Wall clock time and date at job start Wed Apr 1 2020 00:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46961 * 2 1 4 4 C 1.46494 * 119.99572 * 269.99722 * 3 2 1 5 5 C 1.53005 * 109.47090 * 270.00015 * 4 3 2 6 6 N 1.46898 * 109.47322 * 180.02562 * 5 4 3 7 7 C 1.46899 * 111.00173 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47258 * 180.02562 * 7 6 5 9 9 O 1.21297 * 119.99791 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99847 * 180.02562 * 8 7 6 11 11 C 1.37100 * 119.99684 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99730 * 179.97438 * 11 10 8 14 14 N 1.31405 * 120.00160 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99554 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47072 * 90.00582 * 15 13 11 17 17 H 1.48502 * 109.46560 * 210.00018 * 15 13 11 18 18 H 1.48500 * 109.47332 * 329.99913 * 15 13 11 19 19 C 1.34770 * 120.00226 * 89.99529 * 3 2 1 20 20 O 1.21280 * 120.00096 * 180.02562 * 19 3 2 21 21 C 1.50702 * 119.99949 * 0.02562 * 19 3 2 22 22 H 1.08996 * 115.56575 * 31.37002 * 21 19 3 23 23 C 1.53187 * 117.52070 * 177.14537 * 21 19 3 24 24 C 1.52110 * 59.83911 * 107.39746 * 23 21 19 25 25 C 1.53703 * 121.73793 * 111.12681 * 24 23 21 26 26 C 1.54698 * 103.69513 * 143.46286 * 25 24 23 27 27 O 1.44499 * 104.86557 * 23.84614 * 26 25 24 28 28 C 1.44635 * 105.46597 * 320.01831 * 27 26 25 29 29 H 1.08994 * 109.47232 * 300.00432 * 1 2 3 30 30 H 1.09000 * 109.46514 * 60.00430 * 1 2 3 31 31 H 1.09001 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47232 * 239.99568 * 2 1 3 33 33 H 1.09000 * 109.46514 * 119.99569 * 2 1 3 34 34 H 1.09002 * 109.47659 * 30.00058 * 4 3 2 35 35 H 1.09002 * 109.47291 * 150.00284 * 4 3 2 36 36 H 1.09002 * 109.46961 * 299.99951 * 5 4 3 37 37 H 1.08994 * 109.47030 * 60.00286 * 5 4 3 38 38 H 1.00903 * 111.00010 * 303.95453 * 6 5 4 39 39 H 1.08995 * 109.47574 * 300.00281 * 7 6 5 40 40 H 1.09004 * 109.46694 * 60.00544 * 7 6 5 41 41 H 0.96993 * 120.00506 * 359.97438 * 10 8 7 42 42 H 0.97005 * 119.99939 * 179.97438 * 14 13 11 43 43 H 1.09000 * 117.51844 * 214.84876 * 23 21 19 44 44 H 1.08996 * 117.52547 * 359.94607 * 23 21 19 45 45 H 1.08997 * 110.58564 * 262.01621 * 25 24 23 46 46 H 1.09005 * 110.58012 * 24.91325 * 25 24 23 47 47 H 1.08995 * 110.36127 * 142.69485 * 26 25 24 48 48 H 1.09006 * 110.36105 * 264.88895 * 26 25 24 49 49 H 1.08993 * 110.42321 * 280.88394 * 28 27 26 50 50 H 1.08996 * 110.41465 * 158.41858 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9526 2.5242 -2.9823 7 6 5.3336 2.3157 -3.4378 8 6 5.5472 3.0402 -4.7419 9 8 4.6385 3.6688 -5.2423 10 7 6.7478 2.9896 -5.3520 11 6 6.9419 3.6483 -6.5387 12 1 6.1329 4.2080 -6.9843 13 6 8.1800 3.5966 -7.1675 14 7 9.1645 2.9160 -6.6251 15 14 8.4446 4.4946 -8.7840 16 1 8.9186 5.8752 -8.5114 17 1 9.4611 3.7725 -9.5906 18 1 7.1647 4.5498 -9.5350 19 6 2.2429 2.0167 1.1671 20 8 2.6467 3.1603 1.1671 21 6 1.9922 1.3061 2.4723 22 1 2.1544 0.2284 2.4598 23 6 2.3296 2.0579 3.7637 24 6 0.8784 1.8416 3.3621 25 6 -0.0477 0.9029 4.1518 26 6 -1.4194 1.6166 4.1042 27 8 -1.3587 2.4586 2.9314 28 6 -0.0204 3.0068 2.9191 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 4.3883 2.2155 -0.9507 37 1 3.8745 0.7621 -1.8406 38 1 3.2913 2.2323 -3.6863 39 1 6.0253 2.7031 -2.6899 40 1 5.5121 1.2499 -3.5804 41 1 7.4745 2.4873 -4.9517 42 1 10.0287 2.8796 -7.0643 43 1 2.7129 1.4743 4.6006 44 1 2.7336 3.0657 3.6689 45 1 -0.1064 -0.0727 3.6693 46 1 0.2962 0.8022 5.1813 47 1 -2.2233 0.8870 4.0061 48 1 -1.5639 2.2208 4.9999 49 1 0.0575 3.8358 3.6224 50 1 0.2476 3.3329 1.9142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715766388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:50 Heat of formation + Delta-G solvation = -110.585639 kcal Electronic energy + Delta-G solvation = -29440.216555 eV Core-core repulsion = 25274.344511 eV Total energy + Delta-G solvation = -4165.872044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76997 -40.26438 -40.03863 -37.81664 -36.73163 -36.52484 -35.80981 -33.31000 -32.18259 -31.32625 -30.25187 -28.54562 -27.81428 -26.11834 -24.89689 -24.11568 -23.75244 -22.84391 -21.18512 -20.84273 -19.95072 -19.47590 -18.42679 -17.92793 -17.50298 -17.35635 -17.08400 -16.76728 -16.49888 -16.26157 -15.94584 -15.72501 -15.47804 -15.21235 -14.90637 -14.85237 -14.52365 -14.34318 -13.97419 -13.84456 -13.76186 -13.49913 -13.34537 -13.32368 -13.24696 -12.93862 -12.77669 -12.64524 -12.43566 -12.43543 -12.15524 -12.12290 -12.08212 -11.89157 -11.53017 -11.41276 -11.08254 -10.76241 -10.72472 -10.41762 -10.04200 -9.78351 -9.40380 -8.48459 -5.97606 1.37108 1.37217 1.40975 1.53983 1.82197 2.01570 2.28511 2.65364 2.94652 2.99912 3.18359 3.25256 3.49888 3.53154 3.73380 3.77664 3.87713 3.99718 4.06239 4.06552 4.23260 4.27278 4.35583 4.39948 4.41078 4.44854 4.46331 4.54486 4.55563 4.62346 4.71282 4.77463 4.82247 4.85521 4.89121 4.94632 4.96099 5.01108 5.05528 5.13488 5.38191 5.39177 5.50046 5.77894 5.81880 6.04041 6.32005 6.38513 6.57397 7.10020 7.12329 7.52804 8.08021 8.68940 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028895 B = 0.001724 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.777996 B =16241.412613 C =16381.292785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.123 3.877 5 C 0.060 3.940 6 N -0.684 5.684 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.995 3.005 16 H -0.272 1.272 17 H -0.269 1.269 18 H -0.272 1.272 19 C 0.533 3.467 20 O -0.581 6.581 21 C -0.175 4.175 22 H 0.157 0.843 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.109 4.109 26 C 0.036 3.964 27 O -0.397 6.397 28 C 0.077 3.923 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.349 0.651 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.139 0.861 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.471 -14.163 26.138 34.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.334 5.334 4 C -0.001 4.001 5 C -0.070 4.070 6 N -0.318 5.318 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.193 1.193 18 H -0.197 1.197 19 C 0.323 3.677 20 O -0.461 6.461 21 C -0.195 4.195 22 H 0.174 0.826 23 C -0.161 4.161 24 C -0.130 4.130 25 C -0.147 4.147 26 C -0.040 4.040 27 O -0.316 6.316 28 C 0.000 4.000 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.168 0.832 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.157 0.843 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.714 -12.567 25.870 33.779 hybrid contribution 0.910 -0.267 -1.161 1.499 sum -16.804 -12.835 24.709 32.522 Atomic orbital electron populations 1.22154 0.95082 1.03312 1.01870 1.21919 0.95010 0.80262 1.05036 1.47968 1.64921 1.15711 1.04823 1.21208 0.95472 0.98063 0.85329 1.22179 0.97390 0.96573 0.90880 1.59868 1.03189 1.62571 1.06126 1.21491 0.92096 0.98908 0.93903 1.20813 0.83010 0.85538 0.88195 1.90491 1.43699 1.48057 1.68693 1.41918 1.11479 1.46324 1.21147 1.19690 0.98169 1.29329 0.99379 0.90294 1.26072 0.94373 0.97924 1.02916 1.69672 1.03484 1.41572 1.41297 0.84902 0.78137 0.78094 0.77027 1.19763 1.19312 1.19705 1.20266 0.75977 0.85701 0.85749 1.90719 1.47537 1.19956 1.87890 1.22451 1.06537 1.01652 0.88903 0.82563 1.23054 0.94936 1.02002 0.96147 1.22202 0.91037 0.98830 1.00905 1.22488 0.92491 0.98299 1.01382 1.23712 0.98635 0.93508 0.88132 1.89178 1.30527 1.65123 1.46792 1.22739 0.81446 0.94849 1.00960 0.92955 0.93618 0.89268 0.88929 0.87904 0.88683 0.92012 0.92457 0.93034 0.83194 0.88553 0.90971 0.76936 0.91227 0.84306 0.89324 0.88510 0.87445 0.87364 0.91238 0.91159 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 71.98 0.74 -1.09 16 2 C 0.10 1.10 5.96 86.38 0.51 1.61 16 3 N -0.60 -11.80 2.47 -821.81 -2.03 -13.83 16 4 C 0.12 2.97 5.67 86.38 0.49 3.46 16 5 C 0.06 1.57 6.01 86.31 0.52 2.09 16 6 N -0.68 -23.23 6.12 -517.93 -3.17 -26.41 16 7 C 0.07 2.49 6.17 85.56 0.53 3.02 16 8 C 0.44 21.64 7.82 87.66 0.69 22.32 16 9 O -0.62 -35.78 15.78 -3.08 -0.05 -35.83 16 10 N -0.57 -30.21 5.29 -306.98 -1.62 -31.83 16 11 C -0.34 -19.55 9.68 84.04 0.81 -18.73 16 12 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -50.28 13.05 21.66 0.28 -50.00 16 15 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C 0.53 12.30 6.24 87.66 0.55 12.84 16 20 O -0.58 -19.03 15.43 -3.03 -0.05 -19.08 16 21 C -0.17 -2.48 5.25 -11.71 -0.06 -2.54 16 22 H 0.16 1.20 6.33 -2.39 -0.02 1.18 16 23 C -0.12 -1.60 9.81 30.36 0.30 -1.30 16 24 C -0.13 -1.68 2.51 -52.25 -0.13 -1.81 16 25 C -0.11 -0.73 6.88 31.41 0.22 -0.51 16 26 C 0.04 0.36 7.65 72.56 0.56 0.91 16 27 O -0.40 -7.66 11.65 -148.98 -1.74 -9.40 16 28 C 0.08 1.48 7.28 72.21 0.53 2.01 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.10 0.66 5.95 -2.39 -0.01 0.64 16 34 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16 35 H 0.06 1.92 7.42 -2.39 -0.02 1.91 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.35 11.74 8.43 -89.69 -0.76 10.98 16 39 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 42 H 0.28 14.19 8.31 -92.70 -0.77 13.42 16 43 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.09 1.62 7.68 -2.39 -0.02 1.60 16 45 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 47 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.06 1.61 6.59 -2.39 -0.02 1.59 16 Total: -1.00 -78.82 411.09 -0.18 -79.00 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.53 Total: 39.70 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 6.70 Total: 22.03 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -6.54 Total: -122.07 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -1.83 Total: -64.31 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -78.82 -0.18 -79.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715766388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.587 kcal (2) G-P(sol) polarization free energy of solvation -78.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds