Wall clock time and date at job start Tue Mar 31 2020 22:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46632 * 2 1 4 4 O 1.42898 * 109.46972 * 240.00304 * 2 1 3 5 5 C 1.42905 * 114.00006 * 89.99732 * 4 2 1 6 6 C 1.52998 * 109.46848 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.49566 * 243.74558 * 6 5 4 8 8 C 1.53002 * 117.50017 * 175.08688 * 6 5 4 9 9 C 1.50698 * 109.47333 * 119.99812 * 2 1 3 10 10 O 1.21287 * 119.99374 * 115.00191 * 9 2 1 11 11 N 1.34772 * 120.00199 * 294.99974 * 9 2 1 12 12 C 1.46497 * 119.99945 * 180.02562 * 11 9 2 13 13 C 1.53001 * 109.47298 * 180.02562 * 12 11 9 14 14 H 1.09007 * 112.78705 * 75.80823 * 13 12 11 15 15 C 1.53506 * 113.47762 * 206.61781 * 13 12 11 16 16 C 1.53518 * 83.57441 * 140.79307 * 15 13 12 17 17 N 1.47475 * 113.47524 * 305.00169 * 13 12 11 18 18 C 1.46906 * 111.00135 * 106.52642 * 17 13 12 19 19 C 1.50703 * 109.47109 * 187.49657 * 18 17 13 20 20 O 1.21296 * 119.99996 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99978 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99848 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00405 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99358 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00464 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99431 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47204 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46979 * 120.00140 * 26 24 22 29 29 H 1.48498 * 109.47371 * 240.00040 * 26 24 22 30 30 H 1.09004 * 109.47142 * 299.99877 * 1 2 3 31 31 H 1.08998 * 109.47473 * 59.99842 * 1 2 3 32 32 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46879 * 299.99665 * 5 4 2 34 34 H 1.08993 * 109.47009 * 60.00223 * 5 4 2 35 35 H 1.09001 * 115.55653 * 29.41234 * 6 5 4 36 36 H 1.08993 * 117.50320 * 0.02562 * 7 6 5 37 37 H 1.09008 * 117.49601 * 145.02364 * 7 6 5 38 38 H 1.08999 * 117.50143 * 214.97505 * 8 6 5 39 39 H 1.09004 * 117.49652 * 359.97438 * 8 6 5 40 40 H 0.96998 * 120.00185 * 0.02562 * 11 9 2 41 41 H 1.09004 * 109.47312 * 59.99974 * 12 11 9 42 42 H 1.09003 * 109.47066 * 300.00400 * 12 11 9 43 43 H 1.08996 * 114.17352 * 27.14665 * 15 13 12 44 44 H 1.09000 * 114.34458 * 254.44937 * 15 13 12 45 45 H 1.09001 * 113.47541 * 219.21361 * 16 15 13 46 46 H 1.08993 * 113.53310 * 88.75610 * 16 15 13 47 47 H 1.08992 * 109.47459 * 307.49575 * 18 17 13 48 48 H 1.09004 * 109.47040 * 67.49726 * 18 17 13 49 49 H 0.97002 * 119.99767 * 359.97438 * 21 19 18 50 50 H 0.96997 * 119.99770 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1999 0.1831 -2.2941 6 6 2.7077 -0.6407 -3.4792 7 6 4.1057 -0.3225 -4.0133 8 6 2.8683 0.0767 -4.8211 9 6 2.0323 -0.7103 1.2305 10 8 2.6530 -1.7466 1.1214 11 7 1.7920 -0.1941 2.4520 12 6 2.2809 -0.8844 3.6481 13 6 1.8755 -0.0947 4.8942 14 1 0.8212 -0.2131 5.1447 15 6 2.8157 -0.3113 6.0882 16 6 2.5975 1.1918 6.3118 17 7 2.3189 1.3116 4.8685 18 6 1.1873 2.2160 4.6241 19 6 1.7000 3.6186 4.4216 20 8 2.8908 3.8427 4.4751 21 7 0.8352 4.6240 4.1811 22 6 1.3016 5.8999 3.9963 23 1 2.3619 6.0995 4.0439 24 6 0.4100 6.9363 3.7478 25 7 -0.8801 6.6934 3.6894 26 14 1.0455 8.6749 3.4968 27 1 2.5261 8.6819 3.6102 28 1 0.6504 9.1564 2.1487 29 1 0.4651 9.5683 4.5313 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.2536 0.6547 -2.5588 34 1 2.9318 0.9514 -2.0451 35 1 2.3857 -1.6818 -3.5006 36 1 4.6639 0.4732 -3.5201 37 1 4.7033 -1.1544 -4.3864 38 1 2.6523 -0.4926 -5.7252 39 1 2.6118 1.1354 -4.8596 40 1 1.2953 0.6344 2.5392 41 1 3.3672 -0.9622 3.6042 42 1 1.8467 -1.8832 3.6941 43 1 3.8355 -0.5777 5.8106 44 1 2.4046 -0.9438 6.8749 45 1 3.4983 1.7194 6.6254 46 1 1.7364 1.4177 6.9406 47 1 0.6502 1.8933 3.7324 48 1 0.5141 2.1954 5.4812 49 1 -0.1171 4.4447 4.1379 50 1 -1.5025 7.4170 3.5163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716644807.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:47 Heat of formation + Delta-G solvation = -78.655428 kcal Electronic energy + Delta-G solvation = -29777.166635 eV Core-core repulsion = 25612.679189 eV Total energy + Delta-G solvation = -4164.487446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67693 -40.81325 -39.60987 -39.16821 -37.49021 -35.95029 -35.64388 -33.31938 -32.76730 -31.94496 -29.27130 -28.11912 -27.53815 -25.38669 -25.33516 -23.73295 -23.28599 -21.87450 -21.44002 -21.07267 -20.63034 -19.90510 -18.50477 -18.28327 -17.68950 -17.18828 -17.00755 -16.82396 -16.46752 -16.33512 -16.11878 -15.86273 -15.55192 -15.50697 -15.07767 -14.96653 -14.56859 -14.27369 -14.06483 -13.90914 -13.63886 -13.53369 -13.30125 -13.05872 -12.92537 -12.67091 -12.60718 -12.42807 -12.40986 -12.33990 -12.13994 -12.05898 -11.95070 -11.61352 -11.48955 -11.44407 -11.32751 -10.90976 -10.43407 -10.36021 -10.12741 -9.99268 -9.71293 -8.46214 -5.93984 1.35866 1.42082 1.50765 1.55040 1.76853 2.06789 2.28402 2.61740 2.81317 2.97255 3.19963 3.34436 3.54669 3.61096 3.80271 3.81447 3.86734 3.93112 4.01119 4.04707 4.11267 4.16369 4.27728 4.29181 4.34773 4.40863 4.43731 4.51092 4.61815 4.64897 4.65897 4.74730 4.75558 4.84517 4.88214 4.98049 5.01306 5.13312 5.18600 5.21406 5.21861 5.29691 5.42226 5.47117 5.93711 6.02554 6.12169 6.44292 6.62416 7.13357 7.15186 7.58495 8.15610 8.71080 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007271 B = 0.003143 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3850.025972 B = 8906.988790 C =11853.075965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.067 3.933 3 H 0.094 0.906 4 O -0.380 6.380 5 C 0.085 3.915 6 C -0.169 4.169 7 C -0.186 4.186 8 C -0.155 4.155 9 C 0.512 3.488 10 O -0.570 6.570 11 N -0.710 5.710 12 C 0.141 3.859 13 C 0.017 3.983 14 H 0.113 0.887 15 C -0.115 4.115 16 C -0.003 4.003 17 N -0.470 5.470 18 C 0.020 3.980 19 C 0.442 3.558 20 O -0.619 6.619 21 N -0.574 5.574 22 C -0.330 4.330 23 H 0.074 0.926 24 C -0.009 4.009 25 N -0.917 5.917 26 Si 0.986 3.014 27 H -0.277 1.277 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.406 0.594 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -15.093 -6.275 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.006 3.994 3 H 0.112 0.888 4 O -0.298 6.298 5 C 0.009 3.991 6 C -0.187 4.187 7 C -0.223 4.223 8 C -0.192 4.192 9 C 0.298 3.702 10 O -0.449 6.449 11 N -0.364 5.364 12 C 0.017 3.983 13 C -0.093 4.093 14 H 0.130 0.870 15 C -0.153 4.153 16 C -0.132 4.132 17 N -0.193 5.193 18 C -0.111 4.111 19 C 0.229 3.771 20 O -0.505 6.505 21 N -0.212 5.212 22 C -0.460 4.460 23 H 0.092 0.908 24 C -0.209 4.209 25 N -0.559 5.559 26 Si 0.811 3.189 27 H -0.201 1.201 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.242 0.758 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.124 0.876 48 H 0.105 0.895 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.378 -15.501 -6.837 16.946 hybrid contribution -0.948 1.553 0.424 1.868 sum -1.326 -13.947 -6.412 15.408 Atomic orbital electron populations 1.22208 0.91239 1.03809 1.04808 1.21999 0.96775 0.96175 0.84448 0.88788 1.87979 1.86875 1.35357 1.19621 1.22295 1.00261 0.91863 0.84670 1.22105 1.01510 1.00836 0.94277 1.23169 0.90920 1.03899 1.04277 1.23088 1.00738 1.01623 0.93742 1.20782 0.79085 0.85025 0.85300 1.90671 1.41681 1.25353 1.87147 1.45863 1.57368 1.27859 1.05264 1.21403 0.99223 0.95599 0.82080 1.23839 1.00996 0.89315 0.95126 0.86983 1.23101 1.00220 0.95095 0.96845 1.23822 1.02128 0.97646 0.89564 1.68826 1.29667 1.02106 1.18741 1.22461 0.94030 0.90951 1.03705 1.20765 0.86479 0.87507 0.82300 1.90516 1.17978 1.85004 1.56972 1.41925 1.09162 1.06768 1.63320 1.19616 0.93922 0.84885 1.47550 0.90780 1.25919 0.95153 1.03267 0.96551 1.69654 1.01863 1.34907 1.49435 0.84965 0.78076 0.77547 0.78344 1.20135 1.19557 1.19692 0.89493 0.89660 0.91485 0.90961 0.93152 0.87596 0.88928 0.88002 0.86919 0.87741 0.75786 0.92660 0.89744 0.89108 0.86974 0.91864 0.89822 0.87645 0.89472 0.76915 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.48 71.98 0.68 -2.33 16 2 C 0.07 1.66 3.13 29.85 0.09 1.75 16 3 H 0.09 2.18 7.79 -2.38 -0.02 2.16 16 4 O -0.38 -10.57 9.53 -129.99 -1.24 -11.81 16 5 C 0.09 1.84 6.03 71.98 0.43 2.27 16 6 C -0.17 -3.32 6.05 -10.79 -0.07 -3.39 16 7 C -0.19 -3.27 10.18 30.62 0.31 -2.96 16 8 C -0.16 -2.25 10.25 30.62 0.31 -1.93 16 9 C 0.51 15.09 7.18 87.66 0.63 15.72 16 10 O -0.57 -21.41 16.51 15.94 0.26 -21.14 16 11 N -0.71 -17.66 5.42 -463.06 -2.51 -20.18 16 12 C 0.14 3.20 5.81 86.38 0.50 3.70 16 13 C 0.02 0.33 3.25 42.18 0.14 0.46 16 14 H 0.11 1.63 7.91 -2.38 -0.02 1.61 16 15 C -0.11 -2.02 8.00 30.94 0.25 -1.77 16 16 C 0.00 -0.07 7.69 83.57 0.64 0.57 16 17 N -0.47 -13.53 5.39 -906.76 -4.89 -18.42 16 18 C 0.02 0.61 5.04 85.56 0.43 1.04 16 19 C 0.44 19.94 7.83 87.66 0.69 20.62 16 20 O -0.62 -33.87 16.01 -3.08 -0.05 -33.92 16 21 N -0.57 -27.86 5.29 -306.98 -1.62 -29.48 16 22 C -0.33 -18.18 9.68 84.04 0.81 -17.36 16 23 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 24 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 25 N -0.92 -47.47 13.05 21.66 0.28 -47.18 16 26 Si 0.99 41.91 29.55 68.60 2.03 43.94 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 28 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 29 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 30 H 0.09 1.35 7.92 -2.38 -0.02 1.33 16 31 H 0.08 1.34 7.87 -2.39 -0.02 1.32 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.28 7.87 -2.39 -0.02 1.26 16 34 H 0.05 1.09 7.82 -2.39 -0.02 1.07 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 1.67 8.03 -2.39 -0.02 1.66 16 37 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.41 9.26 5.98 -92.71 -0.55 8.70 16 41 H 0.05 1.49 7.88 -2.38 -0.02 1.47 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 1.72 7.94 -2.39 -0.02 1.70 16 44 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 1.80 7.44 -2.39 -0.02 1.78 16 47 H 0.11 2.61 6.25 -2.39 -0.01 2.59 16 48 H 0.09 2.21 7.35 -2.38 -0.02 2.19 16 49 H 0.40 17.98 7.90 -92.71 -0.73 17.25 16 50 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -76.30 413.72 -1.74 -78.04 By element: Atomic # 1 Polarization: 44.06 SS G_CDS: -0.33 Total: 43.73 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.33 Total: 16.42 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -8.74 Total: -115.26 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -1.02 Total: -66.87 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -76.30 -1.74 -78.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716644807.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.616 kcal (2) G-P(sol) polarization free energy of solvation -76.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds