Wall clock time and date at job start Tue Mar 31 2020 23:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 119.99997 * 2 1 4 4 N 1.34773 * 120.00328 * 179.97438 * 2 1 3 5 5 C 1.47156 * 120.98257 * 353.70295 * 4 2 1 6 6 C 1.53292 * 108.38502 * 129.44010 * 5 4 2 7 7 O 1.42959 * 109.26366 * 52.28131 * 6 5 4 8 8 C 1.42958 * 114.17127 * 297.49843 * 7 6 5 9 9 C 1.47152 * 120.98566 * 173.67932 * 4 2 1 10 10 H 1.09004 * 109.67930 * 110.79657 * 9 4 2 11 11 C 1.50703 * 109.68140 * 350.28426 * 9 4 2 12 12 O 1.21281 * 119.99405 * 303.73141 * 11 9 4 13 13 N 1.34777 * 120.00107 * 123.72787 * 11 9 4 14 14 C 1.47016 * 125.64730 * 5.04956 * 13 11 9 15 15 C 1.54324 * 107.26791 * 181.02036 * 14 13 11 16 16 H 1.09005 * 110.72210 * 263.64963 * 15 14 13 17 17 N 1.46508 * 110.72237 * 140.55806 * 15 14 13 18 18 C 1.36933 * 119.99976 * 86.44879 * 17 15 14 19 19 H 1.08001 * 119.99874 * 0.02562 * 18 17 15 20 20 C 1.38809 * 119.99985 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99939 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00288 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47057 * 89.99816 * 22 20 18 24 24 H 1.48499 * 109.47254 * 210.00233 * 22 20 18 25 25 H 1.48506 * 109.46896 * 329.99927 * 22 20 18 26 26 C 1.55155 * 102.94383 * 22.19499 * 15 14 13 27 27 C 1.52992 * 111.00780 * 82.57336 * 26 15 14 28 28 C 1.53005 * 111.00186 * 206.38712 * 26 15 14 29 29 C 1.47422 * 125.64655 * 184.73853 * 13 11 9 30 30 H 1.09004 * 109.46962 * 174.30152 * 1 2 3 31 31 H 1.08994 * 109.47310 * 294.30266 * 1 2 3 32 32 H 1.08997 * 109.47127 * 54.30726 * 1 2 3 33 33 H 1.08999 * 109.67852 * 9.71838 * 5 4 2 34 34 H 1.09004 * 109.71323 * 249.18505 * 5 4 2 35 35 H 1.09003 * 109.51424 * 172.22747 * 6 5 4 36 36 H 1.08996 * 109.51607 * 292.33209 * 6 5 4 37 37 H 1.09002 * 109.47568 * 302.57998 * 8 7 6 38 38 H 1.08998 * 109.55669 * 182.47057 * 8 7 6 39 39 H 1.08999 * 109.88399 * 300.43777 * 14 13 11 40 40 H 1.08999 * 109.88081 * 61.45351 * 14 13 11 41 41 H 0.96995 * 119.99256 * 266.45599 * 17 15 14 42 42 H 0.97003 * 120.00085 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.47119 * 59.99861 * 27 26 15 44 44 H 1.09002 * 109.47513 * 180.02562 * 27 26 15 45 45 H 1.08999 * 109.46704 * 300.00234 * 27 26 15 46 46 H 1.08997 * 109.47433 * 60.00095 * 28 26 15 47 47 H 1.09004 * 109.47070 * 179.97438 * 28 26 15 48 48 H 1.08998 * 109.47276 * 299.99264 * 28 26 15 49 49 H 1.09000 * 110.36850 * 274.75135 * 29 13 11 50 50 H 1.09006 * 110.36997 * 37.07324 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4737 -2.4501 0.1395 6 6 1.9404 -3.3835 -0.9835 7 8 3.3687 -3.4428 -0.9845 8 6 4.0064 -2.1907 -1.2477 9 6 3.6456 -1.1963 -0.1384 10 1 4.0971 -1.5141 0.8015 11 6 4.1481 0.1766 -0.5042 12 8 3.7191 0.7363 -1.4909 13 7 5.0742 0.7824 0.2652 14 6 5.7532 0.1811 1.4222 15 6 6.7037 1.2498 2.0019 16 1 7.7155 1.1141 1.6199 17 7 6.6953 1.2115 3.4665 18 6 7.5313 0.3566 4.1338 19 1 8.1972 -0.2890 3.5805 20 6 7.5230 0.3200 5.5214 21 7 6.7111 1.1065 6.1956 22 14 8.6639 -0.8457 6.4319 23 1 9.9539 -0.1627 6.7052 24 1 8.0364 -1.2507 7.7154 25 1 8.9085 -2.0504 5.5986 26 6 6.0907 2.5777 1.4840 27 6 4.9375 3.0353 2.3793 28 6 7.1588 3.6674 1.3708 29 6 5.5787 2.1554 0.0819 30 1 -0.3633 -1.0226 -0.1020 31 1 -0.3633 0.4229 0.9365 32 1 -0.3633 0.5996 -0.8346 33 1 0.3990 -2.2875 0.0588 34 1 1.7061 -2.8951 1.1071 35 1 1.5346 -4.3818 -0.8194 36 1 1.5912 -3.0018 -1.9429 37 1 3.6655 -1.8041 -2.2082 38 1 5.0871 -2.3302 -1.2743 39 1 5.0188 -0.1087 2.1737 40 1 6.3231 -0.6922 1.1049 41 1 6.0974 1.7916 3.9633 42 1 6.7055 1.0811 7.1653 43 1 5.3050 3.1922 3.3934 44 1 4.5258 3.9679 1.9933 45 1 4.1598 2.2717 2.3887 46 1 7.9338 3.3456 0.6752 47 1 6.7022 4.5872 1.0052 48 1 7.6014 3.8457 2.3508 49 1 6.3940 2.1666 -0.6415 50 1 4.7739 2.8153 -0.2422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996640969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:44 Heat of formation + Delta-G solvation = -71.249975 kcal Electronic energy + Delta-G solvation = -32307.680080 eV Core-core repulsion = 28143.513758 eV Total energy + Delta-G solvation = -4164.166322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.06919 -39.42186 -38.39522 -37.49132 -34.95995 -34.03937 -33.14592 -32.07770 -30.77683 -29.99839 -27.92737 -27.45984 -26.90098 -26.41674 -24.48002 -23.86396 -22.44175 -21.50223 -20.16572 -18.80763 -18.36627 -17.37673 -17.19463 -17.01531 -16.75514 -15.98643 -15.62107 -15.47575 -15.29900 -15.06627 -14.54979 -14.35848 -14.06175 -13.84876 -13.77184 -13.55317 -13.28702 -12.96732 -12.64897 -12.51621 -12.42240 -12.26712 -12.15902 -11.94113 -11.80964 -11.67917 -11.45116 -11.24551 -11.15221 -11.01332 -10.88810 -10.51507 -10.48119 -10.41069 -10.20176 -9.82487 -9.65329 -9.61219 -9.38584 -8.97419 -8.76482 -8.11497 -7.06303 -5.83814 -3.13824 2.38532 2.60812 3.18932 3.23075 3.39515 3.45207 3.46500 3.59517 4.35053 4.41174 4.52238 4.54495 4.72078 4.76206 4.79521 4.91452 5.06075 5.08595 5.15755 5.17829 5.25426 5.30095 5.36283 5.42717 5.54983 5.58685 5.65422 5.66608 5.78382 5.88408 5.96514 6.05437 6.11842 6.13465 6.20987 6.30875 6.40979 6.46102 6.53570 6.70838 6.72823 6.75070 6.83411 6.98165 7.17164 7.64494 7.96291 8.08602 8.34526 8.58271 9.46563 10.01898 10.37192 11.38388 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003894 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.661073 B = 7188.342741 C = 8235.694051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.500 6.500 4 N -0.610 5.610 5 C 0.070 3.930 6 C 0.044 3.956 7 O -0.372 6.372 8 C 0.065 3.935 9 C 0.093 3.907 10 H 0.100 0.900 11 C 0.553 3.447 12 O -0.537 6.537 13 N -0.605 5.605 14 C 0.072 3.928 15 C 0.182 3.818 16 H 0.066 0.934 17 N -0.712 5.712 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C -0.085 4.085 27 C -0.128 4.128 28 C -0.128 4.128 29 C 0.126 3.874 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.390 0.610 42 H 0.256 0.744 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.067 0.933 49 H 0.061 0.939 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 -5.906 -14.216 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.295 3.705 3 O -0.373 6.373 4 N -0.349 5.349 5 C -0.053 4.053 6 C -0.034 4.034 7 O -0.290 6.290 8 C -0.014 4.014 9 C -0.014 4.014 10 H 0.118 0.882 11 C 0.340 3.660 12 O -0.415 6.415 13 N -0.339 5.339 14 C -0.054 4.054 15 C 0.069 3.931 16 H 0.083 0.917 17 N -0.354 5.354 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.086 4.086 27 C -0.186 4.186 28 C -0.186 4.186 29 C 0.003 3.997 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.227 0.773 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.090 -5.331 -14.643 19.127 hybrid contribution 0.161 -0.506 0.912 1.055 sum -10.929 -5.837 -13.731 18.495 Atomic orbital electron populations 1.21968 0.91511 1.04175 1.05430 1.20845 0.90678 0.83037 0.75959 1.90820 1.68747 1.30592 1.47177 1.48053 1.05402 1.06660 1.74798 1.22622 0.98248 0.83853 1.00538 1.23031 0.81955 1.00646 0.97729 1.88003 1.18595 1.30028 1.92352 1.22825 0.99014 0.83285 0.96226 1.21871 0.82130 0.95742 1.01681 0.88205 1.19097 0.78113 0.85786 0.82986 1.90644 1.57401 1.65478 1.27929 1.48224 1.40042 1.15212 1.30445 1.23305 0.96591 0.98580 0.86891 1.21195 0.95448 0.90028 0.86403 0.91662 1.42553 1.47105 1.47301 0.98455 1.19261 1.14570 1.14669 0.89227 0.91048 1.24740 0.99622 0.99755 0.96369 1.69660 1.40296 1.41303 1.06527 0.86207 0.80229 0.80459 0.79369 1.21654 1.21802 1.20686 1.21998 0.96258 0.96391 0.93972 1.21596 0.96952 1.00210 0.99805 1.21644 0.97454 0.97014 1.02498 1.22246 0.98071 0.82824 0.96523 0.90221 0.88630 0.88690 0.87811 0.89925 0.87315 0.92366 0.91410 0.87144 0.91271 0.92545 0.77312 0.93398 0.91193 0.93452 0.92694 0.92872 0.93145 0.91401 0.92105 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.09 36.00 0.36 -1.18 16 2 C 0.51 7.29 7.41 -10.99 -0.08 7.21 16 3 O -0.50 -9.66 13.01 -19.12 -0.25 -9.91 16 4 N -0.61 -7.84 3.02 -166.05 -0.50 -8.34 16 5 C 0.07 0.58 6.57 -3.53 -0.02 0.55 16 6 C 0.04 0.35 6.98 37.31 0.26 0.61 16 7 O -0.37 -4.20 10.74 -35.23 -0.38 -4.58 16 8 C 0.06 0.79 6.26 37.31 0.23 1.02 16 9 C 0.09 1.34 3.31 -68.57 -0.23 1.12 16 10 H 0.10 1.49 6.56 -51.93 -0.34 1.15 16 11 C 0.55 9.79 4.53 -10.98 -0.05 9.74 16 12 O -0.54 -10.99 14.85 -19.12 -0.28 -11.28 16 13 N -0.61 -10.65 3.31 -170.39 -0.56 -11.21 16 14 C 0.07 1.31 5.35 -3.07 -0.02 1.29 16 15 C 0.18 3.51 2.84 -66.09 -0.19 3.32 16 16 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16 17 N -0.71 -16.90 5.08 -51.65 -0.26 -17.16 16 18 C -0.25 -6.48 9.98 -15.06 -0.15 -6.63 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 22 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.08 -1.45 0.87 -152.24 -0.13 -1.58 16 27 C -0.13 -2.32 7.94 37.15 0.30 -2.03 16 28 C -0.13 -1.95 8.68 37.16 0.32 -1.63 16 29 C 0.13 2.14 5.83 -2.41 -0.01 2.12 16 30 H 0.08 0.46 5.21 -51.93 -0.27 0.19 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.54 5.14 -51.93 -0.27 0.27 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.87 7.98 -51.93 -0.41 0.45 16 38 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.39 9.88 5.26 -40.82 -0.21 9.66 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.07 1.38 6.34 -51.93 -0.33 1.05 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 1.09 7.91 -51.93 -0.41 0.68 16 46 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.06 0.95 7.99 -51.93 -0.41 0.53 16 50 H 0.07 1.33 8.01 -51.93 -0.42 0.91 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -34.64 387.85 -8.28 -42.93 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -8.09 Total: 9.87 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 0.50 Total: 13.62 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.60 Total: -63.13 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.91 Total: -25.76 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.64 -8.28 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996640969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.323 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds