Wall clock time and date at job start Tue Mar 31 2020 23:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99894 * 2 1 4 4 H 1.09004 * 110.91372 * 26.10382 * 3 2 1 5 5 C 1.55158 * 111.00629 * 149.99822 * 3 2 1 6 6 C 1.54323 * 102.94384 * 153.57649 * 5 3 2 7 7 H 1.09002 * 109.88393 * 218.39387 * 6 5 3 8 8 C 1.50697 * 109.87994 * 97.38444 * 6 5 3 9 9 O 1.21281 * 120.00060 * 260.31731 * 8 6 5 10 10 N 1.34776 * 120.00145 * 80.31696 * 8 6 5 11 11 C 1.46502 * 119.99763 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46650 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.88528 * 54.30069 * 12 11 10 14 14 C 1.55157 * 111.00159 * 178.17802 * 12 11 10 15 15 C 1.54329 * 102.94173 * 153.57965 * 14 12 11 16 16 N 1.47022 * 107.26665 * 337.80586 * 15 14 12 17 17 C 1.36940 * 125.64599 * 178.90505 * 16 15 14 18 18 H 1.08003 * 120.00185 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00009 * 0.03051 * 17 16 15 20 20 N 1.31624 * 119.99897 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00034 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46725 * 90.00111 * 21 19 17 23 23 H 1.48493 * 109.47198 * 209.99763 * 21 19 17 24 24 H 1.48497 * 109.47228 * 330.00123 * 21 19 17 25 25 C 1.47468 * 108.72791 * 358.97815 * 16 15 14 26 26 N 1.47021 * 107.27098 * 337.81243 * 6 5 3 27 27 C 1.34775 * 125.64869 * 178.91393 * 26 6 5 28 28 C 1.50704 * 120.00319 * 180.02562 * 27 26 6 29 29 O 1.21282 * 119.99959 * 0.02562 * 27 26 6 30 30 C 1.47425 * 108.70317 * 358.93805 * 26 6 5 31 31 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47106 * 299.99348 * 1 2 3 33 33 H 1.08997 * 109.47540 * 59.99880 * 1 2 3 34 34 H 1.09008 * 110.71704 * 35.21692 * 5 3 2 35 35 H 1.08993 * 110.87681 * 272.01558 * 5 3 2 36 36 H 0.96997 * 119.99773 * 359.97438 * 10 8 6 37 37 H 1.08993 * 109.47472 * 299.99683 * 11 10 8 38 38 H 1.08999 * 109.47246 * 60.00366 * 11 10 8 39 39 H 1.09003 * 110.72215 * 271.94088 * 14 12 11 40 40 H 1.09006 * 110.72181 * 35.04128 * 14 12 11 41 41 H 1.08993 * 109.88441 * 97.22375 * 15 14 12 42 42 H 1.09003 * 109.88084 * 218.23685 * 15 14 12 43 43 H 0.96990 * 119.99706 * 179.97438 * 20 19 17 44 44 H 1.08997 * 110.34579 * 265.25137 * 25 16 15 45 45 H 1.08998 * 110.40641 * 142.91408 * 25 16 15 46 46 H 1.09005 * 109.46734 * 59.99811 * 28 27 26 47 47 H 1.08998 * 109.47402 * 180.02562 * 28 27 26 48 48 H 1.08999 * 109.46740 * 300.00820 * 28 27 26 49 49 H 1.09000 * 110.36720 * 265.28712 * 30 26 6 50 50 H 1.09006 * 110.36747 * 142.96488 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3331 2.0328 0.4480 5 6 3.3823 1.3034 0.7243 6 6 4.1232 2.4856 0.0646 7 1 5.1747 2.2337 -0.0731 8 6 3.9995 3.7141 0.9285 9 8 3.1780 4.5647 0.6592 10 7 4.8018 3.8677 2.0005 11 6 4.6820 5.0623 2.8400 12 6 5.6995 4.9884 3.9802 13 1 6.7065 4.8334 3.5930 14 6 5.6344 6.2600 4.8669 15 6 6.1436 5.7550 6.2334 16 7 5.9455 4.2985 6.2618 17 6 6.2883 3.4664 7.2939 18 1 6.1009 2.4055 7.2175 19 6 6.8767 3.9864 8.4386 20 7 7.1056 5.2793 8.5317 21 14 7.3438 2.8515 9.8469 22 1 8.7342 2.3675 9.6522 23 1 7.2528 3.5922 11.1306 24 1 6.4159 1.6925 9.8772 25 6 5.3180 3.8812 4.9942 26 7 3.4907 2.7230 -1.2412 27 6 3.8365 3.6866 -2.1178 28 6 3.0985 3.8159 -3.4254 29 8 4.7416 4.4496 -1.8544 30 6 2.4153 1.7330 -1.4327 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 3.9119 0.3677 0.5444 35 1 3.2575 1.4748 1.7934 36 1 5.4586 3.1872 2.2162 37 1 4.8742 5.9503 2.2380 38 1 3.6754 5.1154 3.2548 39 1 6.2898 7.0377 4.4746 40 1 4.6098 6.6240 4.9446 41 1 7.2028 5.9872 6.3433 42 1 5.5760 6.2244 7.0370 43 1 7.5164 5.6427 9.3316 44 1 4.2352 3.8270 5.1071 45 1 5.7154 2.9187 4.6722 46 1 2.0428 4.0045 -3.2296 47 1 3.5158 4.6443 -3.9979 48 1 3.2030 2.8922 -3.9945 49 1 2.7851 0.8751 -1.9943 50 1 1.5683 2.1875 -1.9468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028716409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:16 Heat of formation + Delta-G solvation = -82.343324 kcal Electronic energy + Delta-G solvation = -30372.769184 eV Core-core repulsion = 26208.121819 eV Total energy + Delta-G solvation = -4164.647366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.02731 -39.04457 -38.61790 -37.59484 -36.39579 -34.61451 -32.64099 -32.09256 -30.20583 -29.73883 -29.10545 -28.06459 -26.91398 -25.59179 -24.28018 -23.28374 -22.08102 -20.87823 -20.06052 -19.95225 -19.23786 -17.92095 -17.52450 -16.89806 -16.57737 -16.25690 -15.72027 -15.49098 -15.37485 -15.11147 -14.89468 -14.68886 -14.52576 -13.92030 -13.69967 -13.45572 -13.37651 -13.18780 -13.05541 -12.92019 -12.49310 -12.37444 -12.32703 -12.14407 -11.99265 -11.81712 -11.68177 -11.37058 -11.26471 -10.90065 -10.79299 -10.40551 -10.30239 -10.15552 -10.04360 -9.98496 -9.88449 -9.80474 -9.65056 -8.94615 -8.91870 -8.59792 -6.83029 -5.71010 -3.04667 2.27150 2.49364 2.69780 3.18926 3.35881 3.39740 3.44501 3.46764 3.93257 4.05275 4.48716 4.49935 4.52781 4.65057 4.73894 4.84623 4.90616 4.96350 4.97063 5.05264 5.12346 5.14244 5.26556 5.27957 5.29858 5.42449 5.43804 5.46759 5.50284 5.55431 5.70537 5.82003 5.91425 6.06628 6.10548 6.35450 6.46754 6.50114 6.55994 6.66208 6.69997 6.92258 7.14246 7.54887 7.56354 7.64239 7.83399 7.92248 8.25629 8.26444 9.22274 9.82746 10.49000 11.40769 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.002475 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.608636 B =11310.368737 C =12673.898758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.076 3.924 4 H 0.086 0.914 5 C -0.119 4.119 6 C 0.120 3.880 7 H 0.103 0.897 8 C 0.509 3.491 9 O -0.532 6.532 10 N -0.721 5.721 11 C 0.135 3.865 12 C -0.118 4.118 13 H 0.080 0.920 14 C -0.135 4.135 15 C 0.178 3.822 16 N -0.606 5.606 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.143 3.857 26 N -0.601 5.601 27 C 0.533 3.467 28 C -0.166 4.166 29 O -0.531 6.531 30 C 0.085 3.915 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.402 0.598 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.018 0.982 45 H 0.035 0.965 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.030 -9.176 -23.438 27.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.289 6.289 3 C 0.017 3.983 4 H 0.104 0.896 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.121 0.879 8 C 0.293 3.707 9 O -0.408 6.408 10 N -0.372 5.372 11 C 0.011 3.989 12 C -0.138 4.138 13 H 0.098 0.902 14 C -0.174 4.174 15 C 0.053 3.947 16 N -0.333 5.333 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.017 3.983 26 N -0.338 5.338 27 C 0.323 3.677 28 C -0.226 4.226 29 O -0.406 6.406 30 C -0.038 4.038 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.236 0.764 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.054 0.946 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.106 0.894 49 H 0.102 0.898 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.915 -8.201 -23.335 27.454 hybrid contribution 0.354 -0.640 0.955 1.203 sum -11.561 -8.841 -22.380 26.696 Atomic orbital electron populations 1.22880 0.80384 1.03164 1.00415 1.87916 1.20235 1.26066 1.94722 1.23241 0.95150 0.85617 0.94334 0.89600 1.22725 0.94661 0.97477 1.00882 1.21494 0.99782 0.93466 0.84074 0.87912 1.20607 0.81226 0.87824 0.81087 1.90676 1.36165 1.43283 1.70666 1.46002 1.38785 1.24281 1.28148 1.21384 0.99752 0.86785 0.90931 1.22621 0.98246 0.98800 0.94092 0.90190 1.22858 1.00776 0.95724 0.98019 1.21137 0.99431 0.83545 0.90585 1.44492 1.71167 1.03531 1.14081 1.19051 1.33543 0.89826 0.93285 0.90484 1.24816 1.01263 0.96139 0.98312 1.69968 1.48516 1.10232 1.28226 0.86118 0.78312 0.79461 0.81860 1.21609 1.21683 1.20715 1.21569 0.95529 0.94676 0.86539 1.48103 1.35955 1.32808 1.16934 1.20482 0.83697 0.78388 0.85179 1.21880 1.01740 1.04746 0.94204 1.90759 1.30986 1.41269 1.77593 1.22738 0.90530 0.92275 0.98306 0.89206 0.93526 0.93791 0.87966 0.88513 0.76421 0.91703 0.91476 0.91985 0.92258 0.93563 0.93915 0.93749 0.96388 0.94630 0.89370 0.88798 0.89450 0.89819 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.85 101.05 1.10 1.25 16 2 O -0.37 -2.90 10.51 -35.23 -0.37 -3.27 16 3 C 0.08 0.60 3.54 -24.58 -0.09 0.51 16 4 H 0.09 0.74 7.83 -51.93 -0.41 0.34 16 5 C -0.12 -0.97 6.22 -24.90 -0.15 -1.13 16 6 C 0.12 1.26 3.29 -68.11 -0.22 1.04 16 7 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.51 7.19 6.20 -10.99 -0.07 7.13 16 9 O -0.53 -9.48 15.96 5.56 0.09 -9.39 16 10 N -0.72 -9.63 5.45 -60.29 -0.33 -9.96 16 11 C 0.14 2.06 5.12 -4.04 -0.02 2.03 16 12 C -0.12 -2.00 3.07 -88.47 -0.27 -2.27 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -2.52 6.42 -24.89 -0.16 -2.68 16 15 C 0.18 4.33 5.37 -3.06 -0.02 4.32 16 16 N -0.61 -15.42 3.40 -170.04 -0.58 -16.00 16 17 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 18 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.14 2.86 6.56 -2.51 -0.02 2.84 16 26 N -0.60 -6.22 2.80 -164.32 -0.46 -6.68 16 27 C 0.53 6.46 7.30 -10.98 -0.08 6.38 16 28 C -0.17 -1.20 9.33 36.01 0.34 -0.86 16 29 O -0.53 -8.95 16.70 5.56 0.09 -8.86 16 30 C 0.09 0.60 6.43 -2.53 -0.02 0.58 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.10 0.82 7.82 -51.93 -0.41 0.41 16 36 H 0.40 4.52 8.43 -40.82 -0.34 4.17 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.07 8.03 -51.93 -0.42 0.66 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.05 8.04 -51.93 -0.42 0.64 16 41 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 42 H 0.04 1.15 7.51 -51.93 -0.39 0.77 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.02 0.37 7.96 -51.93 -0.41 -0.04 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.51 7.85 -51.93 -0.41 0.11 16 47 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 48 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.45 7.48 -51.93 -0.39 0.06 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -36.87 403.57 -8.45 -45.32 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.59 Total: 0.10 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 0.07 Total: 12.26 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.79 Total: -59.31 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.19 Total: -21.52 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.87 -8.45 -45.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028716409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.022 kcal (2) G-P(sol) polarization free energy of solvation -36.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds