Wall clock time and date at job start Tue Mar 31 2020 22:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47391 * 2 1 4 4 O 1.42901 * 109.47262 * 119.99834 * 2 1 3 5 5 C 1.42895 * 114.00313 * 270.00399 * 4 2 1 6 6 C 1.53003 * 109.47298 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.51964 * 116.28202 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 C 1.50697 * 109.47298 * 239.99898 * 2 1 3 10 10 O 1.21279 * 120.00188 * 244.99603 * 9 2 1 11 11 N 1.34776 * 119.99891 * 65.00005 * 9 2 1 12 12 C 1.46495 * 120.00295 * 179.97438 * 11 9 2 13 13 C 1.53002 * 109.47489 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.74425 * 284.23310 * 13 12 11 15 15 C 1.53504 * 113.47794 * 153.38451 * 13 12 11 16 16 C 1.53514 * 83.57768 * 219.21087 * 15 13 12 17 17 N 1.47480 * 113.47522 * 54.99857 * 13 12 11 18 18 C 1.46895 * 111.00372 * 253.47418 * 17 13 12 19 19 C 1.50703 * 109.47028 * 170.00216 * 18 17 13 20 20 O 1.21283 * 119.99983 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99768 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00106 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99810 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00236 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00092 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99976 * 359.97438 * 24 22 21 27 27 H 1.48495 * 109.47044 * 90.00115 * 26 24 22 28 28 H 1.48504 * 109.46882 * 210.00003 * 26 24 22 29 29 H 1.48498 * 109.47246 * 330.00196 * 26 24 22 30 30 H 1.09000 * 109.47340 * 299.99514 * 1 2 3 31 31 H 1.09001 * 109.47741 * 60.00184 * 1 2 3 32 32 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47440 * 59.99511 * 5 4 2 34 34 H 1.09005 * 109.46905 * 299.99670 * 5 4 2 35 35 H 1.09002 * 115.54973 * 330.57985 * 6 5 4 36 36 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 37 37 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 38 38 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 39 39 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 40 40 H 0.97003 * 119.99868 * 0.02562 * 11 9 2 41 41 H 1.08998 * 109.47717 * 300.00369 * 12 11 9 42 42 H 1.09007 * 109.46725 * 60.00185 * 12 11 9 43 43 H 1.09004 * 114.16989 * 332.85275 * 15 13 12 44 44 H 1.09004 * 114.17797 * 105.56326 * 15 13 12 45 45 H 1.08996 * 113.47301 * 271.26009 * 16 15 13 46 46 H 1.09000 * 113.53364 * 140.79412 * 16 15 13 47 47 H 1.08999 * 109.47064 * 289.99811 * 18 17 13 48 48 H 1.08995 * 109.47236 * 49.99778 * 18 17 13 49 49 H 0.97001 * 119.99893 * 359.97438 * 21 19 18 50 50 H 0.97005 * 120.00392 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7090 -0.6406 3.4788 7 6 4.1068 -0.3215 4.0130 8 6 2.8699 0.0767 4.8207 9 6 2.0323 -0.7104 -1.2304 10 8 2.6530 -1.7466 -1.1214 11 7 1.7919 -0.1942 -2.4519 12 6 2.2807 -0.8844 -3.6481 13 6 1.8753 -0.0946 -4.8942 14 1 0.8208 -0.2129 -5.1436 15 6 2.8154 -0.3112 -6.0882 16 6 2.5973 1.1918 -6.3118 17 7 2.3187 1.3117 -4.8685 18 6 1.1872 2.2161 -4.6241 19 6 1.7038 3.6071 -4.3608 20 8 2.8971 3.8236 -4.3749 21 7 0.8398 4.6103 -4.1086 22 6 1.3097 5.8756 -3.8685 23 1 2.3723 6.0684 -3.8811 24 6 0.4190 6.9100 -3.6091 25 7 0.8694 8.1229 -3.3795 26 14 -1.4189 6.5766 -3.5881 27 1 -1.8385 6.2030 -2.2135 28 1 -2.1484 7.7982 -4.0135 29 1 -1.7309 5.4638 -4.5205 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2537 0.6547 2.5589 34 1 2.9319 0.9513 2.0450 35 1 2.3877 -1.6820 3.5002 36 1 4.7051 -1.1530 4.3857 37 1 4.6642 0.4749 3.5201 38 1 2.6134 1.1355 4.8593 39 1 2.6544 -0.4928 5.7248 40 1 1.2958 0.6348 -2.5391 41 1 3.3670 -0.9623 -3.6043 42 1 1.8464 -1.8832 -3.6941 43 1 3.8352 -0.5777 -5.8107 44 1 2.4014 -0.9440 -6.8734 45 1 1.7358 1.4167 -6.9405 46 1 3.4975 1.7202 -6.6256 47 1 0.5372 2.2295 -5.4989 48 1 0.6240 1.8677 -3.7584 49 1 -0.1145 4.4370 -4.0970 50 1 0.2476 8.8452 -3.1987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716644808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:53 Heat of formation + Delta-G solvation = -45.891553 kcal Electronic energy + Delta-G solvation = -29881.267950 eV Core-core repulsion = 25718.201252 eV Total energy + Delta-G solvation = -4163.066698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.67136 -39.75768 -38.33683 -37.99593 -36.67384 -34.58677 -34.01414 -31.91919 -31.75299 -30.88691 -28.33769 -27.31665 -26.03728 -24.46180 -23.65803 -22.82059 -22.62232 -21.05747 -20.44394 -19.75831 -19.46094 -18.44239 -17.52355 -17.34614 -16.31567 -16.07418 -15.95217 -15.80485 -15.22104 -15.15339 -14.96439 -14.79911 -14.50230 -14.16198 -13.95048 -13.59139 -13.37183 -13.19519 -12.99323 -12.70827 -12.63101 -12.57089 -12.27877 -12.03628 -11.83730 -11.72594 -11.67848 -11.49322 -11.25401 -11.22841 -11.01822 -10.72156 -10.67709 -10.63489 -10.54451 -10.03481 -9.95036 -9.62900 -9.47755 -9.08938 -8.97273 -8.41120 -8.24087 -6.36541 -3.88398 2.60484 2.70313 2.95223 2.99441 3.09099 3.42998 3.64298 3.68715 3.85819 4.03854 4.29792 4.50938 4.58224 4.59916 4.63516 4.71351 4.75211 4.77202 4.87781 4.92589 5.05502 5.08813 5.18070 5.19390 5.24471 5.28800 5.35388 5.37388 5.40220 5.41545 5.49526 5.54619 5.64130 5.65182 5.77995 5.80570 5.84748 5.85973 5.90233 5.94918 6.06877 6.26294 6.44248 6.90786 6.99170 7.45052 7.51807 8.08056 8.19767 8.54153 8.89782 9.36073 9.77252 10.76601 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007488 B = 0.003282 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.507588 B = 8529.761276 C =11174.646536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 H 0.090 0.910 4 O -0.354 6.354 5 C 0.089 3.911 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.517 3.483 10 O -0.525 6.525 11 N -0.719 5.719 12 C 0.143 3.857 13 C 0.004 3.996 14 H 0.083 0.917 15 C -0.132 4.132 16 C 0.004 3.996 17 N -0.433 5.433 18 C 0.004 3.996 19 C 0.453 3.547 20 O -0.552 6.552 21 N -0.593 5.593 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.400 0.600 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.369 0.631 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 -18.378 5.280 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.007 3.993 3 H 0.108 0.892 4 O -0.272 6.272 5 C 0.012 3.988 6 C -0.169 4.169 7 C -0.214 4.214 8 C -0.211 4.211 9 C 0.302 3.698 10 O -0.400 6.400 11 N -0.374 5.374 12 C 0.019 3.981 13 C -0.106 4.106 14 H 0.101 0.899 15 C -0.171 4.171 16 C -0.125 4.125 17 N -0.156 5.156 18 C -0.129 4.129 19 C 0.238 3.762 20 O -0.433 6.433 21 N -0.233 5.233 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.705 3.295 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.236 0.764 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.201 0.799 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.337 -18.696 5.901 19.744 hybrid contribution -2.667 0.658 -0.506 2.793 sum -5.004 -18.038 5.395 19.481 Atomic orbital electron populations 1.22226 0.93523 1.03621 1.03360 1.21884 0.95084 0.96682 0.85617 0.89222 1.88006 1.86511 1.33980 1.18724 1.22150 0.99482 0.92010 0.85150 1.22084 1.00582 1.00956 0.93316 1.23081 0.90850 1.03648 1.03784 1.22987 1.02594 1.01189 0.94367 1.20301 0.79810 0.85482 0.84225 1.90701 1.39473 1.23330 1.86463 1.45851 1.58203 1.27922 1.05387 1.21318 1.00305 0.94633 0.81883 1.23798 0.99218 0.92046 0.95571 0.89911 1.23157 1.00483 0.96826 0.96598 1.23775 1.02680 0.95845 0.90174 1.68874 1.29078 1.00267 1.17343 1.22618 0.93672 0.95113 1.01483 1.19505 0.87248 0.85087 0.84332 1.90585 1.15319 1.83146 1.54222 1.42225 1.07129 1.09122 1.64844 1.19415 0.96706 0.82068 1.45167 0.86302 1.25032 0.98423 0.95072 0.97598 1.69619 1.35212 1.00185 1.47046 0.86691 0.85439 0.78569 0.78766 1.19611 1.20156 1.19598 0.91022 0.90968 0.91114 0.92582 0.92749 0.86800 0.88590 0.88512 0.88567 0.88430 0.76433 0.90628 0.91166 0.88416 0.90330 0.91334 0.88989 0.91836 0.90164 0.79861 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.48 37.15 0.35 -1.25 16 2 C 0.07 0.84 3.13 -27.89 -0.09 0.75 16 3 H 0.09 1.02 7.79 -51.93 -0.40 0.62 16 4 O -0.35 -4.81 9.53 -55.09 -0.52 -5.33 16 5 C 0.09 0.96 6.03 37.16 0.22 1.18 16 6 C -0.15 -1.49 6.06 -90.61 -0.55 -2.04 16 7 C -0.18 -1.58 10.18 -26.73 -0.27 -1.86 16 8 C -0.17 -1.38 10.25 -26.73 -0.27 -1.65 16 9 C 0.52 7.44 7.18 -10.99 -0.08 7.37 16 10 O -0.52 -9.50 16.51 -14.30 -0.24 -9.73 16 11 N -0.72 -8.96 5.42 -60.30 -0.33 -9.29 16 12 C 0.14 1.65 5.81 -4.04 -0.02 1.62 16 13 C 0.00 0.04 3.23 -71.44 -0.23 -0.19 16 14 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 15 C -0.13 -1.25 8.00 -26.20 -0.21 -1.46 16 16 C 0.00 0.05 7.71 -7.54 -0.06 -0.01 16 17 N -0.43 -6.21 5.39 -237.95 -1.28 -7.49 16 18 C 0.00 0.05 5.05 -4.98 -0.03 0.03 16 19 C 0.45 9.76 7.85 -10.98 -0.09 9.68 16 20 O -0.55 -14.51 16.01 5.55 0.09 -14.43 16 21 N -0.59 -13.41 5.09 -10.97 -0.06 -13.47 16 22 C -0.30 -8.36 10.16 -14.94 -0.15 -8.51 16 23 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.17 13.96 55.50 0.77 -24.40 16 26 Si 0.88 18.58 27.74 -169.99 -4.71 13.87 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 28 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 29 H -0.27 -5.15 6.52 56.52 0.37 -4.79 16 30 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 31 H 0.07 0.59 7.93 -51.93 -0.41 0.18 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 34 H 0.05 0.58 7.82 -51.93 -0.41 0.17 16 35 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.87 8.03 -51.93 -0.42 0.46 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.40 4.64 6.00 -40.82 -0.25 4.39 16 41 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 42 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.10 0.95 7.94 -51.93 -0.41 0.53 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.75 7.42 -51.93 -0.39 0.37 16 46 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.06 0.81 7.30 -51.93 -0.38 0.44 16 48 H 0.08 0.98 6.27 -51.93 -0.33 0.66 16 49 H 0.37 7.22 5.76 -40.82 -0.24 6.98 16 50 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -35.57 410.60 -9.85 -45.42 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -8.20 Total: 13.99 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.57 Total: 4.67 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.89 Total: -54.64 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.67 Total: -29.49 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.71 Total: 13.87 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.57 -9.85 -45.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716644808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.475 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds