Wall clock time and date at job start Tue Mar 31 2020 23:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47574 * 2 1 4 4 C 1.42895 * 114.00178 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46964 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.54137 * 304.89081 * 5 4 3 7 7 C 1.53100 * 109.50862 * 184.78134 * 5 4 3 8 8 N 1.47011 * 109.26165 * 183.21805 * 7 5 4 9 9 C 1.46898 * 111.00152 * 182.39062 * 8 7 5 10 10 C 1.50699 * 109.47087 * 170.01375 * 9 8 7 11 11 O 1.21281 * 120.00100 * 353.78777 * 10 9 8 12 12 N 1.34775 * 119.99988 * 174.06662 * 10 9 8 13 13 C 1.46496 * 119.99936 * 179.72470 * 12 10 9 14 14 C 1.50703 * 109.47025 * 90.00103 * 13 12 10 15 15 H 1.07996 * 120.00019 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99930 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99711 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00036 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47006 * 59.99925 * 18 16 14 20 20 H 1.48496 * 109.47069 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47190 * 299.99903 * 18 16 14 22 22 C 1.46506 * 119.99776 * 359.72328 * 12 10 9 23 23 C 1.52994 * 109.47318 * 90.00188 * 22 12 10 24 24 C 1.47197 * 109.47258 * 179.97438 * 23 22 12 25 25 N 9.05207 * 165.23196 * 41.09301 * 4 1 2 26 26 C 1.47015 * 110.75339 * 58.61074 * 8 7 5 27 27 C 1.53096 * 109.25957 * 301.38994 * 26 8 7 28 28 O 1.43012 * 109.26062 * 56.84799 * 27 26 8 29 29 H 1.09001 * 109.46819 * 300.00592 * 1 2 3 30 30 H 1.08998 * 109.46862 * 60.00117 * 1 2 3 31 31 H 1.08993 * 109.47031 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47232 * 239.99746 * 2 1 3 33 33 H 1.09003 * 109.47170 * 120.00246 * 2 1 3 34 34 H 1.08999 * 109.47467 * 59.99780 * 4 3 2 35 35 H 1.08999 * 109.47307 * 299.99586 * 4 3 2 36 36 H 1.09002 * 109.50404 * 63.27983 * 7 5 4 37 37 H 1.09006 * 109.50575 * 303.15290 * 7 5 4 38 38 H 1.09006 * 109.47026 * 50.01561 * 9 8 7 39 39 H 1.08999 * 109.46934 * 290.01453 * 9 8 7 40 40 H 1.09004 * 109.46693 * 209.99649 * 13 12 10 41 41 H 1.08999 * 109.47303 * 329.99505 * 13 12 10 42 42 H 0.96999 * 119.99821 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.46687 * 210.00351 * 22 12 10 44 44 H 1.09004 * 109.47197 * 329.99760 * 22 12 10 45 45 H 1.09004 * 109.47057 * 300.00168 * 23 22 12 46 46 H 1.09004 * 109.47335 * 59.99657 * 23 22 12 47 47 H 1.09008 * 109.50374 * 61.32257 * 26 8 7 48 48 H 1.09001 * 109.50898 * 181.44884 * 26 8 7 49 49 H 1.09001 * 109.50287 * 176.78306 * 27 26 8 50 50 H 1.09006 * 109.50370 * 296.86396 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 1 3.3515 3.4418 -0.8437 7 6 5.3468 3.0614 -0.1221 8 7 5.7262 4.4795 -0.0446 9 6 7.1759 4.6466 -0.2135 10 6 7.4975 6.1101 -0.3739 11 8 6.6008 6.9219 -0.4630 12 7 8.7816 6.5163 -0.4240 13 6 9.0942 7.9384 -0.5861 14 6 9.2060 8.5858 0.7702 15 1 9.0584 7.9970 1.6634 16 6 9.4955 9.9302 0.8706 17 7 9.6747 10.6472 -0.2172 18 14 9.6334 10.7329 2.5517 19 1 10.7146 10.0740 3.3276 20 1 9.9491 12.1745 2.3874 21 1 8.3453 10.5882 3.2764 22 6 9.8648 5.5358 -0.3165 23 6 10.2373 5.0321 -1.7123 24 6 11.3260 4.0474 -1.6042 25 7 12.1660 3.2865 -1.5180 26 6 5.2716 5.0720 1.2218 27 6 3.7511 4.9287 1.3292 28 8 3.3987 3.5470 1.2206 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8334 0.9765 -0.8908 35 1 3.8341 0.9764 0.8892 36 1 5.6704 2.6497 -1.0781 37 1 5.8221 2.5124 0.6909 38 1 7.5034 4.1034 -1.1000 39 1 7.6913 4.2553 0.6636 40 1 10.0397 8.0441 -1.1182 41 1 8.3007 8.4223 -1.1555 42 1 9.8780 11.5930 -0.1465 43 1 10.7342 6.0041 0.1449 44 1 9.5358 4.6968 0.2968 45 1 9.3678 4.5639 -2.1736 46 1 10.5663 5.8711 -2.3255 47 1 5.7457 4.5552 2.0563 48 1 5.5404 6.1280 1.2469 49 1 3.4163 5.3152 2.2919 50 1 3.2750 5.4908 0.5258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599618160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:08 Heat of formation + Delta-G solvation = -87.851468 kcal Electronic energy + Delta-G solvation = -29938.355279 eV Core-core repulsion = 25773.469063 eV Total energy + Delta-G solvation = -4164.886217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.10384 -39.05257 -37.95744 -36.89650 -35.62216 -35.04629 -32.91598 -32.75120 -30.96366 -30.86318 -29.55630 -27.59583 -26.38192 -24.50758 -24.02335 -23.06117 -23.02698 -22.05624 -20.44211 -18.55905 -17.66410 -17.16458 -16.87625 -16.63218 -16.47006 -16.25161 -15.76602 -15.51388 -15.34404 -15.15453 -14.77023 -14.44643 -14.26798 -14.04720 -13.86358 -13.56486 -13.46406 -13.31282 -12.95126 -12.79550 -12.50234 -12.46140 -12.28497 -12.02439 -11.93261 -11.76832 -11.72263 -11.57074 -11.32066 -11.25275 -11.10132 -11.02654 -10.86207 -10.64918 -10.52099 -10.20820 -9.87810 -9.75039 -9.72589 -9.00903 -8.49486 -8.32577 -7.87000 -6.11220 -4.16100 2.68294 2.76685 3.14137 3.26958 3.28285 3.33254 3.36410 3.52557 3.65016 3.89370 4.21815 4.39383 4.69798 4.72944 4.77497 4.87024 4.90243 4.93753 4.97400 5.04570 5.06810 5.08026 5.16703 5.20256 5.22433 5.25380 5.33158 5.34886 5.38331 5.47368 5.51599 5.57362 5.60852 5.76524 5.78875 5.82359 5.99889 6.01819 6.06557 6.72776 6.88704 6.92960 6.98995 7.17889 7.33940 7.40456 7.53331 7.84514 8.14489 8.23205 8.81599 8.97189 9.49463 10.96763 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011160 B = 0.002655 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.300797 B =10544.153748 C =12526.362613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.073 3.927 5 C 0.098 3.902 6 H 0.077 0.923 7 C 0.027 3.973 8 N -0.515 5.515 9 C 0.033 3.967 10 C 0.508 3.492 11 O -0.513 6.513 12 N -0.599 5.599 13 C 0.246 3.754 14 C -0.529 4.529 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.117 3.883 23 C -0.050 4.050 24 C 0.217 3.783 25 N -0.446 5.446 26 C 0.014 3.986 27 C 0.067 3.933 28 O -0.377 6.377 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.118 0.882 47 H 0.037 0.963 48 H 0.109 0.891 49 H 0.098 0.902 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 -19.673 -1.327 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.298 6.298 4 C -0.004 4.004 5 C 0.039 3.961 6 H 0.095 0.905 7 C -0.102 4.102 8 N -0.240 5.240 9 C -0.098 4.098 10 C 0.294 3.706 11 O -0.387 6.387 12 N -0.331 5.331 13 C 0.128 3.872 14 C -0.568 4.568 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.009 4.009 23 C -0.092 4.092 24 C -0.101 4.101 25 N -0.123 5.123 26 C -0.114 4.114 27 C -0.010 4.010 28 O -0.296 6.296 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.136 0.864 47 H 0.055 0.945 48 H 0.127 0.873 49 H 0.116 0.884 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.080 -19.830 -1.554 22.299 hybrid contribution 0.773 0.279 1.326 1.560 sum -9.307 -19.551 -0.228 21.655 Atomic orbital electron populations 1.21734 0.93719 1.02090 1.03310 1.22459 0.95726 0.83923 0.99896 1.87960 1.20415 1.26085 1.95369 1.22427 0.82098 0.95125 1.00788 1.22030 0.92643 0.92474 0.88943 0.90527 1.22681 0.95835 0.89583 1.02063 1.61792 1.12998 1.13658 1.35556 1.22152 0.88718 0.96518 1.02391 1.20113 0.83085 0.89516 0.77923 1.90682 1.45255 1.54804 1.48000 1.48238 1.03730 1.09727 1.71443 1.19335 0.97124 0.73305 0.97472 1.21356 1.48691 0.94241 0.92526 0.92542 1.24915 0.95126 0.97077 0.96837 1.69905 1.47905 1.07744 1.27567 0.86586 0.78578 0.78278 0.84146 1.20292 1.21189 1.20178 1.21307 0.93310 0.93005 0.93326 1.19907 0.92409 0.94960 1.01911 1.29148 0.94155 0.93729 0.93105 1.81239 1.11096 1.11303 1.08670 1.22968 0.96438 1.02971 0.89018 1.22659 0.93535 0.82146 1.02619 1.88008 1.79162 1.24404 1.37979 0.91735 0.91817 0.91221 0.93534 0.93476 0.91785 0.92578 0.89467 0.93862 0.88235 0.92268 0.94766 0.93498 0.92589 0.88737 0.90866 0.87596 0.86401 0.94487 0.87275 0.88366 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.21 10.31 -39.95 -0.41 -4.62 16 4 C 0.07 0.69 5.61 37.16 0.21 0.89 16 5 C 0.10 1.11 3.09 -26.68 -0.08 1.03 16 6 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 7 C 0.03 0.28 4.93 -3.71 -0.02 0.26 16 8 N -0.52 -6.94 4.42 -235.74 -1.04 -7.98 16 9 C 0.03 0.42 4.18 -4.98 -0.02 0.40 16 10 C 0.51 8.98 7.24 -10.99 -0.08 8.90 16 11 O -0.51 -11.45 14.25 5.56 0.08 -11.37 16 12 N -0.60 -10.50 2.46 -175.06 -0.43 -10.93 16 13 C 0.25 5.68 5.16 -5.19 -0.03 5.65 16 14 C -0.53 -13.81 9.39 -34.44 -0.32 -14.13 16 15 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.12 1.48 5.19 -4.04 -0.02 1.46 16 23 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 24 C 0.22 2.50 15.44 -20.74 -0.32 2.18 16 25 N -0.45 -6.35 18.54 42.18 0.78 -5.56 16 26 C 0.01 0.20 5.30 -3.71 -0.02 0.18 16 27 C 0.07 0.88 7.01 37.21 0.26 1.14 16 28 O -0.38 -5.11 10.44 -39.95 -0.42 -5.53 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.98 7.29 -51.93 -0.38 0.60 16 39 H 0.06 0.68 7.05 -51.93 -0.37 0.31 16 40 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 41 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 44 H 0.07 0.77 6.28 -51.93 -0.33 0.44 16 45 H 0.11 0.82 7.39 -51.93 -0.38 0.44 16 46 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 48 H 0.11 1.88 6.10 -51.93 -0.32 1.56 16 49 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 413.23 15.07 6.23 6.23 Total: -1.00 -33.54 413.23 -8.04 -41.58 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -8.46 Total: -2.28 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.09 Total: 8.94 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.05 Total: -48.89 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.75 Total: -21.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.54 -8.04 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599618160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.267 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds