Wall clock time and date at job start Tue Mar 31 2020 22:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 113.99997 * 2 1 4 4 H 1.08998 * 109.47444 * 30.00008 * 3 2 1 5 5 C 1.52998 * 109.47143 * 269.99964 * 3 2 1 6 6 C 1.50698 * 109.46976 * 150.00048 * 3 2 1 7 7 O 1.21283 * 120.00369 * 14.08604 * 6 3 2 8 8 N 1.34780 * 119.99776 * 194.07966 * 6 3 2 9 9 C 1.46821 * 119.68460 * 175.20847 * 8 6 3 10 10 C 1.53425 * 107.73515 * 232.05674 * 9 8 6 11 11 C 1.52774 * 108.55379 * 302.31767 * 10 9 8 12 12 C 1.52990 * 110.67037 * 63.52666 * 11 10 9 13 13 H 1.08999 * 111.93079 * 69.71785 * 12 11 10 14 14 C 1.45304 * 119.69038 * 354.93990 * 8 6 3 15 15 H 1.08993 * 109.84932 * 11.65528 * 14 8 6 16 16 C 1.53925 * 111.58491 * 249.18572 * 14 8 6 17 17 C 1.54236 * 104.69026 * 216.62139 * 16 14 8 18 18 N 1.48013 * 106.94422 * 358.94417 * 17 16 14 19 19 C 1.46904 * 110.99702 * 146.26681 * 18 17 16 20 20 C 1.50701 * 109.47125 * 52.92286 * 19 18 17 21 21 O 1.21296 * 120.00013 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00300 * 179.97438 * 20 19 18 23 23 C 1.37095 * 120.00476 * 179.97438 * 22 20 19 24 24 H 1.08005 * 119.99767 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00697 * 180.02562 * 23 22 20 26 26 N 1.31420 * 119.99538 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00558 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47040 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47305 * 119.99885 * 27 25 23 30 30 H 1.48505 * 109.47077 * 240.00225 * 27 25 23 31 31 H 1.09005 * 109.47517 * 300.00141 * 1 2 3 32 32 H 1.09007 * 109.47177 * 59.99666 * 1 2 3 33 33 H 1.09000 * 109.47497 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47489 * 54.17670 * 5 3 2 35 35 H 1.09000 * 109.47474 * 174.17512 * 5 3 2 36 36 H 1.09000 * 109.47357 * 294.17724 * 5 3 2 37 37 H 1.08990 * 109.80983 * 351.61849 * 9 8 6 38 38 H 1.09004 * 109.79911 * 112.49964 * 9 8 6 39 39 H 1.08998 * 109.62792 * 62.04317 * 10 9 8 40 40 H 1.09003 * 109.62147 * 182.41705 * 10 9 8 41 41 H 1.08995 * 109.23618 * 183.83114 * 11 10 9 42 42 H 1.08992 * 109.23481 * 303.22117 * 11 10 9 43 43 H 1.08994 * 110.39891 * 335.42569 * 16 14 8 44 44 H 1.08999 * 110.39403 * 97.70720 * 16 14 8 45 45 H 1.09003 * 109.96553 * 118.31606 * 17 16 14 46 46 H 1.09001 * 109.96944 * 239.53342 * 17 16 14 47 47 H 1.09007 * 109.47034 * 172.91715 * 19 18 17 48 48 H 1.08991 * 109.47789 * 292.91657 * 19 18 17 49 49 H 0.97002 * 119.99657 * 0.02562 * 22 20 19 50 50 H 0.97000 * 119.99990 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3385 1.2639 0.7104 7 8 3.8679 0.1981 0.9447 8 7 3.9384 2.4111 1.0853 9 6 5.1789 2.3605 1.8691 10 6 4.9859 3.2459 3.1072 11 6 4.6383 4.6598 2.6443 12 6 3.3058 4.6697 1.8927 13 1 2.4624 4.4807 2.5568 14 6 3.3547 3.6862 0.7049 15 1 2.3502 3.5307 0.3114 16 6 4.2233 4.4196 -0.3327 17 6 4.1062 5.9109 0.0431 18 7 3.1986 5.9918 1.2095 19 6 3.5944 7.0832 2.1097 20 6 3.7108 8.3645 1.3250 21 8 3.4865 8.3681 0.1330 22 7 4.0640 9.5064 1.9476 23 6 4.1704 10.6719 1.2337 24 1 3.9715 10.6749 0.1721 25 6 4.5350 11.8491 1.8755 26 7 4.7775 11.8453 3.1671 27 14 4.6792 13.4372 0.9028 28 1 4.3561 13.1756 -0.5229 29 1 3.7309 14.4406 1.4497 30 1 6.0660 13.9580 1.0080 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.2750 1.7029 -1.9856 35 1 2.5636 2.8050 -1.4443 36 1 2.9619 1.1382 -1.9254 37 1 5.3800 1.3344 2.1766 38 1 6.0090 2.7372 1.2714 39 1 4.1737 2.8504 3.7171 40 1 5.9063 3.2648 3.6908 41 1 4.5656 5.3143 3.5128 42 1 5.4253 5.0253 1.9848 43 1 5.2598 4.0903 -0.2614 44 1 3.8396 4.2484 -1.3385 45 1 5.0871 6.3065 0.3065 46 1 3.6903 6.4738 -0.7926 47 1 2.8421 7.2018 2.8896 48 1 4.5561 6.8476 2.5655 49 1 4.2437 9.5034 2.9009 50 1 5.0325 12.6670 3.6151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733595100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:29 Heat of formation + Delta-G solvation = -89.527549 kcal Electronic energy + Delta-G solvation = -31289.556612 eV Core-core repulsion = 27124.597715 eV Total energy + Delta-G solvation = -4164.958897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32005 -39.56448 -38.15377 -37.59681 -35.52975 -33.93888 -33.88016 -31.65884 -31.31511 -30.80343 -29.18592 -27.13739 -26.61906 -25.76172 -24.32489 -23.89463 -22.44473 -21.34466 -20.51053 -19.07946 -18.79535 -17.94486 -17.85927 -16.91169 -16.28195 -16.04197 -15.83556 -15.48491 -15.23373 -14.97392 -14.83860 -14.60079 -14.12728 -14.02604 -13.84066 -13.72357 -13.42072 -13.25927 -13.05915 -12.65196 -12.50929 -12.42022 -12.22823 -12.11514 -12.03952 -11.66537 -11.59487 -11.49119 -11.35691 -11.20333 -11.02675 -10.94398 -10.88898 -10.48469 -10.37847 -10.27801 -10.21669 -9.66396 -9.55601 -8.85497 -8.45541 -8.04803 -7.96197 -6.47117 -3.88025 2.35030 2.48538 3.12247 3.23434 3.30056 3.51003 3.83415 3.95387 4.14524 4.25764 4.37235 4.47749 4.56904 4.67324 4.73952 4.77812 4.85351 4.98068 5.00223 5.05740 5.07469 5.18831 5.22987 5.23593 5.30699 5.36512 5.37752 5.40678 5.43384 5.57126 5.69936 5.70801 5.73647 5.77064 5.85769 5.92789 5.95957 6.05979 6.19305 6.25310 6.29756 6.53992 6.71222 7.04175 7.12571 7.20343 7.50343 7.94810 8.00343 8.55265 9.12513 9.48107 9.99111 10.70560 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.002473 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.189108 B =11320.379638 C =11918.182574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.069 3.931 4 H 0.087 0.913 5 C -0.177 4.177 6 C 0.519 3.481 7 O -0.522 6.522 8 N -0.597 5.597 9 C 0.111 3.889 10 C -0.128 4.128 11 C -0.153 4.153 12 C 0.057 3.943 13 H 0.101 0.899 14 C 0.134 3.866 15 H 0.103 0.897 16 C -0.146 4.146 17 C 0.052 3.948 18 N -0.489 5.489 19 C 0.030 3.970 20 C 0.441 3.559 21 O -0.582 6.582 22 N -0.562 5.562 23 C -0.298 4.298 24 H 0.104 0.896 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.106 0.894 47 H 0.090 0.910 48 H 0.059 0.941 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -19.022 -1.311 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.280 6.280 3 C 0.008 3.992 4 H 0.105 0.895 5 C -0.235 4.235 6 C 0.306 3.694 7 O -0.397 6.397 8 N -0.331 5.331 9 C -0.011 4.011 10 C -0.167 4.167 11 C -0.191 4.191 12 C -0.053 4.053 13 H 0.119 0.881 14 C 0.029 3.971 15 H 0.121 0.879 16 C -0.185 4.185 17 C -0.075 4.075 18 N -0.213 5.213 19 C -0.102 4.102 20 C 0.227 3.773 21 O -0.466 6.466 22 N -0.198 5.198 23 C -0.428 4.428 24 H 0.122 0.878 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.123 -19.472 -2.035 20.007 hybrid contribution 0.852 1.184 0.591 1.574 sum -3.271 -18.287 -1.444 18.634 Atomic orbital electron populations 1.22898 0.80523 1.03215 1.00261 1.88031 1.19727 1.25242 1.94991 1.21977 0.93472 0.86697 0.97078 0.89519 1.22388 1.03794 1.02651 0.94657 1.20404 0.86527 0.83699 0.78792 1.90697 1.65283 1.29247 1.54507 1.47610 1.25973 1.05283 1.54198 1.21700 0.85621 1.01877 0.91899 1.21843 1.02476 0.95242 0.97157 1.22193 0.98359 0.97244 1.01327 1.23174 0.97230 0.90075 0.94778 0.88117 1.21625 0.97888 0.82582 0.94971 0.87873 1.22884 1.00301 0.96325 0.99035 1.22894 0.95484 0.93445 0.95714 1.64912 1.49731 1.00385 1.06257 1.22192 1.00537 0.91463 0.95962 1.19719 0.84419 0.84761 0.88443 1.90492 1.55276 1.85630 1.15236 1.41855 1.59864 1.06975 1.11132 1.19737 1.43470 0.84742 0.94841 0.87845 1.25270 0.97162 0.99671 0.95847 1.69620 1.46973 1.29106 1.08513 0.85806 0.77795 0.81026 0.79761 1.19210 1.20709 1.20768 0.93737 0.93655 0.89141 0.90916 0.90069 0.91119 0.88723 0.91316 0.91276 0.90454 0.90676 0.91150 0.91086 0.90477 0.93889 0.87624 0.89178 0.92355 0.77488 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.36 -4.20 9.92 -54.74 -0.54 -4.75 16 3 C 0.07 0.71 2.28 -27.88 -0.06 0.64 16 4 H 0.09 0.73 6.65 -51.93 -0.35 0.38 16 5 C -0.18 -1.53 9.18 37.16 0.34 -1.19 16 6 C 0.52 6.50 6.99 -10.98 -0.08 6.43 16 7 O -0.52 -8.49 15.92 -13.95 -0.22 -8.71 16 8 N -0.60 -6.42 2.72 -165.15 -0.45 -6.86 16 9 C 0.11 1.12 6.14 -3.65 -0.02 1.10 16 10 C -0.13 -1.16 6.10 -26.63 -0.16 -1.32 16 11 C -0.15 -1.60 3.57 -26.85 -0.10 -1.70 16 12 C 0.06 0.64 3.67 -65.76 -0.24 0.40 16 13 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.13 1.40 2.29 -67.42 -0.15 1.24 16 15 H 0.10 0.99 4.70 -51.93 -0.24 0.74 16 16 C -0.15 -1.64 5.89 -25.60 -0.15 -1.79 16 17 C 0.05 0.78 4.33 -2.56 -0.01 0.77 16 18 N -0.49 -7.23 5.26 -223.66 -1.18 -8.40 16 19 C 0.03 0.49 4.95 -4.97 -0.02 0.47 16 20 C 0.44 9.79 7.37 -10.99 -0.08 9.70 16 21 O -0.58 -14.61 13.38 5.54 0.07 -14.54 16 22 N -0.56 -13.66 5.29 -10.96 -0.06 -13.71 16 23 C -0.30 -8.05 9.68 -14.94 -0.14 -8.19 16 24 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -23.95 13.05 55.50 0.72 -23.22 16 27 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 31 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.04 0.27 7.77 -51.93 -0.40 -0.13 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.52 7.77 -51.93 -0.40 0.12 16 35 H 0.08 0.66 4.58 -51.93 -0.24 0.42 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.04 6.98 -51.93 -0.36 0.67 16 38 H 0.07 0.66 7.44 -51.93 -0.39 0.28 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.79 6.83 -51.93 -0.35 0.43 16 42 H 0.07 0.82 6.33 -51.93 -0.33 0.49 16 43 H 0.07 0.78 7.15 -51.93 -0.37 0.41 16 44 H 0.08 0.78 6.75 -51.93 -0.35 0.43 16 45 H 0.04 0.70 7.11 -51.93 -0.37 0.33 16 46 H 0.11 1.88 6.73 -51.93 -0.35 1.53 16 47 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 48 H 0.06 0.87 5.57 -51.93 -0.29 0.58 16 49 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 50 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -32.37 377.82 -8.45 -40.83 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.59 Total: 9.79 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 0.11 Total: 8.34 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.96 Total: -52.20 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.69 Total: -27.99 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.37 -8.45 -40.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733595100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.699 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds