Wall clock time and date at job start Tue Mar 31 2020 23:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99761 * 2 1 4 4 H 1.08996 * 110.91594 * 26.10828 * 3 2 1 5 5 C 1.55157 * 111.00176 * 150.00319 * 3 2 1 6 6 C 1.54328 * 102.94405 * 153.58076 * 5 3 2 7 7 H 1.08995 * 109.88567 * 218.23708 * 6 5 3 8 8 C 1.50696 * 109.88174 * 97.22334 * 6 5 3 9 9 O 1.21285 * 120.00160 * 259.99835 * 8 6 5 10 10 N 1.34769 * 120.00228 * 80.00557 * 8 6 5 11 11 C 1.46505 * 120.00071 * 359.97438 * 10 8 6 12 12 C 1.46505 * 120.00296 * 179.97438 * 10 8 6 13 13 H 1.08999 * 110.88332 * 3.87617 * 12 10 8 14 14 C 1.55157 * 111.00197 * 239.99955 * 12 10 8 15 15 C 1.54325 * 102.94184 * 206.42291 * 14 12 10 16 16 N 1.47022 * 107.26948 * 22.19107 * 15 14 12 17 17 C 1.36945 * 125.64832 * 181.02381 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47423 * 108.70390 * 1.29074 * 16 15 14 26 26 N 1.47025 * 107.26658 * 337.80910 * 6 5 3 27 27 C 1.34774 * 125.64777 * 178.92265 * 26 6 5 28 28 C 1.50701 * 120.00136 * 179.97438 * 27 26 6 29 29 O 1.21287 * 120.00068 * 359.97438 * 27 26 6 30 30 C 1.47423 * 108.70537 * 358.93748 * 26 6 5 31 31 H 1.09002 * 109.46735 * 299.98963 * 1 2 3 32 32 H 1.08995 * 109.47545 * 59.99173 * 1 2 3 33 33 H 1.09004 * 109.46873 * 179.97438 * 1 2 3 34 34 H 1.08997 * 110.72302 * 35.21843 * 5 3 2 35 35 H 1.09005 * 110.72050 * 271.93962 * 5 3 2 36 36 H 1.08994 * 109.47356 * 270.00404 * 11 10 8 37 37 H 1.09000 * 109.46414 * 30.00453 * 11 10 8 38 38 H 1.08996 * 109.47266 * 149.99782 * 11 10 8 39 39 H 1.09000 * 110.72140 * 88.06121 * 14 12 10 40 40 H 1.08998 * 110.72520 * 324.78440 * 14 12 10 41 41 H 1.09002 * 109.88274 * 262.77538 * 15 14 12 42 42 H 1.08996 * 109.88444 * 141.60894 * 15 14 12 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.09000 * 110.37068 * 94.48354 * 25 16 15 45 45 H 1.09005 * 110.36651 * 216.80519 * 25 16 15 46 46 H 1.08994 * 109.47072 * 59.99822 * 28 27 26 47 47 H 1.09002 * 109.47030 * 179.97438 * 28 27 26 48 48 H 1.09002 * 109.46870 * 299.99926 * 28 27 26 49 49 H 1.09003 * 110.36783 * 265.29325 * 30 26 6 50 50 H 1.08996 * 110.36932 * 142.96772 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0328 0.4480 5 6 3.3824 1.3033 0.7242 6 6 4.1232 2.4856 0.0646 7 1 5.1753 2.2349 -0.0707 8 6 3.9963 3.7151 0.9267 9 8 3.1783 4.5671 0.6513 10 7 4.7919 3.8679 2.0038 11 6 5.7798 2.8385 2.3368 12 6 4.6690 5.0634 2.8416 13 1 3.8478 5.6940 2.5008 14 6 6.0018 5.8570 2.8773 15 6 5.9297 6.5930 4.2318 16 7 4.9878 5.8507 5.0823 17 6 4.6287 6.1893 6.3597 18 1 3.9259 5.5756 6.9036 19 6 5.1678 7.3212 6.9553 20 7 6.0239 8.0694 6.2922 21 14 4.6774 7.7834 8.6975 22 1 5.3881 9.0238 9.0992 23 1 3.2112 8.0116 8.7550 24 1 5.0436 6.6818 9.6236 25 6 4.4989 4.6780 4.3346 26 7 3.4907 2.7231 -1.2412 27 6 3.8365 3.6867 -2.1178 28 6 3.0991 3.8153 -3.4258 29 8 4.7411 4.4503 -1.8541 30 6 2.4153 1.7331 -1.4327 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0277 -0.0005 34 1 3.9119 0.3678 0.5443 35 1 3.2547 1.4762 1.7928 36 1 5.3279 2.1030 3.0022 37 1 6.1130 2.3459 1.4234 38 1 6.6334 3.3009 2.8323 39 1 6.0488 6.5691 2.0534 40 1 6.8550 5.1792 2.8517 41 1 5.5704 7.6112 4.0817 42 1 6.9151 6.6103 4.6973 43 1 6.4004 8.8606 6.7083 44 1 5.0984 3.7993 4.5727 45 1 3.4486 4.4944 4.5612 46 1 2.0434 4.0033 -3.2307 47 1 3.5158 4.6443 -3.9978 48 1 3.2046 2.8915 -3.9947 49 1 2.7851 0.8751 -1.9943 50 1 1.5684 2.1875 -1.9467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033291805.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:26 Heat of formation + Delta-G solvation = -62.621435 kcal Electronic energy + Delta-G solvation = -31308.866402 eV Core-core repulsion = 27145.074241 eV Total energy + Delta-G solvation = -4163.792160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.03601 -39.18653 -38.55917 -37.29003 -36.25167 -34.81234 -32.41396 -31.81795 -29.96101 -29.37391 -28.84956 -27.43716 -26.87733 -26.58411 -24.62894 -23.80063 -22.11595 -21.00458 -20.08070 -19.49875 -18.66280 -17.83290 -17.27394 -16.96226 -16.86857 -16.05908 -15.82063 -15.36789 -15.24951 -15.02985 -14.78117 -14.54119 -14.05567 -13.95028 -13.55925 -13.37991 -13.16382 -13.11512 -12.85816 -12.73879 -12.45858 -12.35407 -12.29217 -12.24974 -12.08557 -12.00917 -11.70834 -11.63705 -11.22411 -10.93409 -10.80861 -10.72782 -10.26017 -10.22684 -10.11347 -9.93743 -9.83349 -9.72441 -9.66551 -8.81040 -8.60279 -8.30891 -6.82714 -5.69312 -3.03950 2.35430 2.59359 2.79258 3.16447 3.36468 3.42236 3.46194 3.47754 3.98511 4.10864 4.42406 4.52422 4.58116 4.64746 4.76892 4.88566 4.90418 5.00237 5.02097 5.10996 5.17469 5.23662 5.30267 5.34129 5.36601 5.43313 5.45048 5.50199 5.56561 5.58212 5.68375 5.72316 5.77666 5.88489 5.94914 6.24677 6.34039 6.54751 6.61812 6.69395 6.72855 6.98800 7.23459 7.56212 7.60553 7.64973 7.84304 8.01520 8.26192 8.35804 9.22678 9.82802 10.48217 11.42039 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.002833 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.953223 B = 9880.139784 C =10890.344158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.075 3.925 4 H 0.086 0.914 5 C -0.117 4.117 6 C 0.120 3.880 7 H 0.103 0.897 8 C 0.510 3.490 9 O -0.530 6.530 10 N -0.597 5.597 11 C 0.072 3.928 12 C 0.125 3.875 13 H 0.104 0.896 14 C -0.153 4.153 15 C 0.180 3.820 16 N -0.603 5.603 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.913 3.087 22 H -0.290 1.290 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.133 3.867 26 N -0.603 5.603 27 C 0.532 3.468 28 C -0.166 4.166 29 O -0.528 6.528 30 C 0.086 3.914 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.045 0.955 43 H 0.253 0.747 44 H 0.023 0.977 45 H 0.039 0.961 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 -19.059 -18.451 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.016 3.984 4 H 0.104 0.896 5 C -0.155 4.155 6 C 0.013 3.987 7 H 0.121 0.879 8 C 0.296 3.704 9 O -0.406 6.406 10 N -0.330 5.330 11 C -0.071 4.071 12 C 0.021 3.979 13 H 0.122 0.878 14 C -0.192 4.192 15 C 0.055 3.945 16 N -0.330 5.330 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.212 1.212 25 C 0.006 3.994 26 N -0.339 5.339 27 C 0.322 3.678 28 C -0.225 4.225 29 O -0.403 6.403 30 C -0.038 4.038 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.057 0.943 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.170 -18.088 -18.374 26.762 hybrid contribution -0.363 0.464 0.978 1.141 sum -7.533 -17.624 -17.397 25.884 Atomic orbital electron populations 1.22877 0.80407 1.03085 1.00473 1.87903 1.20220 1.26141 1.94746 1.23251 0.95154 0.85554 0.94421 0.89565 1.22698 0.94660 0.97346 1.00841 1.21555 0.99545 0.93583 0.84057 0.87896 1.20569 0.81100 0.87803 0.80968 1.90675 1.36291 1.43285 1.70327 1.47765 1.36317 1.21842 1.27091 1.21865 0.93040 0.91229 1.00942 1.22492 0.99555 0.85201 0.90612 0.87759 1.23235 0.96045 0.99243 1.00650 1.21143 0.94324 0.94089 0.84931 1.44383 1.50415 1.25409 1.12778 1.18999 1.21591 1.07174 0.88062 0.90459 1.24816 0.99315 0.97586 0.98632 1.69958 1.33223 1.17295 1.36378 0.86179 0.77854 0.77595 0.83993 1.21578 1.21145 1.21167 1.21769 0.97356 0.91352 0.88955 1.48127 1.35968 1.32838 1.17008 1.20479 0.83759 0.78404 0.85194 1.21876 1.01776 1.04664 0.94214 1.90773 1.30969 1.41037 1.77546 1.22720 0.90595 0.92267 0.98220 0.93521 0.93775 0.89252 0.88088 0.88680 0.92204 0.91535 0.90098 0.91893 0.92132 0.93329 0.93686 0.93643 0.95992 0.94255 0.89387 0.88801 0.89516 0.89893 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.85 101.05 1.10 1.26 16 2 O -0.37 -3.01 10.51 -35.23 -0.37 -3.38 16 3 C 0.08 0.64 3.54 -24.58 -0.09 0.56 16 4 H 0.09 0.83 7.83 -51.93 -0.41 0.43 16 5 C -0.12 -1.03 5.95 -24.89 -0.15 -1.18 16 6 C 0.12 1.42 2.51 -68.10 -0.17 1.24 16 7 H 0.10 1.11 6.39 -51.93 -0.33 0.78 16 8 C 0.51 8.30 6.05 -10.99 -0.07 8.23 16 9 O -0.53 -10.73 15.30 5.55 0.08 -10.64 16 10 N -0.60 -9.55 2.91 -171.35 -0.50 -10.05 16 11 C 0.07 0.86 8.64 59.85 0.52 1.38 16 12 C 0.13 2.46 3.47 -65.66 -0.23 2.24 16 13 H 0.10 2.33 7.02 -51.93 -0.36 1.97 16 14 C -0.15 -3.11 6.51 -24.90 -0.16 -3.27 16 15 C 0.18 4.54 5.37 -3.06 -0.02 4.52 16 16 N -0.60 -15.80 3.39 -169.94 -0.58 -16.38 16 17 C -0.23 -6.52 10.28 -15.06 -0.15 -6.68 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 21 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.13 2.83 6.79 -2.41 -0.02 2.82 16 26 N -0.60 -6.91 2.79 -164.32 -0.46 -7.37 16 27 C 0.53 7.09 7.29 -10.99 -0.08 7.01 16 28 C -0.17 -1.36 9.33 36.01 0.34 -1.03 16 29 O -0.53 -9.67 16.69 5.55 0.09 -9.58 16 30 C 0.09 0.67 6.43 -2.53 -0.02 0.65 16 31 H 0.05 0.27 8.12 -51.93 -0.42 -0.15 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 36 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.07 0.62 5.97 -51.93 -0.31 0.31 16 38 H 0.08 1.03 6.41 -51.93 -0.33 0.69 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.12 6.40 -51.93 -0.33 0.79 16 41 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 42 H 0.04 1.23 7.51 -51.93 -0.39 0.84 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.02 0.45 7.00 -51.93 -0.36 0.08 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 0.61 7.85 -51.93 -0.41 0.20 16 47 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.51 7.48 -51.93 -0.39 0.13 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -37.38 393.78 -7.72 -45.10 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.19 Total: -1.47 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 0.71 Total: 17.44 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.96 Total: -60.76 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.19 Total: -23.60 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.38 -7.72 -45.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033291805.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.517 kcal (2) G-P(sol) polarization free energy of solvation -37.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds