Wall clock time and date at job start Tue Mar 31 2020 22:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 113.99997 * 2 1 4 4 H 1.08998 * 109.47444 * 30.00008 * 3 2 1 5 5 C 1.52998 * 109.47143 * 269.99964 * 3 2 1 6 6 C 1.50698 * 109.46976 * 150.00048 * 3 2 1 7 7 O 1.21283 * 120.00369 * 14.08604 * 6 3 2 8 8 N 1.34780 * 119.99776 * 194.07966 * 6 3 2 9 9 C 1.46821 * 119.68460 * 175.20847 * 8 6 3 10 10 C 1.53425 * 107.73515 * 232.05674 * 9 8 6 11 11 C 1.52774 * 108.55379 * 302.31767 * 10 9 8 12 12 C 1.52990 * 110.67037 * 63.52666 * 11 10 9 13 13 H 1.08999 * 111.93079 * 69.71785 * 12 11 10 14 14 C 1.45304 * 119.69038 * 354.93990 * 8 6 3 15 15 H 1.08993 * 109.84932 * 11.65528 * 14 8 6 16 16 C 1.53925 * 111.58491 * 249.18572 * 14 8 6 17 17 C 1.54236 * 104.69026 * 216.62139 * 16 14 8 18 18 N 1.48013 * 106.94422 * 358.94417 * 17 16 14 19 19 C 1.46904 * 110.99702 * 146.26681 * 18 17 16 20 20 C 1.50701 * 109.47125 * 52.92286 * 19 18 17 21 21 O 1.21296 * 120.00013 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00300 * 179.97438 * 20 19 18 23 23 C 1.37095 * 120.00476 * 179.97438 * 22 20 19 24 24 H 1.08005 * 119.99767 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00697 * 180.02562 * 23 22 20 26 26 N 1.31420 * 119.99538 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00558 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47040 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47305 * 119.99885 * 27 25 23 30 30 H 1.48505 * 109.47077 * 240.00225 * 27 25 23 31 31 H 1.09005 * 109.47517 * 300.00141 * 1 2 3 32 32 H 1.09007 * 109.47177 * 59.99666 * 1 2 3 33 33 H 1.09000 * 109.47497 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47489 * 54.17670 * 5 3 2 35 35 H 1.09000 * 109.47474 * 174.17512 * 5 3 2 36 36 H 1.09000 * 109.47357 * 294.17724 * 5 3 2 37 37 H 1.08990 * 109.80983 * 351.61849 * 9 8 6 38 38 H 1.09004 * 109.79911 * 112.49964 * 9 8 6 39 39 H 1.08998 * 109.62792 * 62.04317 * 10 9 8 40 40 H 1.09003 * 109.62147 * 182.41705 * 10 9 8 41 41 H 1.08995 * 109.23618 * 183.83114 * 11 10 9 42 42 H 1.08992 * 109.23481 * 303.22117 * 11 10 9 43 43 H 1.08994 * 110.39891 * 335.42569 * 16 14 8 44 44 H 1.08999 * 110.39403 * 97.70720 * 16 14 8 45 45 H 1.09003 * 109.96553 * 118.31606 * 17 16 14 46 46 H 1.09001 * 109.96944 * 239.53342 * 17 16 14 47 47 H 1.09007 * 109.47034 * 172.91715 * 19 18 17 48 48 H 1.08991 * 109.47789 * 292.91657 * 19 18 17 49 49 H 0.97002 * 119.99657 * 0.02562 * 22 20 19 50 50 H 0.97000 * 119.99990 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3385 1.2639 0.7104 7 8 3.8679 0.1981 0.9447 8 7 3.9384 2.4111 1.0853 9 6 5.1789 2.3605 1.8691 10 6 4.9859 3.2459 3.1072 11 6 4.6383 4.6598 2.6443 12 6 3.3058 4.6697 1.8927 13 1 2.4624 4.4807 2.5568 14 6 3.3547 3.6862 0.7049 15 1 2.3502 3.5307 0.3114 16 6 4.2233 4.4196 -0.3327 17 6 4.1062 5.9109 0.0431 18 7 3.1986 5.9918 1.2095 19 6 3.5944 7.0832 2.1097 20 6 3.7108 8.3645 1.3250 21 8 3.4865 8.3681 0.1330 22 7 4.0640 9.5064 1.9476 23 6 4.1704 10.6719 1.2337 24 1 3.9715 10.6749 0.1721 25 6 4.5350 11.8491 1.8755 26 7 4.7775 11.8453 3.1671 27 14 4.6792 13.4372 0.9028 28 1 4.3561 13.1756 -0.5229 29 1 3.7309 14.4406 1.4497 30 1 6.0660 13.9580 1.0080 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.2750 1.7029 -1.9856 35 1 2.5636 2.8050 -1.4443 36 1 2.9619 1.1382 -1.9254 37 1 5.3800 1.3344 2.1766 38 1 6.0090 2.7372 1.2714 39 1 4.1737 2.8504 3.7171 40 1 5.9063 3.2648 3.6908 41 1 4.5656 5.3143 3.5128 42 1 5.4253 5.0253 1.9848 43 1 5.2598 4.0903 -0.2614 44 1 3.8396 4.2484 -1.3385 45 1 5.0871 6.3065 0.3065 46 1 3.6903 6.4738 -0.7926 47 1 2.8421 7.2018 2.8896 48 1 4.5561 6.8476 2.5655 49 1 4.2437 9.5034 2.9009 50 1 5.0325 12.6670 3.6151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733595100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:28 Heat of formation + Delta-G solvation = -113.130502 kcal Electronic energy + Delta-G solvation = -31290.580113 eV Core-core repulsion = 27124.597715 eV Total energy + Delta-G solvation = -4165.982398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28373 -40.70990 -39.60097 -38.56030 -36.68935 -35.81021 -34.74050 -33.30318 -32.41822 -31.94157 -30.14417 -28.16729 -27.70986 -26.65763 -26.01917 -24.70843 -23.30380 -22.42577 -21.68568 -20.68060 -19.76923 -19.63665 -18.78623 -17.85997 -17.69079 -16.99004 -16.85926 -16.59204 -16.31418 -16.27552 -16.01666 -15.79933 -15.59385 -15.21485 -15.02104 -14.80833 -14.48105 -14.12594 -13.94714 -13.87200 -13.62199 -13.54012 -13.37160 -13.21972 -13.03892 -12.92587 -12.80856 -12.54104 -12.48356 -12.38296 -12.30655 -12.11206 -12.04608 -11.88396 -11.79401 -11.48211 -11.43417 -10.98172 -10.52912 -10.23550 -9.98973 -9.72355 -9.24972 -8.45741 -5.93629 1.36746 1.41509 1.42517 1.55820 1.63513 2.07078 2.28987 2.68935 2.95601 3.21902 3.28719 3.35904 3.48548 3.71163 3.80875 3.90300 3.90895 3.98167 4.02657 4.11761 4.20264 4.36432 4.41390 4.44250 4.46762 4.52719 4.54778 4.55667 4.59291 4.59906 4.72447 4.77807 4.86511 4.88282 4.93014 4.97670 5.05134 5.06368 5.17548 5.30066 5.35209 5.42814 5.44033 5.84120 5.90675 6.03085 6.08265 6.29510 6.61852 7.02441 7.14723 7.58131 8.13484 8.71886 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.002473 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.189108 B =11320.379638 C =11918.182574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.068 3.932 4 H 0.109 0.891 5 C -0.172 4.172 6 C 0.515 3.485 7 O -0.566 6.566 8 N -0.589 5.589 9 C 0.106 3.894 10 C -0.117 4.117 11 C -0.151 4.151 12 C 0.060 3.940 13 H 0.118 0.882 14 C 0.141 3.859 15 H 0.118 0.882 16 C -0.136 4.136 17 C 0.059 3.941 18 N -0.500 5.500 19 C 0.043 3.957 20 C 0.440 3.560 21 O -0.614 6.614 22 N -0.575 5.575 23 C -0.327 4.327 24 H 0.079 0.921 25 C -0.014 4.014 26 N -0.921 5.921 27 Si 0.990 3.010 28 H -0.273 1.273 29 H -0.272 1.272 30 H -0.273 1.273 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.023 0.977 46 H 0.072 0.928 47 H 0.110 0.890 48 H 0.078 0.922 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 -19.430 -0.763 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.312 6.312 3 C 0.008 3.992 4 H 0.126 0.874 5 C -0.230 4.230 6 C 0.304 3.696 7 O -0.444 6.444 8 N -0.321 5.321 9 C -0.015 4.015 10 C -0.156 4.156 11 C -0.189 4.189 12 C -0.048 4.048 13 H 0.135 0.865 14 C 0.036 3.964 15 H 0.136 0.864 16 C -0.175 4.175 17 C -0.070 4.070 18 N -0.224 5.224 19 C -0.088 4.088 20 C 0.228 3.772 21 O -0.500 6.500 22 N -0.212 5.212 23 C -0.457 4.457 24 H 0.097 0.903 25 C -0.213 4.213 26 N -0.562 5.562 27 Si 0.814 3.186 28 H -0.198 1.198 29 H -0.197 1.197 30 H -0.198 1.198 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.041 0.959 46 H 0.090 0.910 47 H 0.128 0.872 48 H 0.095 0.905 49 H 0.229 0.771 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.860 -19.877 -1.468 20.515 hybrid contribution 1.061 1.250 0.397 1.687 sum -3.799 -18.627 -1.070 19.040 Atomic orbital electron populations 1.23112 0.78613 1.04287 1.01498 1.87995 1.21920 1.26117 1.95194 1.22079 0.92482 0.86916 0.97766 0.87365 1.22365 1.04389 1.02459 0.93777 1.20914 0.87196 0.83264 0.78249 1.90675 1.66579 1.30769 1.56417 1.47611 1.25912 1.04985 1.53611 1.21782 0.85574 1.01680 0.92480 1.21767 1.03418 0.93762 0.96640 1.22153 0.97397 0.98257 1.01114 1.23287 0.98407 0.88052 0.95093 0.86456 1.21594 0.98358 0.82085 0.94339 0.86391 1.22788 1.00967 0.93668 1.00055 1.22665 0.94056 0.95398 0.94837 1.64861 1.49646 1.01537 1.06371 1.22066 1.02298 0.88916 0.95526 1.20759 0.82108 0.85947 0.88432 1.90483 1.55966 1.86470 1.17050 1.41926 1.60938 1.07125 1.11203 1.19662 1.45295 0.86529 0.94230 0.90268 1.26000 0.96412 1.02119 0.96811 1.69677 1.47107 1.30083 1.09363 0.84908 0.78193 0.77401 0.78086 1.19754 1.19739 1.19798 0.92750 0.92082 0.88324 0.89185 0.89515 0.92415 0.89640 0.90876 0.90852 0.88927 0.90185 0.92356 0.90674 0.89108 0.95859 0.91000 0.87201 0.90461 0.77089 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.49 16 2 O -0.39 -8.60 9.92 -130.33 -1.29 -9.89 16 3 C 0.07 1.27 2.28 29.85 0.07 1.33 16 4 H 0.11 1.49 6.65 -2.39 -0.02 1.47 16 5 C -0.17 -2.63 9.18 71.98 0.66 -1.97 16 6 C 0.52 12.27 6.99 87.66 0.61 12.88 16 7 O -0.57 -18.28 15.92 15.61 0.25 -18.03 16 8 N -0.59 -11.58 2.72 -794.81 -2.16 -13.74 16 9 C 0.11 1.98 6.14 86.46 0.53 2.51 16 10 C -0.12 -1.83 6.10 30.66 0.19 -1.64 16 11 C -0.15 -2.80 3.57 30.52 0.11 -2.69 16 12 C 0.06 1.21 3.67 44.90 0.16 1.37 16 13 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 14 C 0.14 2.61 2.29 45.96 0.11 2.71 16 15 H 0.12 1.89 4.70 -2.39 -0.01 1.88 16 16 C -0.14 -2.85 5.89 31.33 0.18 -2.67 16 17 C 0.06 1.74 4.33 86.51 0.37 2.12 16 18 N -0.50 -14.06 5.26 -861.54 -4.53 -18.59 16 19 C 0.04 1.36 4.95 85.56 0.42 1.78 16 20 C 0.44 19.70 7.37 87.66 0.65 20.35 16 21 O -0.61 -31.62 13.38 -3.08 -0.04 -31.66 16 22 N -0.57 -28.33 5.29 -306.99 -1.62 -29.95 16 23 C -0.33 -18.05 9.68 84.04 0.81 -17.23 16 24 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 25 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 26 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 27 Si 0.99 42.13 29.55 68.60 2.03 44.16 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 30 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 31 H 0.05 0.58 8.09 -2.38 -0.02 0.56 16 32 H 0.06 0.58 7.77 -2.38 -0.02 0.56 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.06 7.77 -2.39 -0.02 1.04 16 35 H 0.09 1.20 4.58 -2.39 -0.01 1.19 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.81 6.98 -2.39 -0.02 1.79 16 38 H 0.07 1.30 7.44 -2.38 -0.02 1.28 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.44 6.83 -2.39 -0.02 1.43 16 42 H 0.06 1.25 6.33 -2.39 -0.02 1.24 16 43 H 0.07 1.54 7.15 -2.39 -0.02 1.53 16 44 H 0.09 1.68 6.75 -2.39 -0.02 1.67 16 45 H 0.02 0.76 7.11 -2.39 -0.02 0.75 16 46 H 0.07 2.63 6.73 -2.39 -0.02 2.61 16 47 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 48 H 0.08 2.18 5.57 -2.39 -0.01 2.16 16 49 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 50 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -71.63 377.82 -0.27 -71.90 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.24 Total: 34.16 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 6.57 Total: 20.09 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -8.03 Total: -110.72 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -1.09 Total: -59.58 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -71.63 -0.27 -71.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733595100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.229 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds