Wall clock time and date at job start Tue Mar 31 2020 22:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47391 * 2 1 4 4 O 1.42901 * 109.47262 * 119.99834 * 2 1 3 5 5 C 1.42895 * 114.00313 * 270.00399 * 4 2 1 6 6 C 1.53003 * 109.47298 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.51964 * 116.28202 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 C 1.50697 * 109.47298 * 239.99898 * 2 1 3 10 10 O 1.21279 * 120.00188 * 244.99603 * 9 2 1 11 11 N 1.34776 * 119.99891 * 65.00005 * 9 2 1 12 12 C 1.46495 * 120.00295 * 179.97438 * 11 9 2 13 13 C 1.53002 * 109.47489 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.74425 * 284.23310 * 13 12 11 15 15 C 1.53504 * 113.47794 * 153.38451 * 13 12 11 16 16 C 1.53514 * 83.57768 * 219.21087 * 15 13 12 17 17 N 1.47480 * 113.47522 * 54.99857 * 13 12 11 18 18 C 1.46895 * 111.00372 * 253.47418 * 17 13 12 19 19 C 1.50703 * 109.47028 * 170.00216 * 18 17 13 20 20 O 1.21283 * 119.99983 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99768 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00106 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99810 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00236 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00092 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99976 * 359.97438 * 24 22 21 27 27 H 1.48495 * 109.47044 * 90.00115 * 26 24 22 28 28 H 1.48504 * 109.46882 * 210.00003 * 26 24 22 29 29 H 1.48498 * 109.47246 * 330.00196 * 26 24 22 30 30 H 1.09000 * 109.47340 * 299.99514 * 1 2 3 31 31 H 1.09001 * 109.47741 * 60.00184 * 1 2 3 32 32 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47440 * 59.99511 * 5 4 2 34 34 H 1.09005 * 109.46905 * 299.99670 * 5 4 2 35 35 H 1.09002 * 115.54973 * 330.57985 * 6 5 4 36 36 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 37 37 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 38 38 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 39 39 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 40 40 H 0.97003 * 119.99868 * 0.02562 * 11 9 2 41 41 H 1.08998 * 109.47717 * 300.00369 * 12 11 9 42 42 H 1.09007 * 109.46725 * 60.00185 * 12 11 9 43 43 H 1.09004 * 114.16989 * 332.85275 * 15 13 12 44 44 H 1.09004 * 114.17797 * 105.56326 * 15 13 12 45 45 H 1.08996 * 113.47301 * 271.26009 * 16 15 13 46 46 H 1.09000 * 113.53364 * 140.79412 * 16 15 13 47 47 H 1.08999 * 109.47064 * 289.99811 * 18 17 13 48 48 H 1.08995 * 109.47236 * 49.99778 * 18 17 13 49 49 H 0.97001 * 119.99893 * 359.97438 * 21 19 18 50 50 H 0.97005 * 120.00392 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7090 -0.6406 3.4788 7 6 4.1068 -0.3215 4.0130 8 6 2.8699 0.0767 4.8207 9 6 2.0323 -0.7104 -1.2304 10 8 2.6530 -1.7466 -1.1214 11 7 1.7919 -0.1942 -2.4519 12 6 2.2807 -0.8844 -3.6481 13 6 1.8753 -0.0946 -4.8942 14 1 0.8208 -0.2129 -5.1436 15 6 2.8154 -0.3112 -6.0882 16 6 2.5973 1.1918 -6.3118 17 7 2.3187 1.3117 -4.8685 18 6 1.1872 2.2161 -4.6241 19 6 1.7038 3.6071 -4.3608 20 8 2.8971 3.8236 -4.3749 21 7 0.8398 4.6103 -4.1086 22 6 1.3097 5.8756 -3.8685 23 1 2.3723 6.0684 -3.8811 24 6 0.4190 6.9100 -3.6091 25 7 0.8694 8.1229 -3.3795 26 14 -1.4189 6.5766 -3.5881 27 1 -1.8385 6.2030 -2.2135 28 1 -2.1484 7.7982 -4.0135 29 1 -1.7309 5.4638 -4.5205 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2537 0.6547 2.5589 34 1 2.9319 0.9513 2.0450 35 1 2.3877 -1.6820 3.5002 36 1 4.7051 -1.1530 4.3857 37 1 4.6642 0.4749 3.5201 38 1 2.6134 1.1355 4.8593 39 1 2.6544 -0.4928 5.7248 40 1 1.2958 0.6348 -2.5391 41 1 3.3670 -0.9623 -3.6043 42 1 1.8464 -1.8832 -3.6941 43 1 3.8352 -0.5777 -5.8107 44 1 2.4014 -0.9440 -6.8734 45 1 1.7358 1.4167 -6.9405 46 1 3.4975 1.7202 -6.6256 47 1 0.5372 2.2295 -5.4989 48 1 0.6240 1.8677 -3.7584 49 1 -0.1145 4.4370 -4.0970 50 1 0.2476 8.8452 -3.1987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716644808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:52 Heat of formation + Delta-G solvation = -73.966284 kcal Electronic energy + Delta-G solvation = -29882.485362 eV Core-core repulsion = 25718.201252 eV Total energy + Delta-G solvation = -4164.284110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69486 -40.82722 -39.74282 -39.17759 -37.49555 -35.98706 -35.65199 -33.75975 -32.78816 -32.04202 -29.27812 -28.12194 -27.62414 -25.36245 -25.17744 -23.73183 -23.28719 -21.87868 -21.45253 -21.25795 -20.62463 -20.27530 -18.50155 -18.28117 -17.68280 -17.21623 -17.01957 -16.84091 -16.61841 -16.36041 -16.13064 -15.85427 -15.53994 -15.23300 -15.09395 -14.92136 -14.59576 -14.38217 -14.24877 -14.03730 -13.91219 -13.64302 -13.29092 -13.07544 -12.93873 -12.67029 -12.61515 -12.41317 -12.40388 -12.34376 -12.05973 -12.01424 -11.93488 -11.60872 -11.48241 -11.44969 -11.32880 -10.91098 -10.46604 -10.41278 -10.22995 -10.12580 -9.71577 -8.39528 -6.00850 1.30862 1.37063 1.46148 1.51099 1.76972 1.98135 2.24616 2.56670 2.70979 2.95766 3.15125 3.24258 3.52056 3.60613 3.78969 3.81385 3.86887 3.92917 4.00609 4.03437 4.11230 4.12206 4.24710 4.28886 4.33052 4.39297 4.40394 4.43468 4.61377 4.63793 4.66570 4.74414 4.76263 4.84951 4.88805 4.97684 5.02129 5.14226 5.18257 5.21389 5.21723 5.29875 5.46784 5.55311 5.93986 6.02588 6.08202 6.44963 6.61670 6.90928 7.14154 7.42075 8.00990 8.78349 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007488 B = 0.003282 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.507588 B = 8529.761276 C =11174.646536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.065 3.935 3 H 0.094 0.906 4 O -0.380 6.380 5 C 0.085 3.915 6 C -0.168 4.168 7 C -0.187 4.187 8 C -0.155 4.155 9 C 0.512 3.488 10 O -0.570 6.570 11 N -0.710 5.710 12 C 0.140 3.860 13 C 0.019 3.981 14 H 0.119 0.881 15 C -0.116 4.116 16 C -0.004 4.004 17 N -0.476 5.476 18 C 0.016 3.984 19 C 0.452 3.548 20 O -0.610 6.610 21 N -0.592 5.592 22 C -0.327 4.327 23 H 0.051 0.949 24 C -0.016 4.016 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.254 1.254 28 H -0.279 1.279 29 H -0.228 1.228 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.406 0.594 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.060 0.940 47 H 0.099 0.901 48 H 0.115 0.885 49 H 0.390 0.610 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 -20.370 4.917 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.004 3.996 3 H 0.112 0.888 4 O -0.299 6.299 5 C 0.009 3.991 6 C -0.186 4.186 7 C -0.224 4.224 8 C -0.192 4.192 9 C 0.298 3.702 10 O -0.449 6.449 11 N -0.363 5.363 12 C 0.016 3.984 13 C -0.090 4.090 14 H 0.136 0.864 15 C -0.154 4.154 16 C -0.132 4.132 17 N -0.199 5.199 18 C -0.116 4.116 19 C 0.240 3.760 20 O -0.493 6.493 21 N -0.234 5.234 22 C -0.456 4.456 23 H 0.069 0.931 24 C -0.215 4.215 25 N -0.578 5.578 26 Si 0.785 3.215 27 H -0.178 1.178 28 H -0.205 1.205 29 H -0.151 1.151 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.243 0.757 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.117 0.883 48 H 0.133 0.867 49 H 0.226 0.774 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.457 -20.702 5.512 22.376 hybrid contribution -1.180 1.302 -0.412 1.805 sum -7.637 -19.400 5.101 21.464 Atomic orbital electron populations 1.22215 0.91010 1.03874 1.04943 1.22031 0.96969 0.96158 0.84425 0.88841 1.87977 1.86908 1.35354 1.19644 1.22288 1.00257 0.91829 0.84683 1.22105 1.01418 1.00843 0.94271 1.23155 0.90979 1.03888 1.04351 1.23077 1.00710 1.01615 0.93777 1.20790 0.79076 0.85015 0.85340 1.90673 1.41646 1.25439 1.87149 1.45835 1.57436 1.27831 1.05205 1.21412 0.99131 0.95699 0.82175 1.23853 1.01209 0.89032 0.94931 0.86377 1.23101 1.00158 0.95207 0.96972 1.23869 1.02301 0.97590 0.89485 1.68811 1.29897 1.02304 1.18876 1.22571 0.94244 0.90361 1.04432 1.20877 0.86402 0.87351 0.81366 1.90566 1.18222 1.84638 1.55893 1.42026 1.08364 1.07613 1.65408 1.18959 0.94201 0.85098 1.47362 0.93101 1.26138 1.05339 0.93982 0.95997 1.69817 1.37979 1.01799 1.48202 0.85370 0.76002 0.79668 0.80492 1.17790 1.20475 1.15098 0.89677 0.89117 0.91494 0.90848 0.93309 0.87534 0.88007 0.89038 0.87781 0.86889 0.75720 0.92972 0.89677 0.89432 0.86870 0.89204 0.92104 0.88302 0.86727 0.77449 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.48 71.98 0.68 -2.00 16 2 C 0.07 1.54 3.13 29.84 0.09 1.63 16 3 H 0.09 2.08 7.79 -2.39 -0.02 2.06 16 4 O -0.38 -10.32 9.53 -129.99 -1.24 -11.56 16 5 C 0.09 1.81 6.03 71.98 0.43 2.25 16 6 C -0.17 -3.27 6.06 -10.79 -0.07 -3.33 16 7 C -0.19 -3.31 10.18 30.59 0.31 -3.00 16 8 C -0.15 -2.24 10.25 30.60 0.31 -1.93 16 9 C 0.51 14.45 7.18 87.66 0.63 15.08 16 10 O -0.57 -20.94 16.51 15.96 0.26 -20.68 16 11 N -0.71 -16.36 5.42 -463.07 -2.51 -18.88 16 12 C 0.14 2.95 5.81 86.38 0.50 3.45 16 13 C 0.02 0.33 3.23 42.19 0.14 0.46 16 14 H 0.12 1.31 7.91 -2.39 -0.02 1.29 16 15 C -0.12 -1.85 8.00 30.94 0.25 -1.60 16 16 C 0.00 -0.09 7.71 83.57 0.64 0.56 16 17 N -0.48 -12.60 5.39 -906.72 -4.88 -17.49 16 18 C 0.02 0.41 5.05 85.56 0.43 0.84 16 19 C 0.45 19.24 7.85 87.66 0.69 19.92 16 20 O -0.61 -33.37 16.01 -3.04 -0.05 -33.41 16 21 N -0.59 -26.20 5.09 -307.00 -1.56 -27.76 16 22 C -0.33 -18.58 10.16 84.04 0.85 -17.73 16 23 H 0.05 3.51 7.39 -2.91 -0.02 3.49 16 24 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 25 N -0.94 -55.53 13.96 21.66 0.30 -55.23 16 26 Si 0.96 36.65 27.74 68.60 1.90 38.55 16 27 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 28 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 29 H -0.23 -7.03 6.52 99.48 0.65 -6.38 16 30 H 0.08 1.18 7.87 -2.39 -0.02 1.16 16 31 H 0.09 1.14 7.93 -2.39 -0.02 1.12 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.26 7.87 -2.39 -0.02 1.24 16 34 H 0.05 1.06 7.82 -2.38 -0.02 1.04 16 35 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.69 8.03 -2.39 -0.02 1.67 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.41 8.22 6.00 -92.71 -0.56 7.66 16 41 H 0.05 1.36 7.88 -2.39 -0.02 1.34 16 42 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.09 1.58 7.94 -2.38 -0.02 1.56 16 44 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.09 1.63 7.42 -2.39 -0.02 1.62 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.10 1.97 7.30 -2.39 -0.02 1.95 16 48 H 0.11 2.22 6.27 -2.39 -0.01 2.21 16 49 H 0.39 13.82 5.76 -92.71 -0.53 13.28 16 50 H 0.28 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -86.51 410.60 -1.60 -88.11 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -0.20 Total: 44.15 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.37 Total: 14.20 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -8.66 Total: -119.35 kcal Atomic # 8 Polarization: -64.63 SS G_CDS: -1.02 Total: -65.65 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 1.90 Total: 38.55 kcal Total: -86.51 -1.60 -88.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716644808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.143 kcal (2) G-P(sol) polarization free energy of solvation -86.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds