Wall clock time and date at job start Tue Mar 31 2020 23:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.47193 * 119.79161 * 2 1 4 4 C 1.52984 * 108.66425 * 108.03597 * 3 2 1 5 5 C 1.51773 * 110.88200 * 86.47452 * 4 3 2 6 6 C 1.51797 * 113.81006 * 292.99070 * 5 4 3 7 7 C 1.53065 * 110.73983 * 66.80810 * 6 5 4 8 8 H 1.09004 * 109.63351 * 155.18502 * 7 6 5 9 9 C 1.50701 * 109.63394 * 34.78883 * 7 6 5 10 10 O 1.21279 * 120.00057 * 32.94034 * 9 7 6 11 11 N 1.34775 * 119.99767 * 212.94545 * 9 7 6 12 12 C 1.46502 * 119.99415 * 179.72710 * 11 9 7 13 13 C 1.53005 * 109.46991 * 180.27390 * 12 11 9 14 14 H 1.08997 * 109.51086 * 59.99138 * 13 12 11 15 15 C 1.53292 * 109.51568 * 180.10121 * 13 12 11 16 16 N 1.47144 * 108.38593 * 172.22507 * 15 13 12 17 17 C 1.36941 * 120.98516 * 129.44334 * 16 15 13 18 18 H 1.08007 * 120.00025 * 209.96713 * 17 16 15 19 19 C 1.38808 * 120.00092 * 29.95964 * 17 16 15 20 20 N 1.31629 * 119.99650 * 9.94531 * 19 17 16 21 21 Si 1.86797 * 120.00484 * 189.93775 * 19 17 16 22 22 H 1.48500 * 109.46869 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47033 * 120.00037 * 21 19 17 24 24 H 1.48500 * 109.47503 * 240.00302 * 21 19 17 25 25 C 1.47155 * 118.03926 * 309.46300 * 16 15 13 26 26 C 1.53297 * 108.38314 * 50.53375 * 25 16 15 27 27 O 1.42963 * 109.50888 * 299.89681 * 13 12 11 28 28 C 1.33377 * 119.78592 * 179.97438 * 2 1 3 29 29 O 1.21283 * 119.89066 * 0.29043 * 28 2 1 30 30 H 1.09002 * 109.46806 * 90.00053 * 1 2 3 31 31 H 1.08999 * 109.47178 * 210.00042 * 1 2 3 32 32 H 1.08998 * 109.47361 * 330.00499 * 1 2 3 33 33 H 1.09000 * 109.59860 * 348.28212 * 3 2 1 34 34 H 1.09007 * 109.74198 * 227.87592 * 3 2 1 35 35 H 1.08994 * 109.20134 * 326.10633 * 4 3 2 36 36 H 1.09008 * 109.15165 * 206.80446 * 4 3 2 37 37 H 1.08998 * 108.61661 * 171.87446 * 5 4 3 38 38 H 1.09003 * 108.61881 * 54.11384 * 5 4 3 39 39 H 1.09004 * 109.22264 * 306.48703 * 6 5 4 40 40 H 1.09002 * 109.19121 * 187.11073 * 6 5 4 41 41 H 0.96995 * 120.00166 * 359.97438 * 11 9 7 42 42 H 1.09001 * 109.47286 * 300.27021 * 12 11 9 43 43 H 1.08995 * 109.47517 * 60.27626 * 12 11 9 44 44 H 1.09004 * 109.67577 * 291.94645 * 15 13 12 45 45 H 1.08997 * 109.68026 * 52.46245 * 15 13 12 46 46 H 0.96999 * 119.99967 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.68561 * 170.25559 * 25 16 15 48 48 H 1.09000 * 109.67976 * 290.81331 * 25 16 15 49 49 H 1.09003 * 109.51486 * 67.62380 * 26 25 16 50 50 H 1.08998 * 109.51201 * 187.72628 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1963 1.2774 0.0000 4 6 2.8290 1.4793 1.3782 5 6 4.1871 0.8061 1.4538 6 6 4.1247 -0.7090 1.3843 7 6 3.6417 -1.1690 0.0067 8 1 4.0041 -2.1780 -0.1904 9 6 4.1597 -0.2293 -1.0514 10 8 5.2400 0.3043 -0.9123 11 7 3.4226 0.0184 -2.1521 12 6 3.9236 0.9366 -3.1778 13 6 2.8992 1.0457 -4.3091 14 1 1.9572 1.4239 -3.9120 15 6 3.4236 2.0043 -5.3842 16 7 2.5145 1.9477 -6.5398 17 6 2.0059 3.0924 -7.0934 18 1 1.0359 3.0779 -7.5681 19 6 2.7370 4.2713 -7.0444 20 7 3.9914 4.2516 -6.6459 21 14 1.9411 5.8856 -7.5442 22 1 0.5339 5.6390 -7.9494 23 1 1.9673 6.8268 -6.3958 24 1 2.6889 6.4743 -8.6840 25 6 2.1674 0.6248 -7.0828 26 6 1.7043 -0.2667 -5.9250 27 8 2.6892 -0.2441 -4.8890 28 6 2.1275 -1.1576 0.0005 29 8 1.5152 -2.2045 -0.0043 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.5054 2.0942 -0.2085 34 1 2.9764 1.2550 -0.7610 35 1 2.1749 1.0533 2.1388 36 1 2.9473 2.5468 1.5644 37 1 4.6655 1.0920 2.3906 38 1 4.8010 1.1673 0.6288 39 1 3.4369 -1.0753 2.1465 40 1 5.1179 -1.1175 1.5712 41 1 2.5588 -0.4085 -2.2635 42 1 4.0846 1.9206 -2.7374 43 1 4.8652 0.5582 -3.5757 44 1 3.4516 3.0196 -4.9885 45 1 4.4252 1.7014 -5.6891 46 1 4.5025 5.0754 -6.6120 47 1 1.3637 0.7265 -7.8120 48 1 3.0424 0.1826 -7.5593 49 1 0.7575 0.1064 -5.5343 50 1 1.5736 -1.2883 -6.2819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035573759.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:43 Heat of formation + Delta-G solvation = -90.447166 kcal Electronic energy + Delta-G solvation = -32174.950340 eV Core-core repulsion = 28009.951565 eV Total energy + Delta-G solvation = -4164.998775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.70401 -40.40945 -39.89985 -37.50453 -36.63592 -36.12131 -35.32544 -33.28828 -32.97860 -32.12658 -29.58345 -28.95316 -27.41011 -26.52654 -25.13784 -24.91746 -23.47652 -22.45797 -21.63196 -21.13825 -20.29890 -18.98909 -18.89900 -17.90270 -17.51421 -17.27777 -17.10383 -16.84083 -16.31443 -16.24402 -16.05849 -15.55745 -15.34995 -15.06159 -15.03133 -14.85915 -14.75716 -14.55349 -14.37147 -14.08655 -13.70896 -13.57355 -13.47563 -13.19938 -12.95458 -12.90103 -12.76107 -12.71914 -12.51037 -12.18567 -12.06161 -11.97847 -11.89154 -11.82052 -11.52497 -11.32048 -11.13045 -10.82205 -10.63384 -10.58585 -10.08042 -9.75819 -8.70353 -7.90576 -5.43965 1.35571 1.38657 1.46455 1.48657 1.58668 1.89961 1.95180 2.47308 2.77067 3.18410 3.25422 3.46589 3.50592 3.70050 3.83776 3.97102 4.04889 4.05785 4.10799 4.25495 4.27675 4.40928 4.43334 4.47031 4.49553 4.57556 4.61941 4.65971 4.66963 4.76581 4.81856 4.91445 4.94682 4.95084 4.98878 5.06112 5.14802 5.17530 5.22118 5.23888 5.40023 5.55439 5.56642 5.60146 6.19908 6.25798 6.29203 6.34295 6.92644 7.01219 7.07272 7.73248 8.28667 9.14872 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.003331 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.634489 B = 8404.610184 C = 8790.839760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.597 5.597 3 C 0.072 3.928 4 C -0.131 4.131 5 C -0.155 4.155 6 C -0.087 4.087 7 C -0.123 4.123 8 H 0.141 0.859 9 C 0.531 3.469 10 O -0.547 6.547 11 N -0.714 5.714 12 C 0.142 3.858 13 C 0.074 3.926 14 H 0.062 0.938 15 C 0.162 3.838 16 N -0.614 5.614 17 C -0.268 4.268 18 H 0.071 0.929 19 C -0.044 4.044 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.294 1.294 25 C 0.103 3.897 26 C 0.057 3.943 27 O -0.394 6.394 28 C 0.518 3.482 29 O -0.574 6.574 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.406 0.594 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.000 1.000 46 H 0.252 0.748 47 H 0.071 0.929 48 H 0.015 0.985 49 H 0.052 0.948 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -7.274 17.264 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.328 5.328 3 C -0.050 4.050 4 C -0.169 4.169 5 C -0.192 4.192 6 C -0.125 4.125 7 C -0.147 4.147 8 H 0.158 0.842 9 C 0.319 3.681 10 O -0.426 6.426 11 N -0.366 5.366 12 C 0.018 3.982 13 C 0.014 3.986 14 H 0.080 0.920 15 C 0.036 3.964 16 N -0.339 5.339 17 C -0.397 4.397 18 H 0.089 0.911 19 C -0.240 4.240 20 N -0.581 5.581 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.213 1.213 24 H -0.221 1.221 25 C -0.022 4.022 26 C -0.021 4.021 27 O -0.313 6.313 28 C 0.305 3.695 29 O -0.455 6.455 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.242 0.758 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.018 0.982 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.033 0.967 49 H 0.070 0.930 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.813 -7.437 17.381 19.508 hybrid contribution -0.445 0.930 -0.936 1.393 sum -5.258 -6.507 16.444 18.450 Atomic orbital electron populations 1.21874 0.77767 1.04110 1.02690 1.47815 1.08049 1.06074 1.70909 1.22671 0.98072 0.84881 0.99419 1.21725 0.96572 1.02366 0.96224 1.21621 0.98335 0.94437 1.04858 1.21092 1.02973 0.97078 0.91382 1.22004 0.92512 1.02557 0.97657 0.84159 1.20149 0.84319 0.81350 0.82252 1.90653 1.22152 1.51727 1.78056 1.46216 1.22978 1.47203 1.20214 1.21207 0.96486 0.94122 0.86402 1.22827 0.97801 0.84941 0.92991 0.91984 1.21083 0.90733 0.98018 0.86580 1.44293 1.55389 1.01606 1.32578 1.19560 0.99203 0.87744 1.33238 0.91137 1.25918 0.95410 1.02125 1.00560 1.70130 1.08465 1.27096 1.52371 0.85156 0.78212 0.79539 0.77216 1.18973 1.21284 1.22078 1.21796 0.98264 0.86346 0.95790 1.23059 0.90263 1.00948 0.87784 1.87798 1.61143 1.29345 1.53017 1.20193 0.89654 0.83592 0.76087 1.90724 1.70200 1.32574 1.51966 0.92204 0.91232 0.88373 0.87505 0.89726 0.90796 0.89126 0.90186 0.90120 0.90083 0.89066 0.75814 0.89317 0.91968 0.90963 0.98232 0.93840 0.91022 0.96710 0.92990 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.35 127.77 1.32 2.55 16 2 N -0.60 -11.39 2.50 -846.09 -2.12 -13.51 16 3 C 0.07 1.25 5.57 86.24 0.48 1.73 16 4 C -0.13 -1.95 5.73 30.19 0.17 -1.78 16 5 C -0.16 -2.73 5.15 29.80 0.15 -2.58 16 6 C -0.09 -1.53 5.24 30.22 0.16 -1.37 16 7 C -0.12 -2.66 3.10 -12.04 -0.04 -2.70 16 8 H 0.14 2.86 8.14 -2.39 -0.02 2.85 16 9 C 0.53 13.76 4.20 87.66 0.37 14.13 16 10 O -0.55 -16.88 13.95 -3.03 -0.04 -16.92 16 11 N -0.71 -19.00 3.58 -463.06 -1.66 -20.66 16 12 C 0.14 4.47 5.16 86.38 0.45 4.92 16 13 C 0.07 2.65 2.86 30.69 0.09 2.74 16 14 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 15 C 0.16 7.55 4.68 86.35 0.40 7.96 16 16 N -0.61 -30.00 3.04 -697.56 -2.12 -32.12 16 17 C -0.27 -14.14 9.65 84.03 0.81 -13.33 16 18 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 19 C -0.04 -2.38 5.09 84.86 0.43 -1.94 16 20 N -0.94 -53.30 10.99 21.65 0.24 -53.06 16 21 Si 0.97 42.89 29.57 68.60 2.03 44.92 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 25 C 0.10 4.16 6.74 86.35 0.58 4.74 16 26 C 0.06 1.85 6.98 72.08 0.50 2.36 16 27 O -0.39 -13.96 10.14 -148.98 -1.51 -15.47 16 28 C 0.52 12.14 5.14 88.10 0.45 12.59 16 29 O -0.57 -17.20 16.60 -3.04 -0.05 -17.25 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.24 7.38 -2.39 -0.02 1.23 16 32 H 0.10 1.03 8.03 -2.39 -0.02 1.01 16 33 H 0.11 1.51 7.92 -2.39 -0.02 1.49 16 34 H 0.09 1.85 3.24 -2.38 -0.01 1.84 16 35 H 0.07 1.01 8.05 -2.39 -0.02 0.99 16 36 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.88 4.71 -2.40 -0.01 1.87 16 39 H 0.08 1.28 7.86 -2.38 -0.02 1.26 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.41 10.59 6.86 -92.71 -0.64 9.95 16 42 H 0.09 2.73 8.11 -2.39 -0.02 2.71 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 44 H 0.07 3.71 6.20 -2.38 -0.01 3.70 16 45 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 47 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 48 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -67.66 379.37 1.42 -66.24 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.31 Total: 27.82 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 6.34 Total: 30.01 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -5.66 Total: -119.34 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -1.60 Total: -49.64 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -67.66 1.42 -66.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035573759.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.210 kcal (2) G-P(sol) polarization free energy of solvation -67.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds