Wall clock time and date at job start Tue Mar 31 2020 22:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46687 * 2 1 4 4 O 1.42905 * 109.46797 * 240.00548 * 2 1 3 5 5 C 1.42898 * 114.00161 * 89.99734 * 4 2 1 6 6 C 1.53001 * 109.47090 * 179.97438 * 5 4 2 7 7 C 1.52995 * 117.49767 * 243.74972 * 6 5 4 8 8 C 1.52993 * 117.49691 * 175.08923 * 6 5 4 9 9 C 1.50695 * 109.47267 * 120.00202 * 2 1 3 10 10 O 1.21283 * 119.99580 * 114.99989 * 9 2 1 11 11 N 1.34770 * 120.00171 * 295.00060 * 9 2 1 12 12 C 1.46504 * 120.00356 * 179.97438 * 11 9 2 13 13 C 1.52995 * 109.47441 * 180.02562 * 12 11 9 14 14 H 1.09007 * 112.78756 * 284.19096 * 13 12 11 15 15 C 1.53516 * 113.47725 * 153.38408 * 13 12 11 16 16 C 1.53513 * 83.57411 * 219.20752 * 15 13 12 17 17 N 1.47473 * 113.47971 * 55.00071 * 13 12 11 18 18 C 1.46900 * 111.00093 * 253.47466 * 17 13 12 19 19 C 1.50703 * 109.47111 * 198.37096 * 18 17 13 20 20 O 1.21292 * 119.99715 * 353.84417 * 19 18 17 21 21 N 1.34779 * 120.00299 * 173.83875 * 19 18 17 22 22 C 1.37088 * 119.99976 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00681 * 0.02562 * 22 21 19 24 24 C 1.38958 * 119.99885 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00121 * 179.72432 * 24 22 21 26 26 Si 1.86794 * 119.99827 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47542 * 89.99517 * 26 24 22 28 28 H 1.48502 * 109.47160 * 209.99816 * 26 24 22 29 29 H 1.48501 * 109.46989 * 329.99644 * 26 24 22 30 30 H 1.09000 * 109.47244 * 299.99474 * 1 2 3 31 31 H 1.09006 * 109.47524 * 59.99725 * 1 2 3 32 32 H 1.09000 * 109.47200 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47262 * 299.99898 * 5 4 2 34 34 H 1.09009 * 109.46748 * 59.99613 * 5 4 2 35 35 H 1.09001 * 115.54793 * 29.41806 * 6 5 4 36 36 H 1.08998 * 117.50551 * 359.97438 * 7 6 5 37 37 H 1.08998 * 117.49891 * 145.02864 * 7 6 5 38 38 H 1.09004 * 117.50332 * 214.98045 * 8 6 5 39 39 H 1.09000 * 117.50318 * 359.97375 * 8 6 5 40 40 H 0.97001 * 120.00183 * 0.02562 * 11 9 2 41 41 H 1.08999 * 109.46572 * 60.00043 * 12 11 9 42 42 H 1.09003 * 109.47271 * 300.00319 * 12 11 9 43 43 H 1.08999 * 114.16708 * 105.55980 * 15 13 12 44 44 H 1.08993 * 114.34124 * 332.86981 * 15 13 12 45 45 H 1.08996 * 113.47586 * 271.25878 * 16 15 13 46 46 H 1.08994 * 113.52997 * 140.79831 * 16 15 13 47 47 H 1.08995 * 109.47581 * 78.37363 * 18 17 13 48 48 H 1.09002 * 109.47110 * 318.36770 * 18 17 13 49 49 H 0.96996 * 119.99291 * 0.02562 * 21 19 18 50 50 H 0.97001 * 120.00133 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2000 0.1831 -2.2942 6 6 2.7089 -0.6404 -3.4790 7 6 4.1070 -0.3215 -4.0123 8 6 2.8697 0.0770 -4.8207 9 6 2.0324 -0.7104 1.2304 10 8 2.6530 -1.7467 1.1213 11 7 1.7920 -0.1943 2.4519 12 6 2.2799 -0.8852 3.6481 13 6 1.8747 -0.0954 4.8942 14 1 2.4853 0.7945 5.0471 15 6 1.7362 -0.9654 6.1515 16 6 0.5270 -0.0626 6.4332 17 7 0.4256 0.1647 4.9796 18 6 0.1253 1.5725 4.6865 19 6 -1.2474 1.9123 5.2075 20 8 -1.9545 1.0406 5.6671 21 7 -1.6892 3.1849 5.1630 22 6 -2.9376 3.4940 5.6374 23 1 -3.5671 2.7180 6.0474 24 6 -3.3933 4.8059 5.5910 25 7 -4.5922 5.1014 6.0408 26 14 -2.3050 6.1480 4.8814 27 1 -2.5575 6.2708 3.4232 28 1 -2.6131 7.4390 5.5475 29 1 -0.8792 5.8013 5.1094 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2537 0.6548 -2.5589 34 1 2.9319 0.9515 -2.0450 35 1 2.3875 -1.6817 -3.5003 36 1 4.6641 0.4753 -3.5195 37 1 4.7052 -1.1529 -4.3851 38 1 2.6545 -0.4924 -5.7249 39 1 2.6125 1.1355 -4.8595 40 1 1.2953 0.6343 2.5392 41 1 3.3661 -0.9638 3.6046 42 1 1.8449 -1.8837 3.6939 43 1 2.5531 -0.8527 6.8643 44 1 1.4796 -2.0057 5.9519 45 1 0.7780 0.8360 6.9967 46 1 -0.3270 -0.5965 6.8499 47 1 0.1549 1.7337 3.6089 48 1 0.8655 2.2102 5.1698 49 1 -1.1237 3.8819 4.7952 50 1 -4.9104 6.0171 6.0081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716644805.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:39 Heat of formation + Delta-G solvation = -47.154247 kcal Electronic energy + Delta-G solvation = -29618.068562 eV Core-core repulsion = 25454.947109 eV Total energy + Delta-G solvation = -4163.121453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68822 -39.83474 -38.44763 -37.97610 -36.77790 -34.64349 -34.04363 -31.94668 -31.78892 -30.86414 -28.32418 -27.41740 -26.02461 -24.47184 -23.65194 -22.81310 -22.74045 -21.17463 -20.49685 -19.72603 -19.48032 -18.44179 -17.62968 -17.44163 -16.34916 -16.13027 -16.08266 -15.75613 -15.30803 -15.10266 -15.00908 -14.81620 -14.47646 -14.17304 -13.91959 -13.82760 -13.37098 -13.19708 -12.95996 -12.76243 -12.57557 -12.48752 -12.32768 -12.00043 -11.94546 -11.80276 -11.76326 -11.51175 -11.33969 -11.26924 -10.93107 -10.83695 -10.68607 -10.65597 -10.59642 -10.05346 -10.04739 -9.65367 -9.56096 -9.13800 -8.88884 -8.50160 -8.26587 -6.38789 -3.90665 2.51175 2.64031 2.93816 2.98687 3.08067 3.33249 3.60309 3.63201 3.87822 4.02184 4.29462 4.40822 4.49362 4.53825 4.59804 4.63696 4.69323 4.70539 4.79903 4.91296 4.93892 5.08811 5.10988 5.23388 5.24780 5.27658 5.30694 5.32104 5.39913 5.45215 5.49407 5.51175 5.61716 5.71038 5.72070 5.76067 5.82563 5.84086 5.94065 6.01668 6.12861 6.30363 6.45079 6.81154 7.02611 7.38420 7.49003 8.05163 8.12617 8.50666 8.86673 9.33222 9.72612 10.74156 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009706 B = 0.002632 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.252769 B =10635.503062 C =12877.136717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.084 0.916 4 O -0.354 6.354 5 C 0.090 3.910 6 C -0.152 4.152 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.515 3.485 10 O -0.523 6.523 11 N -0.719 5.719 12 C 0.143 3.857 13 C 0.004 3.996 14 H 0.083 0.917 15 C -0.136 4.136 16 C 0.015 3.985 17 N -0.437 5.437 18 C 0.004 3.996 19 C 0.449 3.551 20 O -0.557 6.557 21 N -0.589 5.589 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.879 5.879 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.271 1.271 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.400 0.600 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.370 0.630 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.423 -5.529 -13.761 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.272 6.272 5 C 0.013 3.987 6 C -0.170 4.170 7 C -0.214 4.214 8 C -0.211 4.211 9 C 0.299 3.701 10 O -0.398 6.398 11 N -0.374 5.374 12 C 0.019 3.981 13 C -0.106 4.106 14 H 0.101 0.899 15 C -0.174 4.174 16 C -0.114 4.114 17 N -0.160 5.160 18 C -0.128 4.128 19 C 0.235 3.765 20 O -0.438 6.438 21 N -0.229 5.229 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.518 5.518 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.196 1.196 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.235 0.765 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.075 0.925 49 H 0.202 0.798 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.754 -7.269 -13.922 23.703 hybrid contribution 0.868 2.723 -0.086 2.860 sum 18.622 -4.545 -14.008 23.741 Atomic orbital electron populations 1.22253 0.92986 1.04245 1.03508 1.21882 0.95438 0.96031 0.85590 0.89820 1.88038 1.86481 1.33946 1.18708 1.22126 0.99323 0.91925 0.85283 1.22102 1.00402 1.01159 0.93308 1.23082 0.90859 1.03595 1.03876 1.22995 1.02482 1.01137 0.94511 1.20323 0.79853 0.85626 0.84254 1.90712 1.39627 1.23011 1.86493 1.45871 1.57998 1.28135 1.05351 1.21333 0.98664 0.96339 0.81787 1.23854 0.92088 0.99255 0.95439 0.89926 1.23206 0.98711 0.99706 0.95809 1.23566 0.98596 0.98938 0.90303 1.68916 1.13209 1.19113 1.14752 1.22599 0.97467 0.91196 1.01558 1.19507 0.88195 0.83328 0.85498 1.90587 1.57538 1.46836 1.48880 1.42215 1.16740 1.07224 1.56687 1.19418 0.90567 0.95807 1.37639 0.86255 1.25050 0.96200 0.97303 0.97586 1.69618 1.16698 1.20197 1.45336 0.86675 0.80196 0.82496 0.80007 1.19565 1.20131 1.19612 0.90482 0.91137 0.90826 0.92527 0.93097 0.86655 0.88690 0.88545 0.88342 0.88635 0.76505 0.91182 0.90601 0.90445 0.88529 0.91511 0.88590 0.89616 0.92502 0.79784 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.48 37.16 0.35 -1.35 16 2 C 0.07 0.77 3.13 -27.88 -0.09 0.68 16 3 H 0.08 0.68 7.79 -51.93 -0.40 0.27 16 4 O -0.35 -4.34 9.53 -55.09 -0.52 -4.86 16 5 C 0.09 0.81 6.03 37.16 0.22 1.03 16 6 C -0.15 -1.29 6.05 -90.63 -0.55 -1.84 16 7 C -0.18 -1.28 10.18 -26.70 -0.27 -1.56 16 8 C -0.17 -1.13 10.25 -26.70 -0.27 -1.40 16 9 C 0.51 6.79 7.18 -10.99 -0.08 6.72 16 10 O -0.52 -9.00 16.51 -14.31 -0.24 -9.24 16 11 N -0.72 -8.14 5.42 -60.30 -0.33 -8.46 16 12 C 0.14 1.58 5.82 -4.04 -0.02 1.55 16 13 C 0.00 0.04 3.25 -71.44 -0.23 -0.19 16 14 H 0.08 0.76 7.63 -51.92 -0.40 0.36 16 15 C -0.14 -1.38 8.00 -26.20 -0.21 -1.59 16 16 C 0.01 0.20 6.34 -7.55 -0.05 0.16 16 17 N -0.44 -6.26 5.74 -237.95 -1.37 -7.63 16 18 C 0.00 0.06 5.10 -4.97 -0.03 0.04 16 19 C 0.45 9.58 7.46 -10.98 -0.08 9.49 16 20 O -0.56 -14.28 14.98 5.55 0.08 -14.20 16 21 N -0.59 -13.27 5.09 -10.96 -0.06 -13.33 16 22 C -0.31 -8.34 10.16 -14.93 -0.15 -8.49 16 23 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 24 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 25 N -0.88 -25.04 13.96 55.50 0.77 -24.26 16 26 Si 0.88 18.56 27.74 -169.99 -4.71 13.84 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 28 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 29 H -0.27 -5.14 6.52 56.52 0.37 -4.77 16 30 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 31 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.43 7.87 -51.93 -0.41 0.03 16 34 H 0.05 0.40 7.82 -51.92 -0.41 0.00 16 35 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.40 4.01 6.11 -40.82 -0.25 3.76 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.97 7.94 -51.93 -0.41 0.56 16 45 H 0.07 0.91 7.84 -51.93 -0.41 0.51 16 46 H 0.10 1.55 7.97 -51.93 -0.41 1.14 16 47 H 0.09 1.07 6.56 -51.93 -0.34 0.73 16 48 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 49 H 0.37 7.22 5.76 -40.82 -0.24 6.99 16 50 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 408.86 15.07 6.16 6.16 Total: -1.00 -34.94 408.86 -9.99 -44.92 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -8.23 Total: 12.79 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.55 Total: 4.27 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.97 Total: -53.68 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.68 Total: -28.30 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.71 Total: 13.84 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.94 -9.99 -44.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716644805.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.232 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds