Wall clock time and date at job start Tue Mar 31 2020 22:33:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42896 * 114.00093 * 2 1
4 4 H 1.09004 * 109.47136 * 329.99706 * 3 2 1
5 5 C 1.52993 * 109.47405 * 89.99969 * 3 2 1
6 6 C 1.50699 * 109.47082 * 210.00322 * 3 2 1
7 7 O 1.21284 * 119.99960 * 339.94984 * 6 3 2
8 8 N 1.34876 * 120.00075 * 159.95716 * 6 3 2
9 9 C 1.44806 * 120.22738 * 4.65428 * 8 6 3
10 10 C 1.51402 * 113.24968 * 269.16760 * 9 8 6
11 11 C 1.51276 * 114.19218 * 297.39344 * 10 9 8
12 12 H 1.09695 * 110.70644 * 177.31195 * 11 10 9
13 13 C 1.54117 * 108.46826 * 299.33563 * 11 10 9
14 14 C 1.53964 * 104.87466 * 92.41403 * 13 11 10
15 15 C 1.52081 * 105.66413 * 12.34174 * 14 13 11
16 16 H 1.09192 * 108.61914 * 122.47835 * 15 14 13
17 17 C 1.49398 * 120.07409 * 184.37927 * 8 6 3
18 18 N 1.48133 * 109.52208 * 4.06697 * 15 14 13
19 19 C 1.46870 * 111.16817 * 101.48961 * 18 15 14
20 20 C 1.50699 * 109.47389 * 72.36294 * 19 18 15
21 21 O 1.21291 * 119.99663 * 0.02562 * 20 19 18
22 22 N 1.34776 * 120.00093 * 179.97438 * 20 19 18
23 23 C 1.37099 * 120.00064 * 180.02562 * 22 20 19
24 24 H 1.07998 * 119.99485 * 359.97438 * 23 22 20
25 25 C 1.38946 * 119.99939 * 180.02562 * 23 22 20
26 26 N 1.31414 * 120.00164 * 359.97438 * 25 23 22
27 27 Si 1.86799 * 119.99948 * 179.97438 * 25 23 22
28 28 H 1.48502 * 109.47154 * 359.97438 * 27 25 23
29 29 H 1.48499 * 109.47259 * 119.99448 * 27 25 23
30 30 H 1.48501 * 109.47341 * 239.99682 * 27 25 23
31 31 H 1.09000 * 109.47098 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.46990 * 300.00210 * 1 2 3
33 33 H 1.08999 * 109.47111 * 59.99896 * 1 2 3
34 34 H 1.09006 * 109.47340 * 294.11058 * 5 3 2
35 35 H 1.09001 * 109.47104 * 54.10777 * 5 3 2
36 36 H 1.08998 * 109.47576 * 174.10791 * 5 3 2
37 37 H 1.09346 * 108.41284 * 29.69599 * 9 8 6
38 38 H 1.08920 * 109.13021 * 147.25093 * 9 8 6
39 39 H 1.09173 * 108.81478 * 58.96229 * 10 9 8
40 40 H 1.09286 * 108.53518 * 176.19932 * 10 9 8
41 41 H 1.09358 * 110.61173 * 211.51965 * 13 11 10
42 42 H 1.09303 * 110.69106 * 333.11872 * 13 11 10
43 43 H 1.09102 * 110.57669 * 252.77870 * 14 13 11
44 44 H 1.09264 * 110.29446 * 131.38299 * 14 13 11
45 45 H 1.08962 * 109.65497 * 252.58920 * 17 8 6
46 46 H 1.09037 * 109.54626 * 12.89184 * 17 8 6
47 47 H 1.08995 * 109.47002 * 192.36863 * 19 18 15
48 48 H 1.09010 * 109.47218 * 312.36382 * 19 18 15
49 49 H 0.96999 * 119.99718 * 359.97438 * 22 20 19
50 50 H 0.97002 * 119.99612 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3450 1.9993 -0.5139
5 6 2.2177 1.7714 1.4424
6 6 3.3386 1.2638 -0.7105
7 8 3.9194 0.2082 -0.8490
8 7 3.8816 2.4006 -1.1922
9 6 3.2434 3.6762 -0.9424
10 6 2.2542 4.0705 -2.0186
11 6 2.8703 4.2622 -3.3869
12 1 2.0988 4.4991 -4.1299
13 6 3.9163 5.3904 -3.2976
14 6 5.2467 4.6736 -3.0031
15 6 4.9793 3.1961 -3.2449
16 1 5.6796 2.8342 -4.0004
17 6 5.1490 2.3490 -1.9815
18 7 3.6005 3.0199 -3.7570
19 6 3.5974 2.8113 -5.2108
20 6 4.1253 1.4345 -5.5220
21 8 4.4697 0.6992 -4.6209
22 7 4.2136 1.0199 -6.8013
23 6 4.6934 -0.2329 -7.0843
24 1 5.0009 -0.8872 -6.2820
25 6 4.7850 -0.6602 -8.4032
26 7 4.4113 0.1363 -9.3794
27 14 5.4393 -2.3668 -8.7889
28 1 5.7899 -3.0601 -7.5233
29 1 4.3991 -3.1449 -9.5083
30 1 6.6497 -2.2519 -9.6415
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 1.2490 1.9020 1.9250
35 1 2.7965 1.0245 1.9858
36 1 2.7553 2.7195 1.4442
37 1 2.7135 3.6163 0.0121
38 1 4.0080 4.4473 -0.8578
39 1 1.4834 3.3004 -2.0875
40 1 1.7713 5.0047 -1.7213
41 1 3.9768 5.9352 -4.2439
42 1 3.6672 6.0850 -2.4912
43 1 5.5524 4.8420 -1.9694
44 1 6.0273 5.0307 -3.6791
45 1 5.9697 2.7436 -1.3832
46 1 5.3633 1.3169 -2.2603
47 1 2.5794 2.9042 -5.5890
48 1 4.2314 3.5596 -5.6867
49 1 3.9371 1.6075 -7.5217
50 1 4.4749 -0.1622 -10.3002
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733388936.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:33:30
Heat of formation + Delta-G solvation = -90.213771 kcal
Electronic energy + Delta-G solvation = -32207.141602 eV
Core-core repulsion = 28042.152948 eV
Total energy + Delta-G solvation = -4164.988654 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.80864 -39.24322 -37.80446 -37.24573 -35.07739 -33.84836 -33.01696 -31.91195
-31.34530 -31.03679 -28.10819 -27.11555 -26.83182 -25.76754 -24.45839 -23.81925
-22.21038 -20.68944 -19.71634 -19.25155 -18.73575 -17.82061 -17.34725 -16.61538
-16.17292 -15.91587 -15.52340 -15.22027 -14.95997 -14.87251 -14.42855 -14.26275
-14.15144 -13.90509 -13.63667 -13.44393 -13.27986 -13.06525 -12.64657 -12.61409
-12.35406 -12.18066 -12.05785 -11.95007 -11.81013 -11.70273 -11.46851 -11.23865
-11.14266 -11.03903 -10.84206 -10.75714 -10.58957 -10.27533 -10.25093 -10.14200
-9.91761 -9.42220 -9.14178 -8.40821 -8.33144 -7.96844 -7.86951 -6.34312
-3.74149 2.81665 3.12301 3.22115 3.32256 3.41067 3.84906 3.98975
4.04134 4.28550 4.51750 4.57254 4.63062 4.75630 4.82821 4.86991
4.96243 5.08258 5.15568 5.17703 5.20237 5.31044 5.32512 5.36904
5.39248 5.45994 5.51961 5.54697 5.61579 5.62613 5.65484 5.76642
5.82962 5.85048 5.88310 5.94079 5.97164 6.01686 6.14119 6.24054
6.34576 6.54093 6.72628 7.04338 7.21690 7.30336 7.63530 7.74625
8.15329 8.57896 8.70916 9.27458 9.63374 10.16315 10.83846
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.011619 B = 0.003758 C = 0.003163
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2409.250256 B = 7449.280295 C = 8850.930020
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.358 6.358
3 C 0.071 3.929
4 H 0.081 0.919
5 C -0.172 4.172
6 C 0.521 3.479
7 O -0.510 6.510
8 N -0.588 5.588
9 C 0.110 3.890
10 C -0.126 4.126
11 C 0.067 3.933
12 H 0.084 0.916
13 C -0.143 4.143
14 C -0.139 4.139
15 C 0.060 3.940
16 H 0.082 0.918
17 C 0.142 3.858
18 N -0.471 5.471
19 C 0.038 3.962
20 C 0.442 3.558
21 O -0.564 6.564
22 N -0.569 5.569
23 C -0.293 4.293
24 H 0.103 0.897
25 C 0.020 3.980
26 N -0.905 5.905
27 Si 0.927 3.073
28 H -0.268 1.268
29 H -0.282 1.282
30 H -0.283 1.283
31 H 0.089 0.911
32 H 0.039 0.961
33 H 0.043 0.957
34 H 0.066 0.934
35 H 0.072 0.928
36 H 0.073 0.927
37 H 0.072 0.928
38 H 0.074 0.926
39 H 0.064 0.936
40 H 0.071 0.929
41 H 0.064 0.936
42 H 0.072 0.928
43 H 0.071 0.929
44 H 0.067 0.933
45 H 0.058 0.942
46 H 0.106 0.894
47 H 0.085 0.915
48 H 0.047 0.953
49 H 0.390 0.610
50 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.436 15.143 17.117 23.743
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.276 6.276
3 C 0.009 3.991
4 H 0.099 0.901
5 C -0.229 4.229
6 C 0.307 3.693
7 O -0.384 6.384
8 N -0.323 5.323
9 C -0.014 4.014
10 C -0.165 4.165
11 C -0.042 4.042
12 H 0.102 0.898
13 C -0.183 4.183
14 C -0.178 4.178
15 C -0.050 4.050
16 H 0.100 0.900
17 C 0.020 3.980
18 N -0.193 5.193
19 C -0.094 4.094
20 C 0.227 3.773
21 O -0.446 6.446
22 N -0.207 5.207
23 C -0.422 4.422
24 H 0.121 0.879
25 C -0.180 4.180
26 N -0.548 5.548
27 Si 0.754 3.246
28 H -0.192 1.192
29 H -0.208 1.208
30 H -0.209 1.209
31 H 0.107 0.893
32 H 0.058 0.942
33 H 0.062 0.938
34 H 0.085 0.915
35 H 0.091 0.909
36 H 0.091 0.909
37 H 0.090 0.910
38 H 0.092 0.908
39 H 0.083 0.917
40 H 0.089 0.911
41 H 0.083 0.917
42 H 0.091 0.909
43 H 0.090 0.910
44 H 0.086 0.914
45 H 0.077 0.923
46 H 0.125 0.875
47 H 0.104 0.896
48 H 0.066 0.934
49 H 0.223 0.777
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -6.021 13.342 17.680 22.953
hybrid contribution 0.106 0.677 -1.455 1.608
sum -5.915 14.019 16.225 22.243
Atomic orbital electron populations
1.22852 0.80997 1.03125 0.99724 1.88077 1.19340 1.25315 1.94869
1.21993 0.94174 0.86617 0.96271 0.90109 1.22295 1.02962 1.02136
0.95539 1.20143 0.86272 0.83825 0.79083 1.90732 1.61997 1.29425
1.56196 1.47753 1.25606 1.05412 1.53510 1.20903 0.96655 0.86549
0.97342 1.21450 0.98770 1.01404 0.94861 1.22524 0.96376 0.88382
0.96879 0.89818 1.22851 0.95181 0.98269 1.01960 1.22425 0.97692
0.95587 1.02107 1.22398 0.91423 0.93188 0.97960 0.89997 1.22058
0.83383 1.03276 0.89255 1.64370 1.10998 1.32518 1.11457 1.22055
1.01537 0.97046 0.88755 1.19761 0.85167 0.88577 0.83782 1.90586
1.52743 1.56095 1.45221 1.41863 1.57379 1.15828 1.05609 1.19749
1.38214 0.91372 0.92893 0.87905 1.25219 0.97883 0.99720 0.95215
1.69624 1.48566 1.36722 0.99852 0.85833 0.78241 0.81893 0.78622
1.19181 1.20827 1.20870 0.89278 0.94194 0.93830 0.91536 0.90911
0.90872 0.91020 0.90756 0.91683 0.91055 0.91742 0.90891 0.91024
0.91384 0.92346 0.87543 0.89636 0.93446 0.77723 0.92105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.32 10.82 101.05 1.09 1.41 16
2 O -0.36 -5.60 9.96 -54.29 -0.54 -6.14 16
3 C 0.07 0.94 2.30 -27.89 -0.06 0.88 16
4 H 0.08 0.90 5.82 -51.93 -0.30 0.60 16
5 C -0.17 -1.65 9.18 37.15 0.34 -1.31 16
6 C 0.52 9.02 6.95 -10.94 -0.08 8.95 16
7 O -0.51 -11.69 16.07 -13.51 -0.22 -11.91 16
8 N -0.59 -8.49 2.48 -173.41 -0.43 -8.92 16
9 C 0.11 1.08 4.56 -5.76 -0.03 1.05 16
10 C -0.13 -1.20 4.95 -28.41 -0.14 -1.34 16
11 C 0.07 0.76 3.22 -66.96 -0.22 0.55 16
12 H 0.08 0.90 7.74 -51.53 -0.40 0.50 16
13 C -0.14 -1.33 5.99 -25.65 -0.15 -1.49 16
14 C -0.14 -1.49 5.73 -26.70 -0.15 -1.64 16
15 C 0.06 0.90 1.89 -67.47 -0.13 0.77 16
16 H 0.08 1.46 6.91 -51.82 -0.36 1.11 16
17 C 0.14 2.26 5.98 -2.40 -0.01 2.25 16
18 N -0.47 -7.49 3.76 -218.14 -0.82 -8.31 16
19 C 0.04 0.67 5.20 -4.99 -0.03 0.65 16
20 C 0.44 10.61 7.25 -10.99 -0.08 10.53 16
21 O -0.56 -15.64 14.53 5.55 0.08 -15.56 16
22 N -0.57 -14.72 5.29 -10.97 -0.06 -14.78 16
23 C -0.29 -8.40 9.68 -14.93 -0.14 -8.54 16
24 H 0.10 3.14 7.16 -52.49 -0.38 2.77 16
25 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16
26 N -0.91 -25.19 13.05 55.50 0.72 -24.47 16
27 Si 0.93 21.85 29.55 -169.99 -5.02 16.82 16
28 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
32 H 0.04 0.32 8.01 -51.93 -0.42 -0.09 16
33 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16
34 H 0.07 0.49 8.01 -51.93 -0.42 0.08 16
35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
36 H 0.07 0.57 6.08 -51.93 -0.32 0.25 16
37 H 0.07 0.55 4.57 -51.73 -0.24 0.32 16
38 H 0.07 0.62 5.70 -51.97 -0.30 0.33 16
39 H 0.06 0.72 6.98 -51.83 -0.36 0.35 16
40 H 0.07 0.47 8.11 -51.77 -0.42 0.05 16
41 H 0.06 0.59 8.17 -51.73 -0.42 0.17 16
42 H 0.07 0.53 7.74 -51.76 -0.40 0.13 16
43 H 0.07 0.66 6.45 -51.87 -0.33 0.32 16
44 H 0.07 0.71 8.16 -51.78 -0.42 0.29 16
45 H 0.06 0.77 7.82 -51.95 -0.41 0.36 16
46 H 0.11 2.24 6.63 -51.91 -0.34 1.90 16
47 H 0.09 1.40 7.86 -51.93 -0.41 0.99 16
48 H 0.05 0.77 8.06 -51.92 -0.42 0.35 16
49 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16
50 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16
LS Contribution 381.77 15.07 5.75 5.75
Total: -1.00 -36.68 381.77 -8.19 -44.88
By element:
Atomic # 1 Polarization: 17.23 SS G_CDS: -7.78 Total: 9.45 kcal
Atomic # 6 Polarization: 13.07 SS G_CDS: 0.12 Total: 13.18 kcal
Atomic # 7 Polarization: -55.89 SS G_CDS: -0.58 Total: -56.47 kcal
Atomic # 8 Polarization: -32.94 SS G_CDS: -0.68 Total: -33.61 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -36.68 -8.19 -44.88 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733388936.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.337 kcal
(2) G-P(sol) polarization free energy of solvation -36.685 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.214 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds