Wall clock time and date at job start Tue Mar 31 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47147 * 2 1 4 4 O 1.42897 * 109.47228 * 239.99456 * 2 1 3 5 5 C 1.42900 * 114.00160 * 90.00296 * 4 2 1 6 6 C 1.52999 * 109.47240 * 179.97438 * 5 4 2 7 7 C 1.52996 * 117.49710 * 243.74790 * 6 5 4 8 8 C 1.53000 * 117.49672 * 175.08763 * 6 5 4 9 9 C 1.50700 * 109.46573 * 119.99507 * 2 1 3 10 10 O 1.21277 * 120.00111 * 115.00326 * 9 2 1 11 11 N 1.34778 * 120.00165 * 294.99572 * 9 2 1 12 12 C 1.47426 * 125.64843 * 0.04680 * 11 9 2 13 13 C 1.54909 * 104.83381 * 204.08968 * 12 11 9 14 14 C 1.55157 * 101.57958 * 322.98989 * 13 12 11 15 15 H 1.09002 * 110.72213 * 277.13898 * 14 13 12 16 16 N 1.46904 * 110.86982 * 153.93531 * 14 13 12 17 17 C 1.46900 * 110.99976 * 88.94720 * 16 14 13 18 18 C 1.50699 * 109.47410 * 179.97438 * 17 16 14 19 19 O 1.21300 * 119.99323 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00404 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00120 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00203 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99925 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00042 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99815 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47000 * 90.00589 * 25 23 21 27 27 H 1.48501 * 109.46749 * 209.99911 * 25 23 21 28 28 H 1.48499 * 109.46995 * 330.00302 * 25 23 21 29 29 C 1.47018 * 125.65052 * 180.02562 * 11 9 2 30 30 H 1.08997 * 109.47718 * 300.00604 * 1 2 3 31 31 H 1.09005 * 109.46799 * 60.00851 * 1 2 3 32 32 H 1.09001 * 109.47523 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46797 * 299.99835 * 5 4 2 34 34 H 1.08999 * 109.46874 * 60.00067 * 5 4 2 35 35 H 1.09002 * 115.54995 * 29.41353 * 6 5 4 36 36 H 1.09003 * 117.50089 * 359.97438 * 7 6 5 37 37 H 1.09002 * 117.50130 * 145.01853 * 7 6 5 38 38 H 1.09007 * 117.49333 * 214.97859 * 8 6 5 39 39 H 1.08993 * 117.50203 * 359.97438 * 8 6 5 40 40 H 1.08998 * 110.36876 * 322.93285 * 12 11 9 41 41 H 1.09009 * 110.36320 * 85.13959 * 12 11 9 42 42 H 1.09000 * 111.00466 * 204.91585 * 13 12 11 43 43 H 1.08997 * 111.00194 * 81.06198 * 13 12 11 44 44 H 1.00898 * 111.00020 * 324.99770 * 16 14 13 45 45 H 1.09001 * 109.47267 * 300.00331 * 17 16 14 46 46 H 1.08999 * 109.46882 * 59.99964 * 17 16 14 47 47 H 0.97004 * 119.99660 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99954 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.88222 * 59.56497 * 29 11 9 50 50 H 1.09005 * 110.01447 * 298.47076 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1827 -2.2941 6 6 2.7092 -0.6409 -3.4787 7 6 4.1073 -0.3221 -4.0119 8 6 2.8702 0.0763 -4.8206 9 6 2.0322 -0.7103 1.2306 10 8 2.6528 -1.7466 1.1218 11 7 1.7918 -0.1940 2.4521 12 6 1.0533 1.0518 2.7281 13 6 1.5677 1.5193 4.1125 14 6 1.7456 0.1668 4.8517 15 1 0.7969 -0.1735 5.2669 16 7 2.7628 0.2764 5.9059 17 6 2.1606 0.7032 7.1761 18 6 3.2319 0.8036 8.2312 19 8 4.3838 0.5455 7.9523 20 7 2.9101 1.1802 9.4846 21 6 3.8846 1.2710 10.4446 22 1 4.9102 1.0412 10.1964 23 6 3.5528 1.6598 11.7367 24 7 2.3049 1.9399 12.0387 25 14 4.8808 1.7843 13.0446 26 1 5.4491 3.1562 13.0440 27 1 4.2924 1.4929 14.3766 28 1 5.9563 0.8027 12.7529 29 6 2.2221 -0.7799 3.7299 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.2539 0.6544 -2.5589 34 1 2.9321 0.9511 -2.0450 35 1 2.3879 -1.6823 -3.5000 36 1 4.6644 0.4748 -3.5191 37 1 4.7057 -1.1535 -4.3844 38 1 2.6550 -0.4933 -5.7247 39 1 2.6130 1.1348 -4.8595 40 1 1.2754 1.8008 1.9681 41 1 -0.0186 0.8569 2.7658 42 1 0.8283 2.1440 4.6135 43 1 2.5197 2.0418 4.0194 44 1 3.5044 0.9019 5.6292 45 1 1.6870 1.6761 7.0448 46 1 1.4125 -0.0262 7.4866 47 1 1.9888 1.3862 9.7076 48 1 2.0733 2.2110 12.9407 49 1 3.3087 -0.8637 3.7521 50 1 1.7718 -1.7641 3.8595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713146109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:10 Heat of formation + Delta-G solvation = -82.160967 kcal Electronic energy + Delta-G solvation = -28763.458127 eV Core-core repulsion = 24598.818669 eV Total energy + Delta-G solvation = -4164.639458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55911 -39.00717 -38.33935 -37.66630 -36.76063 -34.84693 -33.84130 -32.16868 -31.25242 -30.47193 -28.91880 -27.54279 -26.31721 -24.82907 -23.75140 -22.87407 -22.80652 -21.25593 -20.99314 -19.63775 -19.31040 -17.94991 -17.78554 -17.14238 -16.51383 -16.20849 -16.04186 -15.91682 -15.28981 -15.15768 -14.63741 -14.54652 -14.30793 -14.00989 -13.81122 -13.71442 -13.63984 -13.39683 -12.90465 -12.81156 -12.67566 -12.56234 -12.41162 -12.04526 -12.02726 -11.92416 -11.66655 -11.50214 -11.45931 -11.38883 -11.06863 -11.01933 -10.89962 -10.74407 -10.40660 -10.23864 -10.15156 -9.67859 -9.53277 -8.85921 -8.52175 -8.13215 -7.98700 -6.44134 -3.84921 2.36465 2.41615 3.16507 3.19369 3.25600 3.31823 3.49589 3.87164 3.98000 4.08290 4.20069 4.30647 4.35993 4.41700 4.47107 4.54722 4.59975 4.63378 4.80695 4.84210 4.95570 5.01822 5.04883 5.14778 5.15548 5.17263 5.19327 5.21127 5.24590 5.26576 5.46298 5.53567 5.65779 5.67023 5.68248 5.70403 5.75973 5.82799 5.90244 5.92867 6.04003 6.23321 6.70719 7.11179 7.25794 7.53254 7.53917 7.97706 8.03767 8.58438 9.15622 9.51351 10.02674 10.73507 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030455 B = 0.001562 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.170053 B =17919.766487 C =18325.887382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.077 3.923 3 H 0.084 0.916 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.153 4.153 7 C -0.176 4.176 8 C -0.174 4.174 9 C 0.529 3.471 10 O -0.515 6.515 11 N -0.618 5.618 12 C 0.099 3.901 13 C -0.168 4.168 14 C 0.080 3.920 15 H 0.095 0.905 16 N -0.657 5.657 17 C 0.052 3.948 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 C 0.117 3.883 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.354 0.646 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.081 0.919 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 2.198 -28.344 29.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 H 0.102 0.898 4 O -0.272 6.272 5 C 0.015 3.985 6 C -0.171 4.171 7 C -0.213 4.213 8 C -0.211 4.211 9 C 0.316 3.684 10 O -0.389 6.389 11 N -0.355 5.355 12 C -0.024 4.024 13 C -0.208 4.208 14 C -0.031 4.031 15 H 0.114 0.886 16 N -0.289 5.289 17 C -0.080 4.080 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.006 4.006 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.175 0.825 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.764 0.592 -28.317 29.368 hybrid contribution -0.310 1.549 0.728 1.740 sum -8.075 2.141 -27.589 28.826 Atomic orbital electron populations 1.22306 0.93459 1.04090 1.03320 1.21789 0.95145 0.96021 0.85482 0.89815 1.88046 1.86474 1.33955 1.18692 1.22125 0.99220 0.91967 0.85228 1.22101 1.00639 1.01133 0.93248 1.23093 0.90824 1.03668 1.03729 1.22993 1.02591 1.01050 0.94438 1.19973 0.80104 0.85450 0.82917 1.90750 1.39439 1.23113 1.85629 1.48406 1.56069 1.25418 1.05571 1.22393 0.96377 0.86010 0.97620 1.23613 1.02870 0.99018 0.95330 1.22611 0.96019 0.93281 0.91219 0.88642 1.59956 1.10721 1.56980 1.01264 1.21693 0.96965 0.99367 0.89996 1.19789 0.89563 0.84445 0.83764 1.90540 1.20694 1.54533 1.80912 1.41851 1.11024 1.59256 1.07788 1.19713 0.91579 1.42902 0.88779 0.87896 1.25257 0.97165 0.97091 0.98345 1.69608 1.16986 1.46259 1.21437 0.85856 0.80312 0.78735 0.79394 1.20430 1.20904 1.19375 1.21918 1.01436 0.96639 0.80587 0.90551 0.91174 0.90954 0.92650 0.93019 0.86653 0.88613 0.88454 0.88332 0.88673 0.90693 0.90737 0.89423 0.90043 0.82542 0.93637 0.89428 0.77462 0.91864 0.90107 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.39 37.16 0.35 -0.80 16 2 C 0.08 0.71 2.48 -27.88 -0.07 0.64 16 3 H 0.08 0.57 7.26 -51.93 -0.38 0.20 16 4 O -0.35 -3.95 9.53 -55.09 -0.52 -4.47 16 5 C 0.09 0.70 6.03 37.16 0.22 0.93 16 6 C -0.15 -1.16 6.05 -90.62 -0.55 -1.71 16 7 C -0.18 -1.18 10.18 -26.69 -0.27 -1.46 16 8 C -0.17 -0.96 10.25 -26.69 -0.27 -1.23 16 9 C 0.53 6.73 7.24 -10.98 -0.08 6.65 16 10 O -0.52 -9.05 16.83 -14.30 -0.24 -9.29 16 11 N -0.62 -6.61 3.33 -170.52 -0.57 -7.17 16 12 C 0.10 0.70 5.34 -2.53 -0.01 0.69 16 13 C -0.17 -1.39 6.67 -24.58 -0.16 -1.56 16 14 C 0.08 0.88 3.24 -65.88 -0.21 0.67 16 15 H 0.10 0.95 7.86 -51.93 -0.41 0.55 16 16 N -0.66 -9.86 5.92 -106.05 -0.63 -10.49 16 17 C 0.05 0.85 6.04 -4.98 -0.03 0.82 16 18 C 0.44 10.07 7.82 -10.99 -0.09 9.98 16 19 O -0.58 -15.62 15.78 5.54 0.09 -15.53 16 20 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 25 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 29 C 0.12 1.42 6.62 -3.07 -0.02 1.40 16 30 H 0.08 0.39 5.56 -51.93 -0.29 0.10 16 31 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.32 7.87 -51.93 -0.41 -0.08 16 34 H 0.05 0.36 7.82 -51.93 -0.41 -0.05 16 35 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 0.61 8.03 -51.93 -0.42 0.20 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.39 7.33 -51.93 -0.38 0.01 16 41 H 0.07 0.41 7.16 -51.92 -0.37 0.04 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.73 7.80 -51.93 -0.41 0.32 16 44 H 0.35 5.54 7.97 -39.29 -0.31 5.23 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 47 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 50 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 410.28 15.07 6.18 6.18 Total: -1.00 -34.74 410.28 -9.72 -44.46 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.24 Total: 10.76 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.44 Total: 7.12 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.53 Total: -55.08 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.68 Total: -29.29 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.74 -9.72 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713146109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.698 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds