Wall clock time and date at job start Tue Mar 31 2020 22:33:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42896 * 114.00093 * 2 1
4 4 H 1.09004 * 109.47136 * 329.99706 * 3 2 1
5 5 C 1.52993 * 109.47405 * 89.99969 * 3 2 1
6 6 C 1.50699 * 109.47082 * 210.00322 * 3 2 1
7 7 O 1.21284 * 119.99960 * 339.94984 * 6 3 2
8 8 N 1.34876 * 120.00075 * 159.95716 * 6 3 2
9 9 C 1.44806 * 120.22738 * 4.65428 * 8 6 3
10 10 C 1.51402 * 113.24968 * 269.16760 * 9 8 6
11 11 C 1.51276 * 114.19218 * 297.39344 * 10 9 8
12 12 H 1.09695 * 110.70644 * 177.31195 * 11 10 9
13 13 C 1.54117 * 108.46826 * 299.33563 * 11 10 9
14 14 C 1.53964 * 104.87466 * 92.41403 * 13 11 10
15 15 C 1.52081 * 105.66413 * 12.34174 * 14 13 11
16 16 H 1.09192 * 108.61914 * 122.47835 * 15 14 13
17 17 C 1.49398 * 120.07409 * 184.37927 * 8 6 3
18 18 N 1.48133 * 109.52208 * 4.06697 * 15 14 13
19 19 C 1.46870 * 111.16817 * 101.48961 * 18 15 14
20 20 C 1.50699 * 109.47389 * 72.36294 * 19 18 15
21 21 O 1.21291 * 119.99663 * 0.02562 * 20 19 18
22 22 N 1.34776 * 120.00093 * 179.97438 * 20 19 18
23 23 C 1.37099 * 120.00064 * 180.02562 * 22 20 19
24 24 H 1.07998 * 119.99485 * 359.97438 * 23 22 20
25 25 C 1.38946 * 119.99939 * 180.02562 * 23 22 20
26 26 N 1.31414 * 120.00164 * 359.97438 * 25 23 22
27 27 Si 1.86799 * 119.99948 * 179.97438 * 25 23 22
28 28 H 1.48502 * 109.47154 * 359.97438 * 27 25 23
29 29 H 1.48499 * 109.47259 * 119.99448 * 27 25 23
30 30 H 1.48501 * 109.47341 * 239.99682 * 27 25 23
31 31 H 1.09000 * 109.47098 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.46990 * 300.00210 * 1 2 3
33 33 H 1.08999 * 109.47111 * 59.99896 * 1 2 3
34 34 H 1.09006 * 109.47340 * 294.11058 * 5 3 2
35 35 H 1.09001 * 109.47104 * 54.10777 * 5 3 2
36 36 H 1.08998 * 109.47576 * 174.10791 * 5 3 2
37 37 H 1.09346 * 108.41284 * 29.69599 * 9 8 6
38 38 H 1.08920 * 109.13021 * 147.25093 * 9 8 6
39 39 H 1.09173 * 108.81478 * 58.96229 * 10 9 8
40 40 H 1.09286 * 108.53518 * 176.19932 * 10 9 8
41 41 H 1.09358 * 110.61173 * 211.51965 * 13 11 10
42 42 H 1.09303 * 110.69106 * 333.11872 * 13 11 10
43 43 H 1.09102 * 110.57669 * 252.77870 * 14 13 11
44 44 H 1.09264 * 110.29446 * 131.38299 * 14 13 11
45 45 H 1.08962 * 109.65497 * 252.58920 * 17 8 6
46 46 H 1.09037 * 109.54626 * 12.89184 * 17 8 6
47 47 H 1.08995 * 109.47002 * 192.36863 * 19 18 15
48 48 H 1.09010 * 109.47218 * 312.36382 * 19 18 15
49 49 H 0.96999 * 119.99718 * 359.97438 * 22 20 19
50 50 H 0.97002 * 119.99612 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3450 1.9993 -0.5139
5 6 2.2177 1.7714 1.4424
6 6 3.3386 1.2638 -0.7105
7 8 3.9194 0.2082 -0.8490
8 7 3.8816 2.4006 -1.1922
9 6 3.2434 3.6762 -0.9424
10 6 2.2542 4.0705 -2.0186
11 6 2.8703 4.2622 -3.3869
12 1 2.0988 4.4991 -4.1299
13 6 3.9163 5.3904 -3.2976
14 6 5.2467 4.6736 -3.0031
15 6 4.9793 3.1961 -3.2449
16 1 5.6796 2.8342 -4.0004
17 6 5.1490 2.3490 -1.9815
18 7 3.6005 3.0199 -3.7570
19 6 3.5974 2.8113 -5.2108
20 6 4.1253 1.4345 -5.5220
21 8 4.4697 0.6992 -4.6209
22 7 4.2136 1.0199 -6.8013
23 6 4.6934 -0.2329 -7.0843
24 1 5.0009 -0.8872 -6.2820
25 6 4.7850 -0.6602 -8.4032
26 7 4.4113 0.1363 -9.3794
27 14 5.4393 -2.3668 -8.7889
28 1 5.7899 -3.0601 -7.5233
29 1 4.3991 -3.1449 -9.5083
30 1 6.6497 -2.2519 -9.6415
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 1.2490 1.9020 1.9250
35 1 2.7965 1.0245 1.9858
36 1 2.7553 2.7195 1.4442
37 1 2.7135 3.6163 0.0121
38 1 4.0080 4.4473 -0.8578
39 1 1.4834 3.3004 -2.0875
40 1 1.7713 5.0047 -1.7213
41 1 3.9768 5.9352 -4.2439
42 1 3.6672 6.0850 -2.4912
43 1 5.5524 4.8420 -1.9694
44 1 6.0273 5.0307 -3.6791
45 1 5.9697 2.7436 -1.3832
46 1 5.3633 1.3169 -2.2603
47 1 2.5794 2.9042 -5.5890
48 1 4.2314 3.5596 -5.6867
49 1 3.9371 1.6075 -7.5217
50 1 4.4749 -0.1622 -10.3002
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733388936.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:33:29
Heat of formation + Delta-G solvation = -118.903847 kcal
Electronic energy + Delta-G solvation = -32208.385697 eV
Core-core repulsion = 28042.152948 eV
Total energy + Delta-G solvation = -4166.232749 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.90870 -40.52566 -39.57265 -38.41892 -36.34592 -35.89016 -34.04324 -33.39392
-32.90841 -32.22680 -29.15180 -28.42567 -27.69458 -27.14341 -25.89596 -25.16197
-23.10429 -21.72591 -21.23429 -20.47630 -20.08593 -19.80651 -18.48459 -17.76476
-17.53720 -17.27085 -16.60418 -16.53208 -16.33241 -16.13048 -15.90239 -15.68655
-15.62746 -15.28951 -14.79292 -14.62212 -14.35876 -14.22243 -13.89326 -13.65288
-13.58537 -13.42980 -13.32314 -13.21650 -13.01280 -12.88842 -12.69871 -12.61588
-12.43962 -12.25395 -12.17916 -12.09679 -11.93980 -11.71176 -11.56218 -11.50438
-11.08710 -10.93472 -10.35935 -10.27469 -10.00128 -9.50492 -9.27543 -8.48839
-5.96525 1.32008 1.36324 1.51139 1.60735 1.98961 2.07298 2.26419
2.77984 3.01120 3.17716 3.36489 3.59225 3.67555 3.74917 3.87333
3.97149 4.03174 4.10304 4.19707 4.27632 4.35421 4.42927 4.43540
4.47840 4.52685 4.53196 4.54353 4.61150 4.71336 4.78845 4.82384
4.83375 4.85571 4.88624 4.99625 5.07370 5.14215 5.21755 5.24892
5.30802 5.38582 5.48549 5.64534 5.92313 6.07527 6.12794 6.21699
6.61015 6.63026 7.13551 7.34608 7.56914 8.15854 8.69090
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.011619 B = 0.003758 C = 0.003163
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2409.250256 B = 7449.280295 C = 8850.930020
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.406 6.406
3 C 0.075 3.925
4 H 0.107 0.893
5 C -0.163 4.163
6 C 0.503 3.497
7 O -0.590 6.590
8 N -0.579 5.579
9 C 0.096 3.904
10 C -0.124 4.124
11 C 0.060 3.940
12 H 0.094 0.906
13 C -0.132 4.132
14 C -0.130 4.130
15 C 0.067 3.933
16 H 0.036 0.964
17 C 0.142 3.858
18 N -0.500 5.500
19 C 0.055 3.945
20 C 0.437 3.563
21 O -0.609 6.609
22 N -0.578 5.578
23 C -0.329 4.329
24 H 0.069 0.931
25 C -0.011 4.011
26 N -0.920 5.920
27 Si 0.988 3.012
28 H -0.281 1.281
29 H -0.268 1.268
30 H -0.266 1.266
31 H 0.090 0.910
32 H 0.073 0.927
33 H 0.046 0.954
34 H 0.098 0.902
35 H 0.051 0.949
36 H 0.097 0.903
37 H 0.102 0.898
38 H 0.100 0.900
39 H 0.047 0.953
40 H 0.121 0.879
41 H 0.069 0.931
42 H 0.110 0.890
43 H 0.095 0.905
44 H 0.070 0.930
45 H 0.085 0.915
46 H 0.038 0.962
47 H 0.104 0.896
48 H 0.067 0.933
49 H 0.395 0.605
50 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.275 19.204 18.289 27.781
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.325 6.325
3 C 0.014 3.986
4 H 0.124 0.876
5 C -0.220 4.220
6 C 0.292 3.708
7 O -0.469 6.469
8 N -0.312 5.312
9 C -0.026 4.026
10 C -0.163 4.163
11 C -0.047 4.047
12 H 0.112 0.888
13 C -0.170 4.170
14 C -0.169 4.169
15 C -0.043 4.043
16 H 0.055 0.945
17 C 0.019 3.981
18 N -0.223 5.223
19 C -0.076 4.076
20 C 0.224 3.776
21 O -0.493 6.493
22 N -0.217 5.217
23 C -0.458 4.458
24 H 0.087 0.913
25 C -0.210 4.210
26 N -0.562 5.562
27 Si 0.812 3.188
28 H -0.206 1.206
29 H -0.193 1.193
30 H -0.191 1.191
31 H 0.108 0.892
32 H 0.092 0.908
33 H 0.065 0.935
34 H 0.116 0.884
35 H 0.070 0.930
36 H 0.115 0.885
37 H 0.120 0.880
38 H 0.118 0.882
39 H 0.066 0.934
40 H 0.139 0.861
41 H 0.088 0.912
42 H 0.129 0.871
43 H 0.113 0.887
44 H 0.088 0.912
45 H 0.103 0.897
46 H 0.057 0.943
47 H 0.122 0.878
48 H 0.085 0.915
49 H 0.228 0.772
50 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -7.899 17.504 18.837 26.900
hybrid contribution 0.674 -0.586 -1.807 2.015
sum -7.225 16.918 17.030 25.069
Atomic orbital electron populations
1.23062 0.78732 1.03948 1.01446 1.88024 1.21997 1.27199 1.95230
1.22139 0.91820 0.86392 0.98267 0.87583 1.22280 1.04754 1.02345
0.92616 1.21192 0.87540 0.83388 0.78721 1.90687 1.64313 1.32400
1.59501 1.47867 1.24880 1.06789 1.51636 1.21371 0.97733 0.84474
0.98986 1.21500 0.98028 1.03267 0.93511 1.22762 0.96798 0.86974
0.98214 0.88833 1.22818 0.92808 0.97625 1.03795 1.22361 0.99049
0.91839 1.03673 1.22315 0.90263 0.95948 0.95778 0.94544 1.21866
0.85469 0.99865 0.90904 1.64343 1.11985 1.36270 1.09746 1.21831
1.02197 0.92718 0.90889 1.20995 0.83375 0.90724 0.82520 1.90580
1.54151 1.58228 1.46363 1.41916 1.57977 1.15235 1.06558 1.19582
1.40699 0.92734 0.92833 0.91292 1.25936 0.97458 1.03167 0.94475
1.69669 1.48275 1.37968 1.00260 0.84950 0.78427 0.77495 0.77922
1.20598 1.19335 1.19145 0.89156 0.90849 0.93516 0.88373 0.92998
0.88455 0.88039 0.88152 0.93388 0.86127 0.91227 0.87116 0.88676
0.91159 0.89702 0.94309 0.87808 0.91526 0.77160 0.91325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.49 10.82 113.37 1.23 1.71 16
2 O -0.41 -12.95 9.96 -130.75 -1.30 -14.25 16
3 C 0.07 1.92 2.30 29.85 0.07 1.99 16
4 H 0.11 2.10 5.82 -2.38 -0.01 2.09 16
5 C -0.16 -2.70 9.18 71.98 0.66 -2.04 16
6 C 0.50 18.19 6.95 87.64 0.61 18.80 16
7 O -0.59 -29.76 16.07 15.18 0.24 -29.51 16
8 N -0.58 -16.59 2.48 -820.87 -2.03 -18.62 16
9 C 0.10 1.49 4.56 86.17 0.39 1.89 16
10 C -0.12 -1.78 4.95 29.51 0.15 -1.64 16
11 C 0.06 1.14 3.22 44.37 0.14 1.28 16
12 H 0.09 1.63 7.74 -2.02 -0.02 1.61 16
13 C -0.13 -1.77 5.99 31.30 0.19 -1.58 16
14 C -0.13 -2.39 5.73 30.62 0.18 -2.21 16
15 C 0.07 2.03 1.89 44.39 0.08 2.11 16
16 H 0.04 1.41 6.91 -2.29 -0.02 1.39 16
17 C 0.14 4.78 5.98 85.84 0.51 5.30 16
18 N -0.50 -15.74 3.76 -844.08 -3.18 -18.91 16
19 C 0.06 1.98 5.20 85.56 0.44 2.43 16
20 C 0.44 22.26 7.25 87.66 0.64 22.90 16
21 O -0.61 -36.82 14.53 -3.06 -0.04 -36.87 16
22 N -0.58 -31.52 5.29 -306.99 -1.62 -33.14 16
23 C -0.33 -19.96 9.68 84.04 0.81 -19.15 16
24 H 0.07 4.58 7.16 -2.91 -0.02 4.56 16
25 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16
26 N -0.92 -51.56 13.05 21.66 0.28 -51.28 16
27 Si 0.99 45.84 29.55 68.60 2.03 47.87 16
28 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16
29 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
30 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16
31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
32 H 0.07 0.98 8.01 -2.39 -0.02 0.96 16
33 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16
34 H 0.10 1.03 8.01 -2.38 -0.02 1.01 16
35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16
36 H 0.10 1.10 6.08 -2.39 -0.01 1.08 16
37 H 0.10 1.02 4.57 -2.20 -0.01 1.01 16
38 H 0.10 1.10 5.70 -2.43 -0.01 1.08 16
39 H 0.05 0.88 6.98 -2.30 -0.02 0.87 16
40 H 0.12 0.68 8.11 -2.24 -0.02 0.66 16
41 H 0.07 0.92 8.17 -2.20 -0.02 0.91 16
42 H 0.11 0.75 7.74 -2.23 -0.02 0.74 16
43 H 0.09 1.32 6.45 -2.33 -0.02 1.30 16
44 H 0.07 1.29 8.16 -2.25 -0.02 1.27 16
45 H 0.09 2.30 7.82 -2.41 -0.02 2.28 16
46 H 0.04 1.84 6.63 -2.37 -0.02 1.82 16
47 H 0.10 3.32 7.86 -2.39 -0.02 3.30 16
48 H 0.07 2.12 8.06 -2.38 -0.02 2.10 16
49 H 0.39 20.26 7.90 -92.71 -0.73 19.53 16
50 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16
Total: -1.00 -92.20 381.77 1.19 -91.02
By element:
Atomic # 1 Polarization: 31.82 SS G_CDS: 0.24 Total: 32.06 kcal
Atomic # 6 Polarization: 25.07 SS G_CDS: 6.57 Total: 31.64 kcal
Atomic # 7 Polarization: -115.41 SS G_CDS: -6.55 Total: -121.96 kcal
Atomic # 8 Polarization: -79.52 SS G_CDS: -1.10 Total: -80.63 kcal
Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal
Total: -92.20 1.19 -91.02 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733388936.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.886 kcal
(2) G-P(sol) polarization free energy of solvation -92.203 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.018 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.904 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds