Wall clock time and date at job start Tue Mar 31 2020 23:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00085 * 2 1 4 4 N 1.34772 * 120.00274 * 179.97438 * 2 1 3 5 5 C 1.46931 * 120.62835 * 0.02783 * 4 2 1 6 6 C 1.53193 * 108.77073 * 233.58517 * 5 4 2 7 7 C 1.53046 * 109.31242 * 305.36014 * 6 5 4 8 8 C 1.53347 * 109.60522 * 61.37923 * 7 6 5 9 9 H 1.08998 * 109.47732 * 58.54950 * 8 7 6 10 10 C 1.50703 * 109.68301 * 178.74707 * 8 7 6 11 11 O 1.21280 * 120.00057 * 359.74901 * 10 8 7 12 12 N 1.34774 * 119.99899 * 179.75224 * 10 8 7 13 13 C 1.46499 * 119.99896 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46922 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.51677 * 59.89612 * 14 13 12 16 16 C 1.53294 * 109.51009 * 180.02562 * 14 13 12 17 17 N 1.47155 * 108.38405 * 172.22441 * 16 14 13 18 18 C 1.36939 * 120.97977 * 129.44156 * 17 16 14 19 19 H 1.08004 * 119.99562 * 206.23508 * 18 17 16 20 20 C 1.38805 * 120.00516 * 26.23379 * 18 17 16 21 21 N 1.31626 * 119.99771 * 16.92509 * 20 18 17 22 22 Si 1.86795 * 120.00390 * 196.92272 * 20 18 17 23 23 H 1.48504 * 109.47031 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47267 * 119.99630 * 22 20 18 25 25 H 1.48496 * 109.47364 * 240.00045 * 22 20 18 26 26 C 1.47154 * 118.03596 * 309.46246 * 17 16 14 27 27 C 1.53295 * 108.38324 * 50.53255 * 26 17 16 28 28 O 1.42959 * 109.22623 * 307.70044 * 27 26 17 29 29 C 1.46929 * 120.63493 * 179.97438 * 4 2 1 30 30 H 1.09006 * 109.47073 * 240.00138 * 1 2 3 31 31 H 1.09000 * 109.47117 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47377 * 120.00047 * 1 2 3 33 33 H 1.08994 * 109.58425 * 353.37012 * 5 4 2 34 34 H 1.09001 * 109.58862 * 113.65329 * 5 4 2 35 35 H 1.08997 * 109.50512 * 65.31627 * 6 5 4 36 36 H 1.09001 * 109.49365 * 185.41366 * 6 5 4 37 37 H 1.08996 * 109.45854 * 181.38874 * 7 6 5 38 38 H 1.08998 * 109.46227 * 301.36208 * 7 6 5 39 39 H 0.97005 * 120.00401 * 359.97438 * 12 10 8 40 40 H 1.09001 * 109.47332 * 299.99776 * 13 12 10 41 41 H 1.08994 * 109.47451 * 59.99983 * 13 12 10 42 42 H 1.09000 * 109.68241 * 291.94526 * 16 14 13 43 43 H 1.09004 * 109.68677 * 52.46155 * 16 14 13 44 44 H 0.97004 * 119.99823 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.67873 * 170.26008 * 26 17 16 46 46 H 1.09004 * 109.67835 * 290.80996 * 26 17 16 47 47 H 1.09001 * 109.50744 * 67.62622 * 27 26 17 48 48 H 1.08997 * 109.50859 * 187.72307 * 27 26 17 49 49 H 1.09000 * 109.58866 * 246.20410 * 29 4 2 50 50 H 1.09005 * 109.58157 * 6.48729 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4603 -2.4476 0.0005 6 6 1.9684 -3.2992 1.1681 7 6 3.4899 -3.4342 1.0716 8 6 4.1366 -2.0472 1.1683 9 1 3.8525 -1.5786 2.1105 10 6 5.6364 -2.1808 1.1044 11 8 6.1434 -3.2773 0.9970 12 7 6.4141 -1.0819 1.1667 13 6 7.8720 -1.2118 1.1039 14 6 8.5119 0.1750 1.1954 15 1 8.2281 0.6457 2.1366 16 6 10.0375 0.0402 1.1292 17 7 10.6186 1.3885 1.0298 18 6 11.6248 1.7860 1.8694 19 1 11.7575 2.8338 2.0950 20 6 12.4740 0.8423 2.4306 21 7 12.5414 -0.3689 1.9197 22 14 13.5213 1.2911 3.9108 23 1 13.2625 2.7033 4.2904 24 1 13.1764 0.4020 5.0492 25 1 14.9571 1.1248 3.5701 26 6 10.0864 2.2971 0.0020 27 6 8.5584 2.3218 0.1230 28 8 8.0628 0.9810 0.1033 29 6 3.6501 -1.1833 0.0000 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8899 33 1 0.3921 -2.2657 0.1186 34 1 1.6405 -2.9683 -0.9400 35 1 1.7048 -2.8191 2.1105 36 1 1.5119 -4.2880 1.1228 37 1 3.8513 -4.0602 1.8874 38 1 3.7541 -3.8917 0.1183 39 1 6.0086 -0.2048 1.2523 40 1 8.2181 -1.8267 1.9348 41 1 8.1547 -1.6814 0.1619 42 1 10.4021 -0.4511 2.0313 43 1 10.3167 -0.5460 0.2536 44 1 13.1346 -1.0285 2.3122 45 1 10.4833 3.3001 0.1576 46 1 10.3705 1.9387 -0.9875 47 1 8.2752 2.8010 1.0602 48 1 8.1360 2.8792 -0.7130 49 1 4.0106 -1.6023 -0.9395 50 1 4.0267 -0.1669 0.1152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035437321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:09 Heat of formation + Delta-G solvation = -98.823691 kcal Electronic energy + Delta-G solvation = -30500.787877 eV Core-core repulsion = 26335.425869 eV Total energy + Delta-G solvation = -4165.362008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.74908 -39.54435 -38.46986 -37.28785 -34.84137 -34.31034 -33.38926 -32.11937 -31.31327 -30.76906 -29.83032 -27.39771 -25.91307 -25.29277 -24.06958 -23.26709 -22.03814 -21.37752 -20.24534 -19.49520 -19.36186 -17.63403 -17.02717 -16.77416 -16.42785 -16.02706 -15.77947 -15.60513 -15.19353 -15.03979 -14.49234 -14.35406 -14.14544 -13.99568 -13.83894 -13.60294 -13.57569 -13.24775 -13.06259 -12.97137 -12.79135 -12.65290 -12.49907 -12.20748 -11.77217 -11.54120 -11.34634 -11.28648 -11.11709 -10.95322 -10.85818 -10.72203 -10.41552 -10.25593 -10.19143 -10.03965 -9.75491 -9.63381 -9.07838 -9.02720 -8.86010 -8.56345 -6.76801 -5.85798 -3.29383 2.29054 2.50660 2.78744 3.27390 3.33793 3.41242 3.43259 4.14618 4.24769 4.35725 4.43026 4.48019 4.51644 4.62305 4.81036 4.82353 4.93272 4.95815 5.06625 5.17533 5.21345 5.33047 5.34843 5.41669 5.46164 5.51875 5.55776 5.61912 5.63827 5.83726 5.87170 5.94743 6.00606 6.02515 6.07984 6.12501 6.24858 6.36471 6.50747 6.65169 6.78295 7.03150 7.06153 7.46537 7.62950 7.70286 7.83880 7.84647 8.30269 8.32201 9.09580 9.72582 10.29631 11.22319 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.002461 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.150275 B =11373.634871 C =12359.805776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.542 6.542 4 N -0.613 5.613 5 C 0.104 3.896 6 C -0.135 4.135 7 C -0.100 4.100 8 C -0.121 4.121 9 H 0.099 0.901 10 C 0.516 3.484 11 O -0.541 6.541 12 N -0.717 5.717 13 C 0.132 3.868 14 C 0.055 3.945 15 H 0.055 0.945 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.255 4.255 19 H 0.069 0.931 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.109 3.891 27 C 0.050 3.950 28 O -0.389 6.389 29 C 0.120 3.880 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.403 0.597 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.031 0.969 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.043 0.957 48 H 0.082 0.918 49 H 0.075 0.925 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.221 -4.425 -2.699 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.418 6.418 4 N -0.348 5.348 5 C -0.019 4.019 6 C -0.174 4.174 7 C -0.138 4.138 8 C -0.143 4.143 9 H 0.117 0.883 10 C 0.301 3.699 11 O -0.418 6.418 12 N -0.368 5.368 13 C 0.008 3.992 14 C -0.005 4.005 15 H 0.073 0.927 16 C 0.026 3.974 17 N -0.319 5.319 18 C -0.384 4.384 19 H 0.087 0.913 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.216 1.216 26 C -0.017 4.017 27 C -0.028 4.028 28 O -0.309 6.309 29 C -0.003 4.003 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.238 0.762 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.045 0.955 47 H 0.061 0.939 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.504 -4.819 -2.869 26.113 hybrid contribution 0.679 0.617 0.999 1.356 sum -24.825 -4.203 -1.869 25.248 Atomic orbital electron populations 1.21942 0.91696 1.05531 1.04072 1.20857 0.90690 0.82966 0.75517 1.90754 1.70678 1.30943 1.49460 1.48139 1.06611 1.06240 1.73774 1.21838 0.96703 0.83975 0.99353 1.21957 0.96368 1.00414 0.98620 1.21387 0.93582 0.94764 1.04075 1.21762 0.92458 0.99019 1.01100 0.88270 1.20309 0.88525 0.84509 0.76557 1.90708 1.75493 1.26174 1.49431 1.46052 1.07643 1.09384 1.73710 1.21436 0.78109 0.96523 1.03108 1.23149 0.98428 0.89558 0.89359 0.92656 1.21303 0.85896 0.87534 1.02649 1.44060 1.40259 1.11354 1.36179 1.19231 1.06110 0.93092 1.19987 0.91301 1.25062 0.97489 0.96794 1.00348 1.70034 1.39830 1.04670 1.40068 0.86191 0.79867 0.77904 0.82628 1.20227 1.21443 1.21599 1.21607 0.91990 0.95365 0.92770 1.23003 0.96187 0.83153 1.00426 1.87777 1.71815 1.23136 1.48154 1.21520 0.79583 1.01702 0.97476 0.89349 0.88940 0.89381 0.89392 0.90911 0.91287 0.90035 0.90535 0.90773 0.76242 0.89987 0.90683 0.88612 0.95073 0.93461 0.91967 0.95542 0.93854 0.89961 0.90709 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 8.67 36.00 0.31 -0.58 16 2 C 0.51 4.97 7.81 -10.99 -0.09 4.88 16 3 O -0.54 -7.84 16.50 5.55 0.09 -7.75 16 4 N -0.61 -5.15 2.97 -172.74 -0.51 -5.66 16 5 C 0.10 0.53 6.34 -3.71 -0.02 0.51 16 6 C -0.14 -0.74 6.08 -26.61 -0.16 -0.90 16 7 C -0.10 -0.87 4.48 -26.53 -0.12 -0.99 16 8 C -0.12 -1.23 2.69 -91.47 -0.25 -1.47 16 9 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 10 C 0.52 7.22 7.16 -10.98 -0.08 7.14 16 11 O -0.54 -9.47 16.00 5.56 0.09 -9.38 16 12 N -0.72 -10.27 5.36 -60.29 -0.32 -10.60 16 13 C 0.13 2.25 5.37 -4.04 -0.02 2.23 16 14 C 0.05 1.04 2.86 -26.58 -0.08 0.97 16 15 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.15 3.62 4.73 -3.53 -0.02 3.61 16 17 N -0.59 -14.95 3.05 -171.82 -0.52 -15.47 16 18 C -0.26 -6.95 9.65 -15.06 -0.15 -7.09 16 19 H 0.07 1.84 7.88 -52.48 -0.41 1.42 16 20 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 21 N -0.90 -25.98 11.14 55.49 0.62 -25.36 16 22 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.11 2.30 6.74 -3.53 -0.02 2.28 16 27 C 0.05 0.90 6.98 37.31 0.26 1.16 16 28 O -0.39 -7.38 10.14 -35.23 -0.36 -7.73 16 29 C 0.12 1.22 5.56 -3.69 -0.02 1.20 16 30 H 0.09 0.28 7.69 -51.93 -0.40 -0.12 16 31 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.09 0.28 7.94 -51.93 -0.41 -0.13 16 33 H 0.09 0.24 5.93 -51.93 -0.31 -0.07 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 38 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 39 H 0.40 5.26 7.89 -40.82 -0.32 4.94 16 40 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.10 2.49 6.14 -51.93 -0.32 2.18 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.10 1.18 6.60 -51.93 -0.34 0.84 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -34.45 394.52 -8.94 -43.38 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.40 Total: 3.24 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: -0.53 Total: 12.91 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.74 Total: -57.09 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.18 Total: -24.86 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.45 -8.94 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035437321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.441 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds