Wall clock time and date at job start Tue Mar 31 2020 23:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99894 * 2 1 4 4 H 1.09004 * 110.91372 * 26.10382 * 3 2 1 5 5 C 1.55158 * 111.00629 * 149.99822 * 3 2 1 6 6 C 1.54323 * 102.94384 * 153.57649 * 5 3 2 7 7 H 1.09002 * 109.88393 * 218.39387 * 6 5 3 8 8 C 1.50697 * 109.87994 * 97.38444 * 6 5 3 9 9 O 1.21281 * 120.00060 * 260.31731 * 8 6 5 10 10 N 1.34776 * 120.00145 * 80.31696 * 8 6 5 11 11 C 1.46502 * 119.99763 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46650 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.88528 * 54.30069 * 12 11 10 14 14 C 1.55157 * 111.00159 * 178.17802 * 12 11 10 15 15 C 1.54329 * 102.94173 * 153.57965 * 14 12 11 16 16 N 1.47022 * 107.26665 * 337.80586 * 15 14 12 17 17 C 1.36940 * 125.64599 * 178.90505 * 16 15 14 18 18 H 1.08003 * 120.00185 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00009 * 0.03051 * 17 16 15 20 20 N 1.31624 * 119.99897 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00034 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46725 * 90.00111 * 21 19 17 23 23 H 1.48493 * 109.47198 * 209.99763 * 21 19 17 24 24 H 1.48497 * 109.47228 * 330.00123 * 21 19 17 25 25 C 1.47468 * 108.72791 * 358.97815 * 16 15 14 26 26 N 1.47021 * 107.27098 * 337.81243 * 6 5 3 27 27 C 1.34775 * 125.64869 * 178.91393 * 26 6 5 28 28 C 1.50704 * 120.00319 * 180.02562 * 27 26 6 29 29 O 1.21282 * 119.99959 * 0.02562 * 27 26 6 30 30 C 1.47425 * 108.70317 * 358.93805 * 26 6 5 31 31 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47106 * 299.99348 * 1 2 3 33 33 H 1.08997 * 109.47540 * 59.99880 * 1 2 3 34 34 H 1.09008 * 110.71704 * 35.21692 * 5 3 2 35 35 H 1.08993 * 110.87681 * 272.01558 * 5 3 2 36 36 H 0.96997 * 119.99773 * 359.97438 * 10 8 6 37 37 H 1.08993 * 109.47472 * 299.99683 * 11 10 8 38 38 H 1.08999 * 109.47246 * 60.00366 * 11 10 8 39 39 H 1.09003 * 110.72215 * 271.94088 * 14 12 11 40 40 H 1.09006 * 110.72181 * 35.04128 * 14 12 11 41 41 H 1.08993 * 109.88441 * 97.22375 * 15 14 12 42 42 H 1.09003 * 109.88084 * 218.23685 * 15 14 12 43 43 H 0.96990 * 119.99706 * 179.97438 * 20 19 17 44 44 H 1.08997 * 110.34579 * 265.25137 * 25 16 15 45 45 H 1.08998 * 110.40641 * 142.91408 * 25 16 15 46 46 H 1.09005 * 109.46734 * 59.99811 * 28 27 26 47 47 H 1.08998 * 109.47402 * 180.02562 * 28 27 26 48 48 H 1.08999 * 109.46740 * 300.00820 * 28 27 26 49 49 H 1.09000 * 110.36720 * 265.28712 * 30 26 6 50 50 H 1.09006 * 110.36747 * 142.96488 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3331 2.0328 0.4480 5 6 3.3823 1.3034 0.7243 6 6 4.1232 2.4856 0.0646 7 1 5.1747 2.2337 -0.0731 8 6 3.9995 3.7141 0.9285 9 8 3.1780 4.5647 0.6592 10 7 4.8018 3.8677 2.0005 11 6 4.6820 5.0623 2.8400 12 6 5.6995 4.9884 3.9802 13 1 6.7065 4.8334 3.5930 14 6 5.6344 6.2600 4.8669 15 6 6.1436 5.7550 6.2334 16 7 5.9455 4.2985 6.2618 17 6 6.2883 3.4664 7.2939 18 1 6.1009 2.4055 7.2175 19 6 6.8767 3.9864 8.4386 20 7 7.1056 5.2793 8.5317 21 14 7.3438 2.8515 9.8469 22 1 8.7342 2.3675 9.6522 23 1 7.2528 3.5922 11.1306 24 1 6.4159 1.6925 9.8772 25 6 5.3180 3.8812 4.9942 26 7 3.4907 2.7230 -1.2412 27 6 3.8365 3.6866 -2.1178 28 6 3.0985 3.8159 -3.4254 29 8 4.7416 4.4496 -1.8544 30 6 2.4153 1.7330 -1.4327 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 3.9119 0.3677 0.5444 35 1 3.2575 1.4748 1.7934 36 1 5.4586 3.1872 2.2162 37 1 4.8742 5.9503 2.2380 38 1 3.6754 5.1154 3.2548 39 1 6.2898 7.0377 4.4746 40 1 4.6098 6.6240 4.9446 41 1 7.2028 5.9872 6.3433 42 1 5.5760 6.2244 7.0370 43 1 7.5164 5.6427 9.3316 44 1 4.2352 3.8270 5.1071 45 1 5.7154 2.9187 4.6722 46 1 2.0428 4.0045 -3.2296 47 1 3.5158 4.6443 -3.9979 48 1 3.2030 2.8922 -3.9945 49 1 2.7851 0.8751 -1.9943 50 1 1.5683 2.1875 -1.9468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028716409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:14 Heat of formation + Delta-G solvation = -109.732967 kcal Electronic energy + Delta-G solvation = -30373.956888 eV Core-core repulsion = 26208.121819 eV Total energy + Delta-G solvation = -4165.835070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.90069 -40.17809 -39.36284 -39.11450 -37.17903 -36.04606 -34.36192 -33.00742 -31.69538 -30.68381 -30.13530 -29.39766 -27.35688 -27.29033 -25.59861 -24.43626 -22.88157 -22.10722 -21.58818 -21.34997 -20.25170 -18.98793 -18.58753 -18.32205 -17.53430 -17.26487 -16.76302 -16.61225 -16.42439 -16.20745 -15.96372 -15.77565 -15.64465 -15.45060 -14.83271 -14.60863 -14.27868 -14.04259 -13.98233 -13.83820 -13.80252 -13.63187 -13.41667 -13.19371 -13.05795 -12.99536 -12.78989 -12.65708 -12.63530 -12.33608 -12.03015 -11.98646 -11.87995 -11.82661 -11.56125 -11.48714 -11.12304 -11.02031 -10.70643 -10.62023 -10.12635 -9.79596 -8.90177 -7.84725 -5.20525 1.39742 1.46233 1.48340 1.56924 1.58300 1.81725 2.22023 2.49896 2.73455 3.30665 3.33670 3.40300 3.58278 3.61978 3.82723 3.82957 3.99557 4.00180 4.01666 4.10066 4.25547 4.41248 4.44006 4.45173 4.57605 4.58242 4.59258 4.62971 4.66871 4.75501 4.78435 4.80308 4.87897 4.90033 4.92956 4.98792 5.03406 5.04512 5.12000 5.31866 5.44179 5.45929 5.65699 5.76813 6.15259 6.19799 6.35698 6.50189 7.06782 7.10115 7.18669 7.77926 8.42678 9.26095 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.002475 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.608636 B =11310.368737 C =12673.898758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.381 6.381 3 C 0.077 3.923 4 H 0.073 0.927 5 C -0.113 4.113 6 C 0.118 3.882 7 H 0.113 0.887 8 C 0.505 3.495 9 O -0.572 6.572 10 N -0.715 5.715 11 C 0.149 3.851 12 C -0.096 4.096 13 H 0.086 0.914 14 C -0.124 4.124 15 C 0.185 3.815 16 N -0.629 5.629 17 C -0.240 4.240 18 H 0.086 0.914 19 C -0.070 4.070 20 N -0.954 5.954 21 Si 0.980 3.020 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.267 1.267 25 C 0.141 3.859 26 N -0.602 5.602 27 C 0.520 3.480 28 C -0.159 4.159 29 O -0.591 6.591 30 C 0.086 3.914 31 H 0.102 0.898 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.413 0.587 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.012 0.988 42 H 0.005 0.995 43 H 0.246 0.754 44 H 0.021 0.979 45 H 0.052 0.948 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.119 0.881 49 H 0.105 0.895 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 -11.580 -25.446 30.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.299 6.299 3 C 0.018 3.982 4 H 0.092 0.908 5 C -0.151 4.151 6 C 0.011 3.989 7 H 0.131 0.869 8 C 0.291 3.709 9 O -0.451 6.451 10 N -0.367 5.367 11 C 0.024 3.976 12 C -0.116 4.116 13 H 0.105 0.895 14 C -0.163 4.163 15 C 0.060 3.940 16 N -0.355 5.355 17 C -0.369 4.369 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.603 5.603 21 Si 0.808 3.192 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.192 1.192 25 C 0.016 3.984 26 N -0.337 5.337 27 C 0.312 3.688 28 C -0.218 4.218 29 O -0.471 6.471 30 C -0.036 4.036 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.110 0.890 36 H 0.250 0.750 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.030 0.970 42 H 0.023 0.977 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.108 0.892 48 H 0.137 0.863 49 H 0.123 0.877 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.012 -10.680 -25.374 30.450 hybrid contribution 0.617 0.068 1.573 1.691 sum -12.395 -10.613 -23.801 28.857 Atomic orbital electron populations 1.23053 0.79206 1.04223 1.00973 1.87895 1.21535 1.25699 1.94810 1.23150 0.94699 0.85597 0.94752 0.90847 1.22728 0.94924 0.97071 1.00397 1.21590 1.00995 0.92374 0.83986 0.86903 1.21282 0.80247 0.88429 0.80973 1.90651 1.37861 1.44960 1.71645 1.45921 1.39015 1.23940 1.27853 1.21084 0.98607 0.87575 0.90299 1.22412 0.99078 0.96453 0.93620 0.89523 1.22724 1.01596 0.96911 0.95035 1.20886 0.96940 0.83534 0.92689 1.44820 1.71379 1.03827 1.15498 1.19497 1.32722 0.90661 0.94055 0.89605 1.25699 1.01949 0.97603 1.01039 1.70200 1.49628 1.12011 1.28496 0.85057 0.78155 0.77819 0.78186 1.21181 1.22361 1.19154 1.21734 0.95197 0.96368 0.85084 1.48265 1.36308 1.32813 1.16299 1.21413 0.83185 0.77642 0.86589 1.21914 1.01785 1.06261 0.91792 1.90723 1.33747 1.43574 1.79057 1.22941 0.90297 0.92240 0.98157 0.87940 0.93923 0.92338 0.86010 0.88989 0.75046 0.92065 0.92076 0.90009 0.91105 0.96994 0.97718 0.94488 0.96160 0.92938 0.87655 0.89248 0.86291 0.87739 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.85 113.37 1.23 1.41 16 2 O -0.38 -4.95 10.51 -148.98 -1.57 -6.52 16 3 C 0.08 1.04 3.54 31.99 0.11 1.15 16 4 H 0.07 1.17 7.83 -2.38 -0.02 1.15 16 5 C -0.11 -1.60 6.22 31.78 0.20 -1.41 16 6 C 0.12 2.32 3.29 44.59 0.15 2.47 16 7 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 8 C 0.50 13.88 6.20 87.66 0.54 14.42 16 9 O -0.57 -20.30 15.96 -3.03 -0.05 -20.35 16 10 N -0.72 -18.24 5.45 -463.06 -2.52 -20.76 16 11 C 0.15 4.35 5.12 86.38 0.44 4.80 16 12 C -0.10 -3.14 3.07 -9.40 -0.03 -3.17 16 13 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 14 C -0.12 -4.58 6.42 31.78 0.20 -4.38 16 15 C 0.18 9.28 5.37 86.73 0.47 9.74 16 16 N -0.63 -32.24 3.40 -691.88 -2.35 -34.59 16 17 C -0.24 -13.43 10.28 84.03 0.86 -12.56 16 18 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 19 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 20 N -0.95 -58.29 10.31 21.65 0.22 -58.07 16 21 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 C 0.14 5.48 6.56 86.85 0.57 6.05 16 26 N -0.60 -11.33 2.80 -792.19 -2.21 -13.54 16 27 C 0.52 12.00 7.30 87.66 0.64 12.64 16 28 C -0.16 -1.91 9.33 71.24 0.66 -1.25 16 29 O -0.59 -20.08 16.70 -3.03 -0.05 -20.13 16 30 C 0.09 0.95 6.43 86.85 0.56 1.51 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.04 0.39 8.12 -2.39 -0.02 0.37 16 33 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.09 1.40 7.82 -2.39 -0.02 1.38 16 36 H 0.41 8.56 8.43 -92.71 -0.78 7.78 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.90 8.03 -2.39 -0.02 1.88 16 39 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.07 2.46 8.04 -2.38 -0.02 2.45 16 41 H 0.01 0.67 7.38 -2.39 -0.02 0.65 16 42 H 0.00 0.26 7.51 -2.39 -0.02 0.24 16 43 H 0.25 14.63 8.31 -92.72 -0.77 13.86 16 44 H 0.02 0.80 7.96 -2.39 -0.02 0.78 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.10 0.92 7.85 -2.38 -0.02 0.90 16 47 H 0.09 1.17 8.12 -2.39 -0.02 1.16 16 48 H 0.12 0.66 8.14 -2.39 -0.02 0.65 16 49 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.10 0.74 7.48 -2.38 -0.02 0.72 16 Total: -1.00 -83.21 403.57 0.72 -82.49 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.15 Total: 15.74 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 7.08 Total: 27.86 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -6.86 Total: -126.96 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -1.67 Total: -47.00 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -83.21 0.72 -82.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028716409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.242 kcal (2) G-P(sol) polarization free energy of solvation -83.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds