Wall clock time and date at job start Wed Apr 1 2020 00:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46961 * 2 1 4 4 C 1.46494 * 119.99572 * 269.99722 * 3 2 1 5 5 C 1.53005 * 109.47090 * 270.00015 * 4 3 2 6 6 N 1.46898 * 109.47322 * 180.02562 * 5 4 3 7 7 C 1.46899 * 111.00173 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47258 * 180.02562 * 7 6 5 9 9 O 1.21297 * 119.99791 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99847 * 180.02562 * 8 7 6 11 11 C 1.37100 * 119.99684 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99730 * 179.97438 * 11 10 8 14 14 N 1.31405 * 120.00160 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99554 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47072 * 90.00582 * 15 13 11 17 17 H 1.48502 * 109.46560 * 210.00018 * 15 13 11 18 18 H 1.48500 * 109.47332 * 329.99913 * 15 13 11 19 19 C 1.34770 * 120.00226 * 89.99529 * 3 2 1 20 20 O 1.21280 * 120.00096 * 180.02562 * 19 3 2 21 21 C 1.50702 * 119.99949 * 0.02562 * 19 3 2 22 22 H 1.08996 * 115.56575 * 31.37002 * 21 19 3 23 23 C 1.53187 * 117.52070 * 177.14537 * 21 19 3 24 24 C 1.52110 * 59.83911 * 107.39746 * 23 21 19 25 25 C 1.53703 * 121.73793 * 111.12681 * 24 23 21 26 26 C 1.54698 * 103.69513 * 143.46286 * 25 24 23 27 27 O 1.44499 * 104.86557 * 23.84614 * 26 25 24 28 28 C 1.44635 * 105.46597 * 320.01831 * 27 26 25 29 29 H 1.08994 * 109.47232 * 300.00432 * 1 2 3 30 30 H 1.09000 * 109.46514 * 60.00430 * 1 2 3 31 31 H 1.09001 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47232 * 239.99568 * 2 1 3 33 33 H 1.09000 * 109.46514 * 119.99569 * 2 1 3 34 34 H 1.09002 * 109.47659 * 30.00058 * 4 3 2 35 35 H 1.09002 * 109.47291 * 150.00284 * 4 3 2 36 36 H 1.09002 * 109.46961 * 299.99951 * 5 4 3 37 37 H 1.08994 * 109.47030 * 60.00286 * 5 4 3 38 38 H 1.00903 * 111.00010 * 303.95453 * 6 5 4 39 39 H 1.08995 * 109.47574 * 300.00281 * 7 6 5 40 40 H 1.09004 * 109.46694 * 60.00544 * 7 6 5 41 41 H 0.96993 * 120.00506 * 359.97438 * 10 8 7 42 42 H 0.97005 * 119.99939 * 179.97438 * 14 13 11 43 43 H 1.09000 * 117.51844 * 214.84876 * 23 21 19 44 44 H 1.08996 * 117.52547 * 359.94607 * 23 21 19 45 45 H 1.08997 * 110.58564 * 262.01621 * 25 24 23 46 46 H 1.09005 * 110.58012 * 24.91325 * 25 24 23 47 47 H 1.08995 * 110.36127 * 142.69485 * 26 25 24 48 48 H 1.09006 * 110.36105 * 264.88895 * 26 25 24 49 49 H 1.08993 * 110.42321 * 280.88394 * 28 27 26 50 50 H 1.08996 * 110.41465 * 158.41858 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9526 2.5242 -2.9823 7 6 5.3336 2.3157 -3.4378 8 6 5.5472 3.0402 -4.7419 9 8 4.6385 3.6688 -5.2423 10 7 6.7478 2.9896 -5.3520 11 6 6.9419 3.6483 -6.5387 12 1 6.1329 4.2080 -6.9843 13 6 8.1800 3.5966 -7.1675 14 7 9.1645 2.9160 -6.6251 15 14 8.4446 4.4946 -8.7840 16 1 8.9186 5.8752 -8.5114 17 1 9.4611 3.7725 -9.5906 18 1 7.1647 4.5498 -9.5350 19 6 2.2429 2.0167 1.1671 20 8 2.6467 3.1603 1.1671 21 6 1.9922 1.3061 2.4723 22 1 2.1544 0.2284 2.4598 23 6 2.3296 2.0579 3.7637 24 6 0.8784 1.8416 3.3621 25 6 -0.0477 0.9029 4.1518 26 6 -1.4194 1.6166 4.1042 27 8 -1.3587 2.4586 2.9314 28 6 -0.0204 3.0068 2.9191 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 4.3883 2.2155 -0.9507 37 1 3.8745 0.7621 -1.8406 38 1 3.2913 2.2323 -3.6863 39 1 6.0253 2.7031 -2.6899 40 1 5.5121 1.2499 -3.5804 41 1 7.4745 2.4873 -4.9517 42 1 10.0287 2.8796 -7.0643 43 1 2.7129 1.4743 4.6006 44 1 2.7336 3.0657 3.6689 45 1 -0.1064 -0.0727 3.6693 46 1 0.2962 0.8022 5.1813 47 1 -2.2233 0.8870 4.0061 48 1 -1.5639 2.2208 4.9999 49 1 0.0575 3.8358 3.6224 50 1 0.2476 3.3329 1.9142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715766388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:51 Heat of formation + Delta-G solvation = -84.722327 kcal Electronic energy + Delta-G solvation = -29439.095038 eV Core-core repulsion = 25274.344511 eV Total energy + Delta-G solvation = -4164.750527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05378 -39.40672 -38.26069 -36.87345 -35.98696 -35.24187 -33.81456 -31.41600 -31.12069 -30.84372 -29.22475 -27.79801 -26.33901 -24.68636 -23.90865 -23.27539 -23.16901 -21.88010 -20.29494 -19.26224 -18.72238 -17.86552 -17.67563 -16.81730 -16.62113 -16.26131 -16.08654 -15.58860 -15.53708 -14.98473 -14.57709 -14.48401 -14.26529 -14.09450 -13.88347 -13.73219 -13.37459 -13.35046 -13.26123 -13.00637 -12.76003 -12.58232 -12.24408 -12.06237 -11.98438 -11.93714 -11.52798 -11.49630 -11.48100 -11.39042 -11.12215 -10.97748 -10.80216 -10.51598 -10.37518 -10.19755 -10.12758 -9.92793 -9.48657 -8.95764 -8.42737 -8.04690 -7.93607 -6.39471 -3.80188 2.17032 2.62493 3.19956 3.26160 3.28252 3.34288 3.58496 3.81956 3.93487 4.07727 4.15570 4.28527 4.38609 4.39037 4.45447 4.60254 4.66073 4.82400 4.90984 4.95343 4.99602 5.10099 5.17208 5.20018 5.21750 5.22042 5.27900 5.30505 5.36090 5.39419 5.42736 5.46578 5.48956 5.50591 5.66780 5.77531 5.88627 5.90025 5.98106 6.02909 6.26492 6.33460 6.34846 7.13276 7.20753 7.57481 7.67158 7.96552 8.08735 8.63750 9.20154 9.56712 10.08282 10.78329 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028895 B = 0.001724 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.777996 B =16241.412613 C =16381.292785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.117 3.883 5 C 0.048 3.952 6 N -0.665 5.665 7 C 0.053 3.947 8 C 0.441 3.559 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.543 3.457 20 O -0.529 6.529 21 C -0.173 4.173 22 H 0.126 0.874 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.120 4.120 26 C 0.045 3.955 27 O -0.371 6.371 28 C 0.079 3.921 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.025 0.975 38 H 0.348 0.652 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 -11.352 24.755 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.338 5.338 4 C -0.005 4.005 5 C -0.082 4.082 6 N -0.298 5.298 7 C -0.079 4.079 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 C 0.330 3.670 20 O -0.405 6.405 21 C -0.194 4.194 22 H 0.144 0.856 23 C -0.164 4.164 24 C -0.136 4.136 25 C -0.157 4.157 26 C -0.032 4.032 27 O -0.289 6.289 28 C 0.003 3.997 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.167 0.833 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.111 0.889 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.682 -9.700 24.458 31.701 hybrid contribution 0.973 -1.161 -0.759 1.695 sum -16.709 -10.861 23.699 30.964 Atomic orbital electron populations 1.22214 0.95359 1.02279 1.03216 1.21626 0.94858 0.82227 1.03184 1.47856 1.65575 1.14481 1.05908 1.21421 0.95845 0.99486 0.83794 1.22260 0.97043 0.95688 0.93245 1.59925 1.03983 1.60987 1.04925 1.21653 0.90872 0.98189 0.97223 1.19796 0.84213 0.86401 0.86912 1.90523 1.42595 1.46398 1.67139 1.41857 1.10698 1.46132 1.21386 1.19716 0.97912 1.27576 0.97653 0.87895 1.25267 0.95167 0.97647 0.99916 1.69614 1.03142 1.41451 1.40161 0.85847 0.78202 0.79059 0.81108 1.20383 1.20962 1.19430 1.19556 0.76997 0.86111 0.84295 1.90747 1.45114 1.17593 1.87080 1.22382 1.05738 1.00520 0.90742 0.85622 1.22981 0.95035 1.02797 0.95626 1.22205 0.91044 0.99208 1.01112 1.22458 0.94247 0.98636 1.00399 1.23435 0.97207 0.93392 0.89124 1.89208 1.30535 1.64284 1.44893 1.22848 0.80556 0.93597 1.02724 0.91739 0.92105 0.91593 0.90165 0.90406 0.90437 0.88608 0.90780 0.95677 0.83254 0.89576 0.93925 0.77462 0.91900 0.87454 0.86836 0.90066 0.89752 0.88925 0.92050 0.91138 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 2 C 0.10 0.71 5.96 -4.04 -0.02 0.69 16 3 N -0.61 -6.12 2.47 -173.69 -0.43 -6.55 16 4 C 0.12 1.40 5.67 -4.04 -0.02 1.38 16 5 C 0.05 0.65 6.01 -3.82 -0.02 0.63 16 6 N -0.67 -11.34 6.12 -115.06 -0.70 -12.04 16 7 C 0.05 0.99 6.17 -4.98 -0.03 0.96 16 8 C 0.44 10.76 7.82 -10.99 -0.09 10.67 16 9 O -0.58 -16.25 15.78 5.54 0.09 -16.16 16 10 N -0.56 -14.66 5.29 -10.96 -0.06 -14.72 16 11 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 12 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 15 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.54 6.20 6.24 -10.99 -0.07 6.13 16 20 O -0.53 -8.11 15.43 5.56 0.09 -8.02 16 21 C -0.17 -1.37 5.25 -92.04 -0.48 -1.86 16 22 H 0.13 0.73 6.33 -51.93 -0.33 0.40 16 23 C -0.13 -0.91 9.81 -27.09 -0.27 -1.18 16 24 C -0.13 -0.97 2.51 -154.61 -0.39 -1.36 16 25 C -0.12 -0.59 6.88 -25.47 -0.18 -0.77 16 26 C 0.05 0.27 7.65 38.05 0.29 0.56 16 27 O -0.37 -3.59 11.65 -35.23 -0.41 -4.00 16 28 C 0.08 0.73 7.28 37.51 0.27 1.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 33 H 0.08 0.41 5.95 -51.93 -0.31 0.10 16 34 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.10 1.38 7.42 -51.93 -0.39 1.00 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.35 5.87 8.43 -39.29 -0.33 5.54 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.11 1.00 7.68 -51.93 -0.40 0.60 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.10 1.09 6.59 -51.93 -0.34 0.75 16 LS Contribution 411.09 15.07 6.20 6.20 Total: -1.00 -34.59 411.09 -8.66 -43.25 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -8.26 Total: 11.93 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.86 Total: 7.95 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.47 Total: -57.49 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.24 Total: -28.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.59 -8.66 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715766388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.475 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds