Wall clock time and date at job start Tue Mar 31 2020 23:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 120.00035 * 2 1 4 4 N 1.34773 * 120.00083 * 179.71962 * 2 1 3 5 5 C 1.46503 * 120.00194 * 180.27744 * 4 2 1 6 6 C 1.53003 * 109.47075 * 275.00143 * 5 4 2 7 7 C 1.53000 * 109.47014 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47221 * 60.00063 * 7 6 5 9 9 C 1.50697 * 109.47363 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99945 * 120.00089 * 9 8 7 11 11 N 1.34775 * 120.00507 * 300.00709 * 9 8 7 12 12 C 1.46494 * 120.00458 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.88315 * 34.29780 * 12 11 9 14 14 C 1.54901 * 111.00621 * 270.41828 * 12 11 9 15 15 N 1.47467 * 104.81450 * 204.95064 * 14 12 11 16 16 C 1.36931 * 125.63411 * 204.05065 * 15 14 12 17 17 H 1.08002 * 120.00152 * 354.79871 * 16 15 14 18 18 C 1.38810 * 120.00333 * 174.80635 * 16 15 14 19 19 N 1.31621 * 120.00136 * 7.04627 * 18 16 15 20 20 Si 1.86803 * 120.00118 * 187.05235 * 18 16 15 21 21 H 1.48495 * 109.47255 * 94.98334 * 20 18 16 22 22 H 1.48494 * 109.47196 * 214.98603 * 20 18 16 23 23 H 1.48506 * 109.46959 * 334.98381 * 20 18 16 24 24 C 1.47029 * 108.72262 * 24.06618 * 15 14 12 25 25 C 1.54329 * 107.26836 * 358.97658 * 24 15 14 26 26 H 1.09001 * 110.72138 * 219.43989 * 25 24 15 27 27 O 1.42900 * 110.71872 * 96.17053 * 25 24 15 28 28 C 1.53005 * 109.47269 * 300.00228 * 8 7 6 29 29 C 1.53000 * 109.47185 * 59.99750 * 28 8 7 30 30 H 1.09006 * 109.47087 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46808 * 119.99953 * 1 2 3 32 32 H 1.08997 * 109.47332 * 240.00065 * 1 2 3 33 33 H 0.96999 * 119.99942 * 0.28126 * 4 2 1 34 34 H 1.09001 * 109.46619 * 35.00309 * 5 4 2 35 35 H 1.09000 * 109.47406 * 300.00144 * 6 5 4 36 36 H 1.09004 * 109.46860 * 60.00089 * 6 5 4 37 37 H 1.09001 * 109.46752 * 300.00210 * 7 6 5 38 38 H 1.08997 * 109.46993 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.46762 * 59.99997 * 8 7 6 40 40 H 0.97001 * 119.99442 * 359.97438 * 11 9 8 41 41 H 1.09000 * 110.36550 * 323.75253 * 14 12 11 42 42 H 1.09000 * 110.37310 * 86.07513 * 14 12 11 43 43 H 0.97001 * 119.99746 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.88205 * 239.56278 * 24 15 14 45 45 H 1.08997 * 109.88286 * 118.39113 * 24 15 14 46 46 H 0.96702 * 114.00339 * 66.47435 * 27 25 24 47 47 H 1.09000 * 109.47041 * 299.99599 * 28 8 7 48 48 H 1.09004 * 109.47055 * 179.97438 * 28 8 7 49 49 H 1.08997 * 109.47187 * 180.02562 * 29 28 8 50 50 H 1.09000 * 109.47255 * 59.99980 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0057 5 6 3.6459 -1.1671 0.0119 6 6 4.1619 -1.0449 -1.4233 7 6 5.6919 -1.0443 -1.4168 8 6 6.1999 -2.3498 -0.8017 9 6 7.7068 -2.3495 -0.7959 10 8 8.3092 -2.4381 0.2531 11 7 8.3853 -2.2507 -1.9562 12 6 9.8502 -2.2498 -1.9505 13 1 10.2360 -2.8923 -1.1590 14 6 10.4041 -0.8095 -1.8159 15 7 11.7483 -0.8645 -2.4197 16 6 12.7835 -0.0126 -2.1410 17 1 12.6261 0.8332 -1.4880 18 6 14.0353 -0.2358 -2.6978 19 7 14.1953 -1.1808 -3.5999 20 14 15.4929 0.8048 -2.1667 21 1 16.2372 0.1019 -1.0911 22 1 16.3921 1.0263 -3.3275 23 1 15.0080 2.1135 -1.6593 24 6 11.7931 -1.9849 -3.3706 25 6 10.4120 -2.6727 -3.3336 26 1 10.5189 -3.7559 -3.3917 27 8 9.5776 -2.1883 -4.3877 28 6 5.6838 -2.4721 0.6335 29 6 4.1538 -2.4727 0.6270 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 -0.3634 -0.5138 0.8900 33 1 1.6959 -2.0072 0.0057 34 1 4.0067 -0.3239 0.6008 35 1 3.8011 -1.8882 -2.0123 36 1 3.8004 -0.1146 -1.8614 37 1 6.0523 -0.2008 -0.8280 38 1 6.0595 -0.9568 -2.4392 39 1 5.8393 -3.1933 -1.3905 40 1 7.9035 -2.1801 -2.7952 41 1 9.7724 -0.1077 -2.3605 42 1 10.4705 -0.5251 -0.7657 43 1 15.0702 -1.3371 -3.9886 44 1 12.5675 -2.6923 -3.0738 45 1 11.9943 -1.6113 -4.3745 46 1 9.8851 -2.4256 -5.2733 47 1 6.0443 -1.6287 1.2223 48 1 6.0453 -3.4025 1.0716 49 1 3.7862 -2.5594 1.6494 50 1 3.7933 -3.3162 0.0382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084121421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:26 Heat of formation + Delta-G solvation = -114.220311 kcal Electronic energy + Delta-G solvation = -30190.239334 eV Core-core repulsion = 26024.209678 eV Total energy + Delta-G solvation = -4166.029655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.53518 -39.73839 -38.31997 -37.36398 -34.84248 -34.42049 -33.94135 -31.77550 -31.04229 -30.99017 -29.09135 -28.28891 -26.94670 -24.58302 -23.38615 -22.99171 -20.93139 -20.81024 -20.45347 -20.05295 -19.59700 -17.51974 -17.23866 -16.92459 -16.71581 -16.58778 -15.67396 -15.40000 -15.02950 -14.83541 -14.47875 -14.28367 -14.09377 -14.01050 -13.65665 -13.32378 -13.16376 -13.06208 -12.86330 -12.68956 -12.57575 -12.50314 -12.39623 -12.15376 -11.70517 -11.51521 -11.40086 -11.28672 -10.93033 -10.85072 -10.77610 -10.56300 -10.50729 -10.41496 -10.16755 -10.10436 -9.82147 -9.51948 -9.35721 -9.28535 -8.66301 -8.60156 -6.86223 -5.75464 -3.06936 2.32684 2.82806 2.87184 3.38069 3.41874 3.46839 3.48767 4.32821 4.39397 4.44959 4.50428 4.55069 4.71373 4.82122 4.86486 4.89135 4.96219 5.08220 5.12318 5.18609 5.21723 5.30331 5.38349 5.39062 5.46943 5.51451 5.58870 5.72849 5.75507 5.78947 5.88037 5.91002 5.93559 6.06238 6.10097 6.14224 6.22416 6.23613 6.64667 6.69320 6.96448 7.16378 7.33448 7.44659 7.73879 7.85862 7.91056 8.06711 8.20587 8.51225 9.18540 9.78874 10.43857 11.37259 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020357 B = 0.002147 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.099577 B =13041.345449 C =13372.137739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.543 6.543 4 N -0.729 5.729 5 C 0.140 3.860 6 C -0.124 4.124 7 C -0.109 4.109 8 C -0.106 4.106 9 C 0.512 3.488 10 O -0.543 6.543 11 N -0.707 5.707 12 C 0.139 3.861 13 H 0.102 0.898 14 C 0.132 3.868 15 N -0.601 5.601 16 C -0.224 4.224 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.925 5.925 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.154 3.846 25 C 0.068 3.932 26 H 0.060 0.940 27 O -0.567 6.567 28 C -0.095 4.095 29 C -0.124 4.124 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.406 0.594 41 H 0.025 0.975 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.379 0.621 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.432 -7.328 2.790 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.295 3.705 3 O -0.420 6.420 4 N -0.380 5.380 5 C 0.036 3.964 6 C -0.163 4.163 7 C -0.147 4.147 8 C -0.127 4.127 9 C 0.298 3.702 10 O -0.421 6.421 11 N -0.358 5.358 12 C 0.033 3.967 13 H 0.120 0.880 14 C 0.005 3.995 15 N -0.328 5.328 16 C -0.352 4.352 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.573 5.573 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.028 3.972 25 C 0.008 3.992 26 H 0.078 0.922 27 O -0.374 6.374 28 C -0.134 4.134 29 C -0.162 4.162 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.241 0.759 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.227 0.773 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.666 -6.344 3.989 27.699 hybrid contribution 0.770 -0.155 -0.785 1.110 sum -25.896 -6.499 3.204 26.891 Atomic orbital electron populations 1.21928 0.91812 1.05565 1.04145 1.20839 0.90593 0.83627 0.75482 1.90756 1.70828 1.31392 1.49035 1.46159 1.07395 1.08651 1.75834 1.21081 0.78934 0.99369 0.97027 1.21887 0.95334 1.02680 0.96414 1.21496 0.94976 0.96570 1.01703 1.21360 0.92083 1.00127 0.99130 1.20586 0.89650 0.76100 0.83893 1.90706 1.70524 1.49670 1.31159 1.45808 1.07217 1.73695 1.09127 1.22321 0.78717 0.99554 0.96127 0.87981 1.21839 0.87612 0.93105 0.96991 1.44297 1.07888 1.34056 1.46530 1.19096 0.87250 1.04539 1.24312 0.90263 1.24813 0.97574 0.99038 0.99083 1.69929 1.22449 1.34723 1.30195 0.86070 0.82536 0.79411 0.77632 1.21561 1.21789 1.20578 1.21867 0.90119 0.90016 0.95173 1.23504 0.92847 0.96427 0.86445 0.92199 1.86247 1.53084 1.80649 1.17387 1.21279 0.93076 1.04043 0.94974 1.21820 0.96561 0.96512 1.01287 0.89010 0.89451 0.89472 0.76683 0.89205 0.91576 0.91073 0.90854 0.90698 0.88663 0.75866 0.95717 0.93758 0.93745 0.92547 0.93119 0.77324 0.90669 0.90532 0.91005 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.32 36.01 0.37 -0.38 16 2 C 0.51 4.31 7.90 -10.99 -0.09 4.23 16 3 O -0.54 -7.43 16.75 5.55 0.09 -7.34 16 4 N -0.73 -4.63 5.08 -53.80 -0.27 -4.90 16 5 C 0.14 1.14 2.45 -67.93 -0.17 0.97 16 6 C -0.12 -1.05 5.49 -26.73 -0.15 -1.20 16 7 C -0.11 -1.07 5.10 -26.73 -0.14 -1.21 16 8 C -0.11 -1.08 2.52 -91.77 -0.23 -1.31 16 9 C 0.51 7.58 7.15 -10.99 -0.08 7.50 16 10 O -0.54 -10.23 15.68 5.55 0.09 -10.14 16 11 N -0.71 -10.63 5.07 -51.74 -0.26 -10.89 16 12 C 0.14 2.58 3.25 -65.79 -0.21 2.37 16 13 H 0.10 2.04 7.63 -51.93 -0.40 1.64 16 14 C 0.13 2.94 6.92 -2.51 -0.02 2.93 16 15 N -0.60 -15.65 3.40 -170.04 -0.58 -16.23 16 16 C -0.22 -6.38 10.26 -15.06 -0.15 -6.54 16 17 H 0.08 2.22 7.84 -52.49 -0.41 1.80 16 18 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 19 N -0.93 -26.95 10.36 55.49 0.57 -26.38 16 20 Si 0.91 22.44 29.56 -169.99 -5.02 17.41 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.15 3.62 5.15 -3.06 -0.02 3.60 16 25 C 0.07 1.21 4.20 -24.89 -0.10 1.11 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 O -0.57 -8.91 12.13 -35.23 -0.43 -9.33 16 28 C -0.10 -0.92 4.49 -26.73 -0.12 -1.04 16 29 C -0.12 -0.84 5.39 -26.73 -0.14 -0.98 16 30 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.40 1.27 8.60 -40.82 -0.35 0.92 16 34 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.41 5.37 6.99 -40.82 -0.29 5.08 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.06 1.46 7.30 -51.93 -0.38 1.08 16 45 H 0.05 1.30 7.54 -51.93 -0.39 0.91 16 46 H 0.38 4.59 9.12 45.56 0.42 5.01 16 47 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 48 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -36.22 397.79 -8.79 -45.01 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.63 Total: 7.10 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -1.34 Total: 9.70 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.54 Total: -58.41 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.25 Total: -26.81 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.22 -8.79 -45.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084121421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.211 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds