Wall clock time and date at job start Tue Mar 31 2020 23:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99904 * 2 1 4 4 H 1.09001 * 110.91936 * 26.09468 * 3 2 1 5 5 C 1.55157 * 111.00350 * 150.00256 * 3 2 1 6 6 C 1.54321 * 103.10033 * 153.66229 * 5 3 2 7 7 H 1.09004 * 109.87910 * 218.29695 * 6 5 3 8 8 C 1.50704 * 109.88116 * 97.29213 * 6 5 3 9 9 O 1.21281 * 119.99412 * 259.99667 * 8 6 5 10 10 N 1.34773 * 120.00252 * 79.99724 * 8 6 5 11 11 C 1.46496 * 119.99919 * 0.02562 * 10 8 6 12 12 C 1.46496 * 120.00048 * 179.97438 * 10 8 6 13 13 C 1.53779 * 113.61904 * 219.13630 * 12 10 8 14 14 C 1.53954 * 87.02264 * 220.05190 * 13 12 10 15 15 N 1.46507 * 113.60827 * 270.79754 * 14 13 12 16 16 C 1.36932 * 119.99786 * 252.53027 * 15 14 13 17 17 H 1.08001 * 120.00298 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99885 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99790 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00180 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46825 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46776 * 120.00030 * 20 18 16 23 23 H 1.48490 * 109.47044 * 239.99982 * 20 18 16 24 24 C 1.53773 * 87.11095 * 25.36014 * 14 13 12 25 25 N 1.47019 * 107.27531 * 337.71659 * 6 5 3 26 26 C 1.34777 * 125.65068 * 178.90607 * 25 6 5 27 27 C 1.50704 * 119.99914 * 180.02562 * 26 25 6 28 28 O 1.21277 * 119.99926 * 359.97438 * 26 25 6 29 29 C 1.47431 * 108.70142 * 358.94050 * 25 6 5 30 30 H 1.08991 * 109.46921 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46986 * 300.00260 * 1 2 3 32 32 H 1.09001 * 109.47113 * 60.00000 * 1 2 3 33 33 H 1.09002 * 110.72219 * 35.20926 * 5 3 2 34 34 H 1.09003 * 110.71618 * 272.11539 * 5 3 2 35 35 H 1.08997 * 109.47595 * 90.00034 * 11 10 8 36 36 H 1.08999 * 109.47272 * 210.00120 * 11 10 8 37 37 H 1.09000 * 109.47205 * 329.99680 * 11 10 8 38 38 H 1.09003 * 112.84807 * 350.33639 * 12 10 8 39 39 H 1.08999 * 113.61271 * 334.57336 * 13 12 10 40 40 H 1.09002 * 113.61292 * 105.46779 * 13 12 10 41 41 H 1.08998 * 113.66483 * 139.93642 * 14 13 12 42 42 H 0.97001 * 119.99997 * 72.53572 * 15 14 13 43 43 H 0.96998 * 119.99872 * 180.02562 * 19 18 16 44 44 H 1.09004 * 113.61707 * 220.09022 * 24 14 13 45 45 H 1.08997 * 113.69049 * 89.20105 * 24 14 13 46 46 H 1.08998 * 109.47014 * 89.99635 * 27 26 25 47 47 H 1.09004 * 109.46727 * 210.00203 * 27 26 25 48 48 H 1.08996 * 109.46877 * 329.99523 * 27 26 25 49 49 H 1.08999 * 110.36190 * 142.96411 * 29 25 6 50 50 H 1.08998 * 110.36491 * 265.18090 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3332 2.0330 0.4478 5 6 3.3825 1.3033 0.7242 6 6 4.1258 2.4861 0.0685 7 1 5.1777 2.2338 -0.0664 8 6 4.0004 3.7134 0.9341 9 8 3.1841 4.5676 0.6603 10 7 4.7953 3.8618 2.0123 11 6 5.7817 2.8302 2.3426 12 6 4.6738 5.0551 2.8533 13 6 6.0236 5.5978 3.3516 14 6 5.3288 5.8610 4.7000 15 7 4.7071 7.1845 4.7912 16 6 5.2709 8.1530 5.5781 17 1 6.1741 7.9415 6.1311 18 6 4.6815 9.4069 5.6649 19 7 3.5805 9.6646 4.9912 20 14 5.4510 10.7284 6.7377 21 1 6.6745 10.1904 7.3847 22 1 5.8095 11.9002 5.8989 23 1 4.4809 11.1453 7.7818 24 6 4.3437 4.7424 4.3224 25 7 3.4974 2.7261 -1.2387 26 6 3.8462 3.6909 -2.1127 27 6 3.1120 3.8227 -3.4222 28 8 4.7502 4.4537 -1.8450 29 6 2.4220 1.7369 -1.4349 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.9120 0.3677 0.5444 34 1 3.2545 1.4731 1.7933 35 1 6.7243 3.0557 1.8438 36 1 5.9375 2.8086 3.4212 37 1 5.4172 1.8588 2.0086 38 1 4.0314 5.8185 2.4145 39 1 6.8060 4.8407 3.4041 40 1 6.3449 6.5052 2.8404 41 1 5.9482 5.6239 5.5650 42 1 3.8961 7.3747 4.2942 43 1 3.1689 10.5408 5.0515 44 1 3.3107 4.9602 4.5938 45 1 4.6646 3.7504 4.6404 46 1 2.2641 4.4961 -3.2972 47 1 3.7868 4.2244 -4.1782 48 1 2.7543 2.8428 -3.7383 49 1 1.5769 2.1928 -1.9507 50 1 2.7924 0.8805 -1.9984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999176988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:52 Heat of formation + Delta-G solvation = -58.721179 kcal Electronic energy + Delta-G solvation = -30927.469160 eV Core-core repulsion = 26763.846128 eV Total energy + Delta-G solvation = -4163.623032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.07375 -39.49176 -38.57293 -37.83816 -36.29368 -34.82057 -33.02893 -32.03378 -30.05324 -29.68998 -28.91024 -27.03123 -26.89908 -25.10178 -24.86783 -23.80492 -22.75895 -21.83417 -20.42012 -18.92992 -18.21543 -17.84200 -17.36944 -17.26133 -16.78639 -16.12484 -15.86353 -15.45747 -15.27626 -15.02758 -14.90606 -14.82252 -14.14996 -13.89041 -13.63609 -13.47047 -13.23735 -13.11497 -12.94731 -12.87153 -12.67080 -12.44840 -12.31317 -12.24037 -12.08053 -11.96092 -11.84735 -11.69894 -11.47400 -11.25488 -10.86281 -10.73025 -10.26590 -10.20393 -10.10799 -9.95882 -9.84604 -9.65947 -9.60591 -8.90408 -8.80258 -8.34989 -6.98093 -5.76547 -3.06715 2.33939 2.58230 2.77712 3.13942 3.34437 3.44389 3.49499 3.52279 3.94488 4.07202 4.37756 4.57043 4.58275 4.61455 4.75343 4.89002 4.92261 4.98366 4.99470 5.05004 5.14582 5.17457 5.18070 5.20107 5.28167 5.32182 5.38475 5.41618 5.44700 5.47109 5.53844 5.57275 5.66582 5.86032 5.90808 6.03400 6.12026 6.26819 6.44615 6.60788 6.66479 6.75323 6.84214 7.07122 7.22542 7.58082 7.71920 8.01507 8.33034 8.41459 9.52126 10.09012 10.43007 11.45659 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.002601 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.079213 B =10762.311174 C =11254.356887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.076 3.924 4 H 0.087 0.913 5 C -0.119 4.119 6 C 0.121 3.879 7 H 0.101 0.899 8 C 0.508 3.492 9 O -0.524 6.524 10 N -0.600 5.600 11 C 0.073 3.927 12 C 0.127 3.873 13 C -0.182 4.182 14 C 0.173 3.827 15 N -0.706 5.706 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.012 4.012 19 N -0.929 5.929 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.168 4.168 25 N -0.603 5.603 26 C 0.532 3.468 27 C -0.166 4.166 28 O -0.528 6.528 29 C 0.085 3.915 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -25.422 -14.051 29.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.290 6.290 3 C 0.017 3.983 4 H 0.105 0.895 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.119 0.881 8 C 0.293 3.707 9 O -0.400 6.400 10 N -0.333 5.333 11 C -0.070 4.070 12 C 0.025 3.975 13 C -0.224 4.224 14 C 0.060 3.940 15 N -0.344 5.344 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.208 4.208 25 N -0.340 5.340 26 C 0.322 3.678 27 C -0.226 4.226 28 O -0.402 6.402 29 C -0.039 4.039 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.069 -24.492 -14.003 28.379 hybrid contribution -0.073 0.984 0.320 1.037 sum -3.142 -23.508 -13.683 27.381 Atomic orbital electron populations 1.22884 0.80339 1.03099 1.00537 1.87896 1.20278 1.26124 1.94730 1.23324 0.95033 0.85552 0.94406 0.89500 1.22714 0.94845 0.97396 1.00745 1.21526 0.99483 0.93566 0.84135 0.88130 1.20636 0.81217 0.87847 0.80975 1.90700 1.36048 1.42916 1.70289 1.47895 1.36439 1.21829 1.27101 1.21808 0.92341 0.90372 1.02529 1.22731 0.99540 0.86434 0.88820 1.24325 0.95672 1.00664 1.01706 1.20933 0.92947 0.86062 0.94077 1.42227 1.30068 1.07241 1.54885 1.19313 1.06794 0.91393 1.19999 0.90877 1.24797 0.97667 0.97886 1.00512 1.69688 1.20585 1.22213 1.45228 0.86092 0.78239 0.81986 0.79701 1.20485 1.21822 1.21833 1.23959 1.01621 0.99740 0.95481 1.48139 1.36052 1.32829 1.16949 1.20501 0.83677 0.78369 0.85239 1.21870 1.02350 1.04029 0.94313 1.90777 1.30919 1.41006 1.77540 1.22802 0.90628 0.92270 0.98163 0.89231 0.93515 0.93704 0.88130 0.88787 0.92472 0.90251 0.91486 0.86600 0.91010 0.90980 0.91400 0.77956 0.93434 0.91185 0.90454 0.88573 0.88725 0.90309 0.90042 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.85 101.05 1.10 1.25 16 2 O -0.37 -2.91 10.53 -35.23 -0.37 -3.28 16 3 C 0.08 0.63 3.57 -24.32 -0.09 0.55 16 4 H 0.09 0.83 7.83 -51.93 -0.41 0.42 16 5 C -0.12 -0.99 5.09 -24.90 -0.13 -1.12 16 6 C 0.12 1.40 2.38 -68.11 -0.16 1.23 16 7 H 0.10 1.07 7.29 -51.93 -0.38 0.69 16 8 C 0.51 8.14 6.05 -10.99 -0.07 8.08 16 9 O -0.52 -10.75 15.41 5.55 0.09 -10.67 16 10 N -0.60 -8.95 3.08 -173.01 -0.53 -9.48 16 11 C 0.07 0.74 8.52 59.84 0.51 1.25 16 12 C 0.13 2.29 4.09 -67.12 -0.27 2.02 16 13 C -0.18 -3.31 7.34 -25.83 -0.19 -3.50 16 14 C 0.17 3.49 4.57 -67.03 -0.31 3.18 16 15 N -0.71 -18.21 5.31 -52.55 -0.28 -18.49 16 16 C -0.24 -6.88 9.97 -15.06 -0.15 -7.03 16 17 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 20 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 C -0.17 -2.85 7.36 -25.92 -0.19 -3.04 16 25 N -0.60 -6.97 2.80 -164.01 -0.46 -7.43 16 26 C 0.53 7.27 7.30 -10.98 -0.08 7.19 16 27 C -0.17 -1.43 9.67 36.01 0.35 -1.08 16 28 O -0.53 -9.89 16.71 5.56 0.09 -9.80 16 29 C 0.08 0.67 6.03 -2.26 -0.01 0.65 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.26 8.12 -51.92 -0.42 -0.16 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.80 7.56 -51.93 -0.39 0.40 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.74 6.33 -51.93 -0.33 0.41 16 37 H 0.07 0.49 5.55 -51.93 -0.29 0.20 16 38 H 0.12 2.56 7.21 -51.93 -0.37 2.19 16 39 H 0.07 1.09 6.81 -51.93 -0.35 0.74 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 42 H 0.39 10.75 7.90 -40.82 -0.32 10.43 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.08 1.07 6.82 -51.93 -0.35 0.72 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.44 7.18 -51.93 -0.37 0.07 16 49 H 0.08 0.53 7.55 -51.93 -0.39 0.14 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -37.94 399.71 -7.69 -45.63 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.16 Total: 8.70 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 0.21 Total: 9.17 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.55 Total: -63.49 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.19 Total: -23.75 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.94 -7.69 -45.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999176988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.092 kcal (2) G-P(sol) polarization free energy of solvation -37.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds