Wall clock time and date at job start Tue Mar 31 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47147 * 2 1 4 4 O 1.42897 * 109.47228 * 239.99456 * 2 1 3 5 5 C 1.42900 * 114.00160 * 90.00296 * 4 2 1 6 6 C 1.52999 * 109.47240 * 179.97438 * 5 4 2 7 7 C 1.52996 * 117.49710 * 243.74790 * 6 5 4 8 8 C 1.53000 * 117.49672 * 175.08763 * 6 5 4 9 9 C 1.50700 * 109.46573 * 119.99507 * 2 1 3 10 10 O 1.21277 * 120.00111 * 115.00326 * 9 2 1 11 11 N 1.34778 * 120.00165 * 294.99572 * 9 2 1 12 12 C 1.47426 * 125.64843 * 0.04680 * 11 9 2 13 13 C 1.54909 * 104.83381 * 204.08968 * 12 11 9 14 14 C 1.55157 * 101.57958 * 322.98989 * 13 12 11 15 15 H 1.09002 * 110.72213 * 277.13898 * 14 13 12 16 16 N 1.46904 * 110.86982 * 153.93531 * 14 13 12 17 17 C 1.46900 * 110.99976 * 88.94720 * 16 14 13 18 18 C 1.50699 * 109.47410 * 179.97438 * 17 16 14 19 19 O 1.21300 * 119.99323 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00404 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00120 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00203 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99925 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00042 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99815 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47000 * 90.00589 * 25 23 21 27 27 H 1.48501 * 109.46749 * 209.99911 * 25 23 21 28 28 H 1.48499 * 109.46995 * 330.00302 * 25 23 21 29 29 C 1.47018 * 125.65052 * 180.02562 * 11 9 2 30 30 H 1.08997 * 109.47718 * 300.00604 * 1 2 3 31 31 H 1.09005 * 109.46799 * 60.00851 * 1 2 3 32 32 H 1.09001 * 109.47523 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46797 * 299.99835 * 5 4 2 34 34 H 1.08999 * 109.46874 * 60.00067 * 5 4 2 35 35 H 1.09002 * 115.54995 * 29.41353 * 6 5 4 36 36 H 1.09003 * 117.50089 * 359.97438 * 7 6 5 37 37 H 1.09002 * 117.50130 * 145.01853 * 7 6 5 38 38 H 1.09007 * 117.49333 * 214.97859 * 8 6 5 39 39 H 1.08993 * 117.50203 * 359.97438 * 8 6 5 40 40 H 1.08998 * 110.36876 * 322.93285 * 12 11 9 41 41 H 1.09009 * 110.36320 * 85.13959 * 12 11 9 42 42 H 1.09000 * 111.00466 * 204.91585 * 13 12 11 43 43 H 1.08997 * 111.00194 * 81.06198 * 13 12 11 44 44 H 1.00898 * 111.00020 * 324.99770 * 16 14 13 45 45 H 1.09001 * 109.47267 * 300.00331 * 17 16 14 46 46 H 1.08999 * 109.46882 * 59.99964 * 17 16 14 47 47 H 0.97004 * 119.99660 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99954 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.88222 * 59.56497 * 29 11 9 50 50 H 1.09005 * 110.01447 * 298.47076 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1827 -2.2941 6 6 2.7092 -0.6409 -3.4787 7 6 4.1073 -0.3221 -4.0119 8 6 2.8702 0.0763 -4.8206 9 6 2.0322 -0.7103 1.2306 10 8 2.6528 -1.7466 1.1218 11 7 1.7918 -0.1940 2.4521 12 6 1.0533 1.0518 2.7281 13 6 1.5677 1.5193 4.1125 14 6 1.7456 0.1668 4.8517 15 1 0.7969 -0.1735 5.2669 16 7 2.7628 0.2764 5.9059 17 6 2.1606 0.7032 7.1761 18 6 3.2319 0.8036 8.2312 19 8 4.3838 0.5455 7.9523 20 7 2.9101 1.1802 9.4846 21 6 3.8846 1.2710 10.4446 22 1 4.9102 1.0412 10.1964 23 6 3.5528 1.6598 11.7367 24 7 2.3049 1.9399 12.0387 25 14 4.8808 1.7843 13.0446 26 1 5.4491 3.1562 13.0440 27 1 4.2924 1.4929 14.3766 28 1 5.9563 0.8027 12.7529 29 6 2.2221 -0.7799 3.7299 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.2539 0.6544 -2.5589 34 1 2.9321 0.9511 -2.0450 35 1 2.3879 -1.6823 -3.5000 36 1 4.6644 0.4748 -3.5191 37 1 4.7057 -1.1535 -4.3844 38 1 2.6550 -0.4933 -5.7247 39 1 2.6130 1.1348 -4.8595 40 1 1.2754 1.8008 1.9681 41 1 -0.0186 0.8569 2.7658 42 1 0.8283 2.1440 4.6135 43 1 2.5197 2.0418 4.0194 44 1 3.5044 0.9019 5.6292 45 1 1.6870 1.6761 7.0448 46 1 1.4125 -0.0262 7.4866 47 1 1.9888 1.3862 9.7076 48 1 2.0733 2.2110 12.9407 49 1 3.3087 -0.8637 3.7521 50 1 1.7718 -1.7641 3.8595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713146109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:10 Heat of formation + Delta-G solvation = -107.446256 kcal Electronic energy + Delta-G solvation = -28764.554579 eV Core-core repulsion = 24598.818669 eV Total energy + Delta-G solvation = -4165.735910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.43297 -40.20894 -39.53109 -38.66410 -37.44010 -36.21782 -35.59960 -33.28672 -32.89775 -31.31727 -29.87301 -28.09770 -27.82005 -26.02939 -25.05453 -23.55144 -23.27419 -21.95288 -21.74537 -21.10795 -20.43573 -19.91579 -18.55127 -18.04569 -17.64882 -17.17669 -17.01789 -16.81914 -16.62099 -16.32237 -15.85482 -15.79864 -15.42288 -15.17407 -14.98703 -14.69938 -14.44502 -14.10415 -14.02164 -13.80744 -13.59889 -13.49954 -13.46934 -13.34401 -13.04105 -12.91570 -12.68382 -12.58849 -12.42106 -12.40139 -12.33122 -12.12131 -12.01931 -11.78095 -11.50053 -11.42495 -11.30777 -10.92935 -10.43093 -10.34126 -10.00279 -9.76135 -9.30413 -8.46189 -5.94469 1.38249 1.42547 1.48032 1.54551 1.58085 2.06953 2.29802 2.59252 2.90427 2.96893 3.21500 3.33419 3.45214 3.62094 3.79646 3.83162 3.87892 3.93648 4.01107 4.08195 4.12426 4.25307 4.31036 4.31369 4.36841 4.44896 4.52432 4.58929 4.64327 4.65310 4.71155 4.76014 4.77495 4.80774 4.85490 4.99359 5.00916 5.09248 5.18453 5.19457 5.21460 5.23532 5.41989 5.90156 6.08766 6.11252 6.34943 6.42905 6.61569 7.05463 7.14039 7.57876 8.13856 8.70975 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030455 B = 0.001562 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.170053 B =17919.766487 C =18325.887382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.080 3.920 3 H 0.113 0.887 4 O -0.390 6.390 5 C 0.089 3.911 6 C -0.174 4.174 7 C -0.188 4.188 8 C -0.152 4.152 9 C 0.518 3.482 10 O -0.581 6.581 11 N -0.613 5.613 12 C 0.096 3.904 13 C -0.160 4.160 14 C 0.086 3.914 15 H 0.114 0.886 16 N -0.679 5.679 17 C 0.070 3.930 18 C 0.435 3.565 19 O -0.627 6.627 20 N -0.571 5.571 21 C -0.336 4.336 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.276 1.276 29 C 0.116 3.884 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.347 0.653 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.398 0.602 48 H 0.278 0.722 49 H 0.049 0.951 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 4.621 -29.193 31.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 H 0.131 0.869 4 O -0.309 6.309 5 C 0.013 3.987 6 C -0.192 4.192 7 C -0.225 4.225 8 C -0.189 4.189 9 C 0.307 3.693 10 O -0.460 6.460 11 N -0.348 5.348 12 C -0.025 4.025 13 C -0.199 4.199 14 C -0.025 4.025 15 H 0.132 0.868 16 N -0.311 5.311 17 C -0.062 4.062 18 C 0.222 3.778 19 O -0.514 6.514 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.094 0.906 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.201 1.201 29 C -0.007 4.007 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.167 0.833 45 H 0.097 0.903 46 H 0.125 0.875 47 H 0.232 0.768 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.164 3.061 -29.167 31.039 hybrid contribution 0.445 0.755 0.946 1.289 sum -9.719 3.816 -28.221 30.090 Atomic orbital electron populations 1.22299 0.91141 1.03520 1.05469 1.21933 0.96683 0.96298 0.83185 0.86908 1.88016 1.86939 1.35956 1.19961 1.22295 1.00598 0.91649 0.84138 1.22145 1.01473 1.00789 0.94819 1.23171 0.90989 1.03879 1.04497 1.23080 1.00497 1.01802 0.93504 1.20856 0.79110 0.84921 0.84381 1.90710 1.42498 1.26102 1.86649 1.48474 1.55509 1.26315 1.04475 1.22736 0.97345 0.84723 0.97691 1.23571 1.03397 0.97318 0.95638 1.22605 0.95244 0.94839 0.89807 0.86797 1.59870 1.12001 1.57237 1.01970 1.21537 0.94584 1.01789 0.88274 1.20990 0.90487 0.82042 0.84239 1.90511 1.23300 1.55876 1.81731 1.41903 1.10748 1.59989 1.08233 1.19648 0.91339 1.45102 0.90443 0.90568 1.25975 0.99287 0.96137 0.99567 1.69656 1.18024 1.46004 1.22181 0.84971 0.77702 0.78721 0.77205 1.19547 1.19515 1.20100 1.21778 0.99518 0.97041 0.82396 0.88426 0.88896 0.92907 0.90305 0.92320 0.88399 0.88402 0.88731 0.87466 0.87039 0.87870 0.87906 0.86889 0.90846 0.83327 0.90324 0.87500 0.76806 0.91286 0.93288 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.39 71.98 0.68 -1.04 16 2 C 0.08 1.33 2.48 29.85 0.07 1.40 16 3 H 0.11 1.17 7.26 -2.39 -0.02 1.16 16 4 O -0.39 -8.59 9.53 -129.99 -1.24 -9.82 16 5 C 0.09 1.25 6.03 71.98 0.43 1.68 16 6 C -0.17 -2.57 6.05 -10.79 -0.07 -2.64 16 7 C -0.19 -2.47 10.18 30.62 0.31 -2.15 16 8 C -0.15 -1.42 10.25 30.62 0.31 -1.11 16 9 C 0.52 13.21 7.24 87.66 0.63 13.84 16 10 O -0.58 -21.69 16.83 15.97 0.27 -21.42 16 11 N -0.61 -12.43 3.33 -811.79 -2.70 -15.13 16 12 C 0.10 0.99 5.34 86.85 0.46 1.45 16 13 C -0.16 -2.08 6.67 31.99 0.21 -1.87 16 14 C 0.09 1.72 3.24 46.10 0.15 1.87 16 15 H 0.11 1.91 7.86 -2.39 -0.02 1.89 16 16 N -0.68 -19.87 5.92 -489.44 -2.90 -22.77 16 17 C 0.07 2.16 6.04 85.56 0.52 2.68 16 18 C 0.43 20.05 7.82 87.66 0.69 20.73 16 19 O -0.63 -34.64 15.78 -3.09 -0.05 -34.69 16 20 N -0.57 -28.53 5.29 -306.99 -1.62 -30.16 16 21 C -0.34 -18.90 9.68 84.04 0.81 -18.09 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 24 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 25 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 29 C 0.12 2.87 6.62 86.73 0.57 3.45 16 30 H 0.10 0.56 5.56 -2.39 -0.01 0.54 16 31 H 0.09 0.56 7.87 -2.38 -0.02 0.54 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.70 7.87 -2.39 -0.02 0.68 16 34 H 0.06 0.71 7.82 -2.39 -0.02 0.69 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.10 1.21 8.03 -2.39 -0.02 1.19 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.56 7.33 -2.39 -0.02 0.54 16 41 H 0.10 0.58 7.16 -2.38 -0.02 0.56 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.12 7.80 -2.39 -0.02 1.10 16 44 H 0.35 10.89 7.97 -89.70 -0.71 10.17 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.11 2.94 8.08 -2.39 -0.02 2.92 16 47 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 48 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 49 H 0.05 1.51 8.03 -2.39 -0.02 1.49 16 50 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -80.87 410.28 -0.16 -81.03 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.49 Total: 36.38 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 6.26 Total: 20.17 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -6.94 Total: -116.29 kcal Atomic # 8 Polarization: -64.92 SS G_CDS: -1.02 Total: -65.93 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -80.87 -0.16 -81.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713146109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.417 kcal (2) G-P(sol) polarization free energy of solvation -80.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds