Wall clock time and date at job start Tue Mar 31 2020 23:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 119.99974 * 2 1 4 4 N 1.34780 * 119.99777 * 180.02562 * 2 1 3 5 5 C 1.46927 * 120.62999 * 353.70486 * 4 2 1 6 6 C 1.53189 * 108.77506 * 233.58672 * 5 4 2 7 7 C 1.53039 * 109.31633 * 305.36480 * 6 5 4 8 8 C 1.53037 * 109.53482 * 61.36513 * 7 6 5 9 9 C 1.46926 * 120.63039 * 173.42840 * 4 2 1 10 10 H 1.08996 * 109.58468 * 246.19564 * 9 4 2 11 11 C 1.52991 * 109.58497 * 6.62577 * 9 4 2 12 12 C 1.50706 * 109.47250 * 287.87451 * 11 9 4 13 13 O 1.21275 * 119.99795 * 0.02562 * 12 11 9 14 14 N 1.34779 * 120.00273 * 180.02562 * 12 11 9 15 15 C 1.46497 * 119.99804 * 180.02562 * 14 12 11 16 16 H 1.09001 * 110.88575 * 31.12579 * 15 14 12 17 17 C 1.54905 * 111.00309 * 267.19483 * 15 14 12 18 18 N 1.47432 * 104.83250 * 204.91794 * 17 15 14 19 19 C 1.36937 * 125.64898 * 204.17792 * 18 17 15 20 20 H 1.07995 * 120.00440 * 359.97267 * 19 18 17 21 21 C 1.38815 * 119.99688 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00199 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99818 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47333 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47504 * 119.99719 * 23 21 19 26 26 H 1.48500 * 109.47077 * 239.99872 * 23 21 19 27 27 C 1.47027 * 108.69884 * 24.13015 * 18 17 15 28 28 C 1.54318 * 107.27420 * 358.94289 * 27 18 17 29 29 H 1.09002 * 110.72406 * 96.16484 * 28 27 18 30 30 O 1.42897 * 110.87232 * 219.37059 * 28 27 18 31 31 H 1.08996 * 109.46999 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47436 * 239.99941 * 1 2 3 33 33 H 1.09002 * 109.47447 * 119.99749 * 1 2 3 34 34 H 1.09007 * 109.59019 * 353.37515 * 5 4 2 35 35 H 1.09003 * 109.58724 * 113.65998 * 5 4 2 36 36 H 1.09003 * 109.49890 * 65.31991 * 6 5 4 37 37 H 1.09004 * 109.50013 * 185.41305 * 6 5 4 38 38 H 1.08996 * 109.46057 * 181.38415 * 7 6 5 39 39 H 1.09005 * 109.45796 * 301.36175 * 7 6 5 40 40 H 1.08995 * 109.50175 * 58.58770 * 8 7 6 41 41 H 1.08998 * 109.50058 * 178.65252 * 8 7 6 42 42 H 1.09000 * 109.47549 * 47.87904 * 11 9 4 43 43 H 1.09007 * 109.47062 * 167.87759 * 11 9 4 44 44 H 0.97003 * 119.99330 * 0.02562 * 14 12 11 45 45 H 1.08995 * 110.37032 * 323.75597 * 17 15 14 46 46 H 1.08999 * 110.36628 * 86.08610 * 17 15 14 47 47 H 0.97001 * 120.00444 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.88373 * 239.51808 * 27 18 17 49 49 H 1.09009 * 109.87738 * 118.36064 * 27 18 17 50 50 H 0.96702 * 114.00159 * 293.60720 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4668 -2.4439 0.1375 6 6 2.0860 -3.2324 1.2958 7 6 3.5916 -3.3765 1.0623 8 6 4.2381 -1.9899 1.0218 9 6 3.6428 -1.1876 -0.1452 10 1 3.9099 -1.6597 -1.0906 11 6 4.1813 0.2441 -0.1133 12 6 3.8202 0.9453 -1.3975 13 8 3.1935 0.3579 -2.2537 14 7 4.1938 2.2253 -1.5946 15 6 3.8423 2.9070 -2.8427 16 1 2.8988 2.5309 -3.2385 17 6 4.9774 2.7716 -3.8880 18 7 4.8080 3.9320 -4.7816 19 6 5.2414 4.0108 -6.0782 20 1 5.7572 3.1749 -6.5269 21 6 5.0177 5.1653 -6.8157 22 7 4.3887 6.1840 -6.2690 23 14 5.6082 5.2727 -8.5846 24 1 6.2813 4.0032 -8.9597 25 1 4.4468 5.5013 -9.4812 26 1 6.5666 6.3990 -8.7190 27 6 4.0957 4.9900 -4.0502 28 6 3.7871 4.4444 -2.6401 29 1 4.5459 4.7668 -1.9271 30 8 2.4865 4.8513 -2.2102 31 1 -0.3633 1.0276 0.0005 32 1 -0.3634 -0.5138 0.8900 33 1 -0.3634 -0.5138 -0.8900 34 1 0.4142 -2.2531 0.3469 35 1 1.5579 -3.0153 -0.7862 36 1 1.9121 -2.7012 2.2316 37 1 1.6298 -4.2210 1.3479 38 1 4.0307 -3.9583 1.8727 39 1 3.7650 -3.8856 0.1142 40 1 4.0440 -1.4704 1.9601 41 1 5.3138 -2.0940 0.8794 42 1 3.7419 0.7790 0.7286 43 1 5.2656 0.2222 -0.0038 44 1 4.6954 2.6949 -0.9099 45 1 5.9505 2.8088 -3.3984 46 1 4.8688 1.8427 -4.4479 47 1 4.2320 6.9906 -6.7844 48 1 3.1665 5.2351 -4.5646 49 1 4.7252 5.8768 -3.9750 50 1 2.3991 5.8039 -2.0690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077825757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:09 Heat of formation + Delta-G solvation = -74.086499 kcal Electronic energy + Delta-G solvation = -31478.182490 eV Core-core repulsion = 27313.893167 eV Total energy + Delta-G solvation = -4164.289323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.97213 -38.95328 -37.52450 -37.42928 -34.91561 -33.71170 -33.47447 -32.88238 -31.55315 -29.55397 -28.75858 -27.78082 -26.64434 -24.99265 -24.20986 -22.69378 -21.36324 -20.48514 -20.19942 -19.79932 -19.11066 -17.13670 -17.06770 -16.75779 -16.34953 -16.23131 -15.54665 -15.36489 -14.84612 -14.73150 -14.50366 -14.14533 -13.95866 -13.83658 -13.68607 -13.34792 -13.09864 -12.73613 -12.63155 -12.55126 -12.52201 -12.32101 -12.22122 -11.90920 -11.76189 -11.42016 -11.28300 -11.19698 -11.11514 -11.03275 -10.95460 -10.79844 -10.75413 -10.06898 -9.77831 -9.72352 -9.49139 -9.20489 -8.94443 -8.68627 -8.62851 -8.36669 -6.82744 -5.69354 -3.03457 2.49527 2.88649 3.42469 3.47802 3.50110 3.50800 3.70321 4.31136 4.42222 4.49944 4.53927 4.68277 4.75067 4.80174 4.93378 4.98869 5.13317 5.19312 5.20609 5.28636 5.34305 5.39981 5.48826 5.50685 5.52501 5.59241 5.64239 5.69303 5.70718 5.76217 5.79918 5.84010 5.88741 5.98291 6.11128 6.27032 6.32275 6.51391 6.70477 6.82750 7.17736 7.35163 7.43388 7.56103 7.80068 8.10781 8.21419 8.25129 8.28579 8.87587 9.22348 9.82596 10.47044 11.42394 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.002687 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.837013 B =10418.731262 C =10930.291557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.524 3.476 3 O -0.532 6.532 4 N -0.603 5.603 5 C 0.108 3.892 6 C -0.135 4.135 7 C -0.120 4.120 8 C -0.131 4.131 9 C 0.163 3.837 10 H 0.082 0.918 11 C -0.139 4.139 12 C 0.552 3.448 13 O -0.564 6.564 14 N -0.714 5.714 15 C 0.146 3.854 16 H 0.099 0.901 17 C 0.130 3.870 18 N -0.601 5.601 19 C -0.225 4.225 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.924 5.924 23 Si 0.914 3.086 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.154 3.846 28 C 0.069 3.931 29 H 0.054 0.946 30 O -0.560 6.560 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.392 0.608 45 H 0.022 0.978 46 H 0.047 0.953 47 H 0.252 0.748 48 H 0.059 0.941 49 H 0.047 0.953 50 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 -17.328 20.673 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.314 3.686 3 O -0.411 6.411 4 N -0.336 5.336 5 C -0.015 4.015 6 C -0.173 4.173 7 C -0.157 4.157 8 C -0.170 4.170 9 C 0.060 3.940 10 H 0.100 0.900 11 C -0.179 4.179 12 C 0.340 3.660 13 O -0.444 6.444 14 N -0.363 5.363 15 C 0.040 3.960 16 H 0.117 0.883 17 C 0.003 3.997 18 N -0.329 5.329 19 C -0.353 4.353 20 H 0.098 0.902 21 C -0.206 4.206 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.029 3.971 28 C 0.009 3.991 29 H 0.072 0.928 30 O -0.364 6.364 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.225 0.775 45 H 0.039 0.961 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.763 -17.685 19.835 26.997 hybrid contribution 0.609 0.947 -0.594 1.273 sum -4.153 -16.737 19.241 25.838 Atomic orbital electron populations 1.21959 0.92347 1.05452 1.03512 1.20633 0.90407 0.82989 0.74558 1.90614 1.68818 1.31982 1.49654 1.47933 1.06996 1.06063 1.72651 1.21732 0.96439 0.84615 0.98752 1.21924 0.96330 1.00381 0.98651 1.21506 0.95120 0.96845 1.02273 1.22081 1.00252 0.95871 0.98761 1.21085 0.79122 0.95400 0.98415 0.90015 1.22165 1.00758 0.95338 0.99611 1.19861 0.77546 0.81665 0.86890 1.90635 1.41351 1.66043 1.46392 1.45683 1.58035 1.13094 1.19524 1.22070 0.99748 0.90096 0.84056 0.88278 1.21860 0.94511 0.92195 0.91184 1.44270 1.67216 1.11386 1.09990 1.19142 1.30362 0.99744 0.86077 0.90170 1.24818 1.00805 0.96311 0.98647 1.69948 1.46424 1.05093 1.35715 0.85997 0.77838 0.77395 0.84272 1.20454 1.21715 1.21772 1.21802 0.97813 0.91153 0.86375 1.23443 0.83913 0.94329 0.97445 0.92836 1.86513 1.31951 1.28000 1.89937 0.89019 0.89977 0.89451 0.89651 0.91200 0.91495 0.90680 0.91580 0.91541 0.91380 0.90584 0.86271 0.90643 0.77498 0.96062 0.93474 0.93784 0.92275 0.93516 0.78114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 8.75 36.01 0.31 -1.35 16 2 C 0.52 6.90 6.72 -10.98 -0.07 6.83 16 3 O -0.53 -8.84 10.73 -14.66 -0.16 -9.00 16 4 N -0.60 -6.55 2.87 -164.97 -0.47 -7.02 16 5 C 0.11 0.78 6.32 -3.71 -0.02 0.76 16 6 C -0.13 -0.75 6.08 -26.61 -0.16 -0.91 16 7 C -0.12 -0.73 5.88 -26.69 -0.16 -0.89 16 8 C -0.13 -1.00 5.37 -26.39 -0.14 -1.14 16 9 C 0.16 1.81 2.47 -67.38 -0.17 1.64 16 10 H 0.08 1.04 7.70 -51.93 -0.40 0.64 16 11 C -0.14 -1.76 4.70 -27.88 -0.13 -1.89 16 12 C 0.55 9.64 4.96 -10.98 -0.05 9.58 16 13 O -0.56 -11.85 14.30 -14.66 -0.21 -12.06 16 14 N -0.71 -12.55 5.20 -51.73 -0.27 -12.82 16 15 C 0.15 3.10 3.15 -65.78 -0.21 2.89 16 16 H 0.10 2.46 7.54 -51.93 -0.39 2.07 16 17 C 0.13 3.00 6.93 -2.53 -0.02 2.99 16 18 N -0.60 -16.26 3.40 -170.07 -0.58 -16.84 16 19 C -0.23 -6.55 10.28 -15.06 -0.15 -6.70 16 20 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -27.71 10.31 55.49 0.57 -27.13 16 23 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.15 3.90 5.15 -3.06 -0.02 3.89 16 28 C 0.07 1.42 3.97 -24.90 -0.10 1.32 16 29 H 0.05 0.99 8.00 -51.93 -0.42 0.57 16 30 O -0.56 -11.01 13.40 -35.23 -0.47 -11.48 16 31 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 32 H 0.08 0.53 7.43 -51.93 -0.39 0.14 16 33 H 0.09 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.09 0.47 5.97 -51.92 -0.31 0.16 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.12 1.57 6.06 -51.95 -0.31 1.25 16 43 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 44 H 0.39 5.83 8.57 -40.82 -0.35 5.48 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.06 1.68 7.30 -51.93 -0.38 1.30 16 49 H 0.05 1.26 7.51 -51.92 -0.39 0.87 16 50 H 0.37 5.66 9.12 45.56 0.42 6.07 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -37.28 386.27 -9.51 -46.79 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.54 Total: 9.42 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: -1.18 Total: 16.62 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.75 Total: -63.81 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.84 Total: -32.54 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.28 -9.51 -46.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077825757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.300 kcal (2) G-P(sol) polarization free energy of solvation -37.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds