.95276 1.69808
1.37725 1.19582 1.30656 0.85384 0.76750 0.78727 0.80779 1.18387
1.15205 1.20139 1.23404 1.00316 0.88683 0.93977 1.22721 1.02679
0.96350 0.95205 0.91831 0.88387 0.93585 0.89668 0.89246 0.92039
0.75098 0.92039 0.89401 0.90908 0.89444 0.90774 0.89364 0.86039
0.90184 0.77599 0.91235 0.93407 0.92640 0.91848 0.88764
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.35 10.82 113.37 1.23 1.57 16
2 O -0.39 -9.29 9.89 -129.99 -1.28 -10.57 16
3 C 0.07 1.30 3.13 29.85 0.09 1.40 16
4 H 0.10 1.69 7.79 -2.39 -0.02 1.67 16
5 C -0.16 -2.17 9.48 71.98 0.68 -1.49 16
6 C 0.51 12.94 6.66 87.66 0.58 13.53 16
7 O -0.56 -18.76 14.68 15.96 0.23 -18.52 16
8 N -0.69 -14.78 4.74 -417.42 -1.98 -16.76 16
9 C 0.16 3.40 0.29 4.83 0.00 3.40 16
10 C -0.12 -2.09 5.94 31.48 0.19 -1.90 16
11 C -0.10 -1.35 6.83 32.65 0.22 -1.12 16
12 C -0.10 -1.43 6.50 30.36 0.20 -1.23 16
13 C 0.06 1.17 2.03 46.01 0.09 1.26 16
14 H 0.04 0.81 7.22 -2.39 -0.02 0.79 16
15 N -0.50 -14.08 4.83 -870.69 -4.21 -18.29 16
16 C 0.05 1.45 5.02 85.56 0.43 1.88 16
17 C 0.45 19.91 7.59 87.65 0.67 20.58 16
18 O -0.60 -32.65 15.29 -3.07 -0.05 -32.70 16
19 N -0.59 -27.45 5.09 -306.98 -1.56 -29.01 16
20 C -0.32 -18.79 10.16 84.04 0.85 -17.93 16
21 H 0.05 3.79 7.39 -2.91 -0.02 3.76 16
22 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16
23 N -0.94 -56.33 13.96 21.66 0.30 -56.03 16
24 Si 0.96 38.27 27.74 68.60 1.90 40.17 16
25 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16
26 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16
27 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16
28 C 0.06 1.92 5.79 86.83 0.50 2.43 16
29 C -0.13 -3.29 6.05 31.58 0.19 -3.10 16
30 H 0.06 0.69 7.87 -2.39 -0.02 0.67 16
31 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16
32 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16
33 H 0.08 0.88 7.87 -2.39 -0.02 0.86 16
34 H 0.09 0.91 7.92 -2.38 -0.02 0.89 16
35 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16
36 H 0.41 7.92 8.38 -92.71 -0.78 7.14 16
37 H 0.06 1.37 7.02 -2.39 -0.02 1.35 16
38 H 0.09 1.39 8.13 -2.39 -0.02 1.37 16
39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
43 H 0.12 2.85 8.07 -2.38 -0.02 2.83 16
44 H 0.08 1.97 7.85 -2.39 -0.02 1.95 16
45 H 0.39 14.77 5.76 -92.71 -0.53 14.24 16
46 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16
47 H 0.05 1.52 7.47 -2.39 -0.02 1.50 16
48 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16
49 H 0.06 1.87 7.22 -2.39 -0.02 1.85 16
50 H 0.09 2.04 8.13 -2.38 -0.02 2.02 16
Total: -1.00 -82.36 396.22 -0.66 -83.02
By element:
Atomic # 1 Polarization: 40.30 SS G_CDS: -0.42 Total: 39.88 kcal
Atomic # 6 Polarization: 12.42 SS G_CDS: 6.40 Total: 18.82 kcal
Atomic # 7 Polarization: -112.64 SS G_CDS: -7.45 Total: -120.09 kcal
Atomic # 8 Polarization: -60.70 SS G_CDS: -1.10 Total: -61.80 kcal
Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal
Total: -82.36 -0.66 -83.02 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700854653.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.993 kcal
(2) G-P(sol) polarization free energy of solvation -82.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.015 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds