Wall clock time and date at job start Tue Mar 31 2020 23:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 119.99946 * 2 1 4 4 N 1.34781 * 120.00017 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98064 * 6.74675 * 4 2 1 6 6 C 1.53293 * 108.38486 * 230.51177 * 5 4 2 7 7 O 1.42959 * 109.22238 * 307.70371 * 6 5 4 8 8 C 1.42964 * 114.17103 * 62.58032 * 7 6 5 9 9 C 1.47148 * 120.98141 * 186.72717 * 4 2 1 10 10 H 1.08995 * 109.68235 * 249.24841 * 9 4 2 11 11 C 1.50705 * 109.68358 * 9.76163 * 9 4 2 12 12 O 1.21282 * 119.99625 * 62.23922 * 11 9 4 13 13 N 1.34770 * 120.00178 * 242.24008 * 11 9 4 14 14 C 1.46498 * 120.00035 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.46972 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.49754 * 304.92851 * 15 14 13 17 17 C 1.53045 * 109.52243 * 184.85009 * 15 14 13 18 18 C 1.53036 * 109.53764 * 178.66603 * 17 15 14 19 19 C 1.52759 * 109.38315 * 61.24031 * 18 17 15 20 20 N 1.46925 * 109.01210 * 305.59053 * 19 18 17 21 21 C 1.36935 * 120.63072 * 233.58899 * 20 19 18 22 22 H 1.07999 * 120.00129 * 28.42460 * 21 20 19 23 23 C 1.38812 * 119.99493 * 208.43946 * 21 20 19 24 24 N 1.31622 * 119.99612 * 198.40751 * 23 21 20 25 25 Si 1.86796 * 120.00645 * 18.40405 * 23 21 20 26 26 H 1.48495 * 109.46981 * 270.00553 * 25 23 21 27 27 H 1.48504 * 109.46806 * 30.00245 * 25 23 21 28 28 H 1.48500 * 109.47495 * 150.00076 * 25 23 21 29 29 C 1.46925 * 118.73608 * 53.30527 * 20 19 18 30 30 H 1.09005 * 109.47222 * 185.69738 * 1 2 3 31 31 H 1.08997 * 109.47491 * 305.69446 * 1 2 3 32 32 H 1.08998 * 109.47266 * 65.69611 * 1 2 3 33 33 H 1.08994 * 109.67957 * 350.23930 * 5 4 2 34 34 H 1.09004 * 109.67800 * 110.75530 * 5 4 2 35 35 H 1.09005 * 109.50687 * 67.62284 * 6 5 4 36 36 H 1.08997 * 109.51452 * 187.72700 * 6 5 4 37 37 H 1.09003 * 109.51325 * 177.49409 * 8 7 6 38 38 H 1.08996 * 109.50926 * 57.34039 * 8 7 6 39 39 H 0.97005 * 119.99678 * 359.97438 * 13 11 9 40 40 H 1.08996 * 109.47145 * 59.99712 * 14 13 11 41 41 H 1.08998 * 109.47123 * 299.99789 * 14 13 11 42 42 H 1.08994 * 109.46223 * 298.68915 * 17 15 14 43 43 H 1.09009 * 109.45626 * 58.66087 * 17 15 14 44 44 H 1.09004 * 109.49667 * 181.31928 * 18 17 15 45 45 H 1.09003 * 109.49582 * 301.38407 * 18 17 15 46 46 H 1.08996 * 109.51282 * 185.70507 * 19 18 17 47 47 H 1.08998 * 109.43243 * 65.42485 * 19 18 17 48 48 H 0.97006 * 120.00063 * 354.89452 * 24 23 21 49 49 H 1.08998 * 109.58824 * 66.43503 * 29 20 19 50 50 H 1.09006 * 109.58596 * 186.86118 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4746 -2.4497 -0.1471 6 6 1.9344 -3.3869 0.9754 7 8 3.3627 -3.4459 0.9839 8 6 3.9987 -2.1949 1.2565 9 6 3.6446 -1.1967 0.1483 10 1 4.1020 -1.5112 -0.7897 11 6 4.1448 0.1749 0.5219 12 8 3.7921 0.6860 1.5638 13 7 4.9840 0.8337 -0.3016 14 6 5.4706 2.1668 0.0619 15 6 6.4010 2.6868 -1.0358 16 1 7.2001 1.9657 -1.2073 17 6 7.0048 4.0249 -0.6029 18 6 7.9611 4.5292 -1.6861 19 6 7.1870 4.7453 -2.9852 20 7 6.4804 3.5050 -3.3333 21 6 6.6395 2.9344 -4.5679 22 1 7.5613 3.0748 -5.1130 23 6 5.6159 2.1758 -5.1189 24 7 5.8722 1.3415 -6.1042 25 14 3.8748 2.3388 -4.4623 26 1 3.6681 1.3648 -3.3606 27 1 3.6660 3.7170 -3.9502 28 1 2.9062 2.0644 -5.5540 29 6 5.6048 2.8852 -2.3294 30 1 -0.3634 -1.0226 0.1020 31 1 -0.3634 0.5996 0.8346 32 1 -0.3634 0.4229 -0.9366 33 1 0.3994 -2.2874 -0.0725 34 1 1.7130 -2.8908 -1.1150 35 1 1.5800 -3.0079 1.9341 36 1 1.5290 -4.3844 0.8059 37 1 5.0792 -2.3351 1.2887 38 1 3.6518 -1.8117 2.2161 39 1 5.2663 0.4247 -1.1347 40 1 6.0164 2.1100 1.0036 41 1 4.6244 2.8447 0.1728 42 1 6.2069 4.7526 -0.4555 43 1 7.5517 3.8914 0.3306 44 1 8.4085 5.4705 -1.3669 45 1 8.7458 3.7908 -1.8511 46 1 7.8814 5.0066 -3.7836 47 1 6.4654 5.5505 -2.8476 48 1 6.7596 1.3102 -6.4948 49 1 4.7515 3.5357 -2.1372 50 1 5.2557 1.9196 -2.6953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023757521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:52 Heat of formation + Delta-G solvation = -79.360329 kcal Electronic energy + Delta-G solvation = -32015.615827 eV Core-core repulsion = 27851.097814 eV Total energy + Delta-G solvation = -4164.518013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08771 -38.92501 -38.43955 -37.83065 -35.02322 -34.65210 -33.11744 -32.37892 -30.91971 -30.42684 -30.03361 -27.88321 -26.05675 -24.96347 -24.48126 -22.58599 -22.25763 -20.96939 -20.65078 -19.46985 -19.08224 -17.70963 -17.35319 -17.09604 -16.76535 -16.17994 -15.78824 -15.44942 -15.22813 -15.12750 -14.85530 -14.63716 -14.16142 -13.87608 -13.76635 -13.57698 -13.45514 -13.37643 -13.19295 -12.73390 -12.51596 -12.37728 -12.23961 -12.08026 -11.97119 -11.78402 -11.71758 -11.29581 -11.21265 -10.70331 -10.57136 -10.52643 -10.32023 -9.97872 -9.78287 -9.72119 -9.53287 -9.46962 -9.10107 -8.86723 -8.65279 -8.51140 -7.03600 -6.24100 -3.32700 2.30834 2.55018 3.17314 3.20716 3.41066 3.55082 3.59653 3.69599 4.29158 4.41702 4.50594 4.55876 4.69783 4.72719 4.84494 4.86788 4.94930 5.04352 5.13351 5.24534 5.25788 5.30986 5.33417 5.37910 5.38486 5.51769 5.52782 5.64590 5.68870 5.87049 5.96639 6.04403 6.13131 6.19220 6.23934 6.34716 6.39853 6.61919 6.64002 6.67880 6.68339 6.73941 6.83475 7.01610 7.09984 7.78025 8.01942 8.01972 8.44946 8.53116 9.07241 9.61227 10.21905 11.14605 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.004017 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.460415 B = 6968.236906 C = 7801.545150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.501 6.501 4 N -0.611 5.611 5 C 0.069 3.931 6 C 0.044 3.956 7 O -0.373 6.373 8 C 0.065 3.935 9 C 0.089 3.911 10 H 0.097 0.903 11 C 0.539 3.461 12 O -0.537 6.537 13 N -0.717 5.717 14 C 0.134 3.866 15 C -0.118 4.118 16 H 0.076 0.924 17 C -0.100 4.100 18 C -0.134 4.134 19 C 0.145 3.855 20 N -0.606 5.606 21 C -0.340 4.340 22 H 0.066 0.934 23 C -0.017 4.017 24 N -0.925 5.925 25 Si 1.067 2.933 26 H -0.294 1.294 27 H -0.286 1.286 28 H -0.302 1.302 29 C 0.134 3.866 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.401 0.599 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.020 0.980 48 H 0.262 0.738 49 H 0.028 0.972 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.378 -8.446 15.456 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.374 6.374 4 N -0.350 5.350 5 C -0.053 4.053 6 C -0.033 4.033 7 O -0.291 6.291 8 C -0.013 4.013 9 C -0.018 4.018 10 H 0.115 0.885 11 C 0.324 3.676 12 O -0.414 6.414 13 N -0.369 5.369 14 C 0.010 3.990 15 C -0.139 4.139 16 H 0.094 0.906 17 C -0.138 4.138 18 C -0.173 4.173 19 C 0.019 3.981 20 N -0.330 5.330 21 C -0.469 4.469 22 H 0.084 0.916 23 C -0.218 4.218 24 N -0.565 5.565 25 Si 0.900 3.100 26 H -0.222 1.222 27 H -0.213 1.213 28 H -0.230 1.230 29 C 0.008 3.992 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.236 0.764 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.038 0.962 48 H 0.072 0.928 49 H 0.045 0.955 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.735 -8.208 15.981 20.433 hybrid contribution 1.496 0.574 -0.395 1.651 sum -8.238 -7.634 15.586 19.211 Atomic orbital electron populations 1.21974 0.91193 1.04288 1.05652 1.20928 0.90873 0.82943 0.75664 1.90798 1.68653 1.30480 1.47499 1.48099 1.05394 1.06794 1.74704 1.22644 0.98391 0.83738 1.00546 1.23034 0.81892 1.00635 0.97764 1.87998 1.18696 1.30173 1.92198 1.22833 0.99041 0.83163 0.96263 1.21890 0.82440 0.95936 1.01496 0.88506 1.19439 0.78196 0.85636 0.84326 1.90650 1.57002 1.67980 1.25792 1.45862 1.48523 1.18860 1.23644 1.21351 0.97506 0.82899 0.97225 1.21962 0.98382 0.97657 0.95917 0.90559 1.21333 0.98687 0.96156 0.97641 1.21916 0.98399 0.99961 0.97026 1.20863 0.94312 0.88623 0.94321 1.44342 1.53505 1.23586 1.11591 1.20273 1.00214 1.32136 0.94270 0.91626 1.26155 1.02879 0.95552 0.97200 1.70899 1.24875 1.32971 1.27726 0.83739 0.76069 0.76193 0.74004 1.22246 1.21253 1.23035 1.21392 0.92306 0.97498 0.87992 0.90109 0.88537 0.88431 0.87712 0.89829 0.92308 0.87274 0.87099 0.91151 0.76450 0.92113 0.91456 0.92292 0.92852 0.92706 0.92249 0.92459 0.96205 0.92756 0.95465 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.09 36.00 0.36 -1.20 16 2 C 0.51 7.31 7.48 -10.98 -0.08 7.23 16 3 O -0.50 -9.76 13.27 -18.34 -0.24 -10.01 16 4 N -0.61 -7.59 3.02 -166.06 -0.50 -8.09 16 5 C 0.07 0.54 6.57 -3.53 -0.02 0.52 16 6 C 0.04 0.32 6.98 37.31 0.26 0.58 16 7 O -0.37 -3.87 10.74 -35.23 -0.38 -4.25 16 8 C 0.07 0.73 6.24 37.31 0.23 0.96 16 9 C 0.09 1.21 3.50 -68.57 -0.24 0.97 16 10 H 0.10 1.24 7.93 -51.93 -0.41 0.83 16 11 C 0.54 9.10 4.24 -10.99 -0.05 9.05 16 12 O -0.54 -10.57 14.96 -18.34 -0.27 -10.84 16 13 N -0.72 -12.26 5.33 -60.29 -0.32 -12.58 16 14 C 0.13 2.31 5.07 -4.04 -0.02 2.29 16 15 C -0.12 -2.14 2.37 -90.50 -0.21 -2.36 16 16 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 17 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 18 C -0.13 -2.27 6.06 -26.84 -0.16 -2.43 16 19 C 0.14 3.00 6.49 -3.93 -0.03 2.97 16 20 N -0.61 -14.87 2.77 -172.59 -0.48 -15.35 16 21 C -0.34 -9.67 9.90 -15.06 -0.15 -9.82 16 22 H 0.07 1.98 8.06 -52.49 -0.42 1.56 16 23 C -0.02 -0.49 5.26 -17.43 -0.09 -0.59 16 24 N -0.92 -28.68 13.70 55.49 0.76 -27.92 16 25 Si 1.07 27.64 24.67 -169.99 -4.19 23.45 16 26 H -0.29 -7.24 6.52 56.52 0.37 -6.87 16 27 H -0.29 -7.33 6.69 56.52 0.38 -6.95 16 28 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 29 C 0.13 3.00 3.27 -3.71 -0.01 2.98 16 30 H 0.08 0.45 5.21 -51.93 -0.27 0.18 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.11 0.51 5.14 -51.93 -0.27 0.24 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 39 H 0.40 6.71 7.54 -40.82 -0.31 6.40 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 49 H 0.03 0.64 7.07 -51.93 -0.37 0.27 16 50 H 0.07 1.68 3.65 -51.93 -0.19 1.49 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -37.48 380.61 -8.43 -45.91 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.18 Total: 4.56 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -0.35 Total: 9.39 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -0.54 Total: -63.94 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.90 Total: -25.10 kcal Atomic # 14 Polarization: 27.64 SS G_CDS: -4.19 Total: 23.45 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.48 -8.43 -45.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023757521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.455 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds