Wall clock time and date at job start Tue Mar 31 2020 23:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46837 * 2 1 4 4 C 1.42902 * 114.00039 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46973 * 180.02562 * 5 4 3 7 7 O 1.21275 * 120.00418 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99815 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99831 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.54912 * 36.91155 * 9 8 6 11 11 C 1.54837 * 110.61450 * 159.95174 * 9 8 6 12 12 C 1.55861 * 103.51301 * 117.40329 * 11 9 8 13 13 H 1.09004 * 115.89632 * 159.82644 * 12 11 9 14 14 C 1.55859 * 105.72306 * 289.26378 * 12 11 9 15 15 C 1.54833 * 103.51497 * 71.48844 * 14 12 11 16 16 C 1.55849 * 103.52147 * 0.02562 * 15 14 12 17 17 H 1.09008 * 115.58173 * 159.64402 * 16 15 14 18 18 N 1.50645 * 101.73507 * 33.22588 * 16 15 14 19 19 C 1.46904 * 111.00183 * 189.56857 * 18 16 15 20 20 C 1.50703 * 109.46759 * 169.99870 * 19 18 16 21 21 O 1.21296 * 120.00070 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99538 * 179.97438 * 20 19 18 23 23 C 1.37101 * 119.99752 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99756 * 0.02562 * 23 22 20 25 25 C 1.38944 * 119.99837 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00304 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99756 * 180.02562 * 25 23 22 28 28 H 1.48491 * 109.47358 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47183 * 119.99768 * 27 25 23 30 30 H 1.48507 * 109.46785 * 239.99465 * 27 25 23 31 31 H 1.08998 * 109.46834 * 299.99881 * 1 2 3 32 32 H 1.08992 * 109.47231 * 60.00252 * 1 2 3 33 33 H 1.09000 * 109.46667 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46834 * 240.00119 * 2 1 3 35 35 H 1.08999 * 109.47374 * 119.99383 * 2 1 3 36 36 H 1.08998 * 109.46895 * 60.00036 * 4 3 2 37 37 H 1.08993 * 109.47229 * 299.99776 * 4 3 2 38 38 H 1.09006 * 109.46686 * 60.00159 * 5 4 3 39 39 H 1.09000 * 109.47608 * 300.00242 * 5 4 3 40 40 H 0.96994 * 119.99893 * 359.72152 * 8 6 5 41 41 H 1.09004 * 110.60905 * 237.01233 * 11 9 8 42 42 H 1.08996 * 110.60825 * 359.97438 * 11 9 8 43 43 H 1.09001 * 110.60748 * 312.98352 * 14 12 11 44 44 H 1.08995 * 110.74846 * 190.06046 * 14 12 11 45 45 H 1.09004 * 110.61500 * 241.48989 * 15 14 12 46 46 H 1.08994 * 110.61521 * 118.51053 * 15 14 12 47 47 H 1.08996 * 109.47004 * 290.00148 * 19 18 16 48 48 H 1.08998 * 109.46763 * 50.00371 * 19 18 16 49 49 H 0.96996 * 119.99930 * 0.02562 * 22 20 19 50 50 H 0.97000 * 120.00527 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 -0.0012 6 6 5.3276 3.0575 -0.0024 7 8 6.0151 2.0585 -0.0033 8 7 5.9072 4.2744 -0.0026 9 6 7.3675 4.3902 -0.0044 10 1 7.8126 3.6071 -0.6183 11 6 7.8028 5.7906 -0.5011 12 6 8.5394 6.4008 0.7295 13 1 9.2180 7.2268 0.5166 14 6 7.4291 6.6964 1.7825 15 6 7.0109 5.2884 2.2724 16 6 7.9249 4.3303 1.4505 17 1 8.0520 3.3302 1.8652 18 7 9.1816 5.1493 1.3122 19 6 10.1166 4.5236 0.3675 20 6 11.2420 5.4798 0.0670 21 8 11.2634 6.5745 0.5888 22 7 12.2253 5.1179 -0.7808 23 6 13.2494 5.9876 -1.0539 24 1 13.2684 6.9624 -0.5892 25 6 14.2628 5.6148 -1.9283 26 7 14.2399 4.4285 -2.4932 27 14 15.6586 6.7994 -2.2997 28 1 15.4530 8.0598 -1.5420 29 1 16.9495 6.1849 -1.8982 30 1 15.6826 7.0953 -3.7548 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 3.8333 0.9769 -0.8908 37 1 3.8341 0.9767 0.8891 38 1 3.4228 3.4222 0.8889 39 1 3.4222 3.4218 -0.8911 40 1 5.3573 5.0735 -0.0060 41 1 8.4657 5.7034 -1.3620 42 1 6.9319 6.3984 -0.7464 43 1 6.5857 7.2071 1.3177 44 1 7.8268 7.2873 2.6075 45 1 5.9602 5.1012 2.0507 46 1 7.2039 5.1804 3.3397 47 1 10.5217 3.6122 0.8072 48 1 9.5911 4.2793 -0.5556 49 1 12.2083 4.2423 -1.1978 50 1 14.9476 4.1681 -3.1034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109046387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:03 Heat of formation + Delta-G solvation = -91.891280 kcal Electronic energy + Delta-G solvation = -29993.629408 eV Core-core repulsion = 25828.568012 eV Total energy + Delta-G solvation = -4165.061396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23696 -39.50746 -38.22266 -37.77723 -34.42852 -33.87218 -32.85823 -31.95783 -31.12815 -30.74841 -29.70522 -28.39360 -26.45162 -24.28068 -23.99577 -23.15521 -22.09723 -20.85768 -20.20735 -19.42188 -18.93949 -17.85435 -17.69687 -16.81095 -16.59766 -16.43836 -15.81197 -15.74165 -15.56105 -15.09452 -14.82953 -14.47176 -14.25508 -13.90077 -13.77074 -13.64636 -13.01211 -12.82426 -12.77970 -12.61380 -12.43257 -12.15024 -12.06849 -11.93239 -11.77083 -11.68644 -11.48480 -11.46849 -11.41663 -11.29356 -11.06172 -10.74715 -10.67628 -10.34143 -10.22262 -10.15271 -10.06374 -9.95807 -9.50033 -9.34239 -8.40345 -8.06204 -7.94373 -6.41238 -3.82196 2.41462 2.71483 3.16271 3.26900 3.33862 3.51113 3.90121 3.98080 4.20754 4.40618 4.54237 4.62992 4.64773 4.69383 4.73015 4.81903 4.89410 4.99935 5.03704 5.14616 5.18122 5.21390 5.24709 5.29499 5.32551 5.42089 5.43398 5.44786 5.46006 5.53269 5.68205 5.70148 5.71041 5.86609 5.95903 5.99359 6.00177 6.18910 6.23834 6.28553 6.38213 6.53407 6.80855 6.87048 7.22826 7.28070 7.55559 8.00693 8.06645 8.61786 9.18271 9.54937 10.06273 10.76492 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.002078 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.444435 B =13473.247206 C =14421.730608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.139 4.139 6 C 0.516 3.484 7 O -0.539 6.539 8 N -0.713 5.713 9 C 0.111 3.889 10 H 0.093 0.907 11 C -0.161 4.161 12 C 0.059 3.941 13 H 0.136 0.864 14 C -0.116 4.116 15 C -0.112 4.112 16 C 0.034 3.966 17 H 0.112 0.888 18 N -0.466 5.466 19 C 0.022 3.978 20 C 0.446 3.554 21 O -0.581 6.581 22 N -0.563 5.563 23 C -0.298 4.298 24 H 0.104 0.896 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.400 0.600 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.055 0.945 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.486 -4.829 4.073 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.179 4.179 6 C 0.302 3.698 7 O -0.416 6.416 8 N -0.365 5.365 9 C 0.005 3.995 10 H 0.111 0.889 11 C -0.201 4.201 12 C -0.049 4.049 13 H 0.154 0.846 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.076 4.076 17 H 0.130 0.870 18 N -0.188 5.188 19 C -0.110 4.110 20 C 0.231 3.769 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.122 0.878 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.235 0.765 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.564 -4.661 4.826 25.464 hybrid contribution 0.307 -0.176 -1.434 1.477 sum -24.257 -4.837 3.392 24.966 Atomic orbital electron populations 1.21750 0.93682 1.02308 1.03111 1.22456 0.95489 0.83503 1.00367 1.87796 1.21160 1.26857 1.95607 1.22099 0.80637 0.95306 1.01857 1.21469 0.92513 0.98323 1.05633 1.20397 0.90001 0.83465 0.75944 1.90736 1.65286 1.36342 1.49196 1.46053 1.07462 1.07995 1.74979 1.22841 0.79567 0.98380 0.98692 0.88864 1.23539 1.01290 0.94786 1.00441 1.24886 0.93904 0.95279 0.90836 0.84638 1.22598 0.97202 0.96591 0.98980 1.22527 0.98057 0.94580 0.99825 1.24816 0.90488 0.97984 0.94296 0.87032 1.67854 1.07964 1.02971 1.40041 1.22152 0.94692 0.98299 0.95830 1.19677 0.84804 0.88700 0.83704 1.90476 1.78394 1.23307 1.54403 1.41877 1.20965 1.17386 1.39751 1.19746 0.99989 0.98797 1.24276 0.87847 1.25264 0.99119 0.96908 0.96676 1.69622 1.34684 1.19324 1.30590 0.85808 0.80341 0.80155 0.78078 1.19225 1.20751 1.20813 0.91846 0.91849 0.91052 0.93256 0.93243 0.92389 0.92328 0.88004 0.88085 0.76471 0.90011 0.90684 0.91844 0.90894 0.91528 0.91300 0.89180 0.92674 0.77482 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.39 -3.64 10.34 -35.23 -0.36 -4.01 16 4 C 0.08 0.71 5.23 37.16 0.19 0.90 16 5 C -0.14 -1.07 6.07 -27.88 -0.17 -1.23 16 6 C 0.52 5.47 7.83 -10.98 -0.09 5.38 16 7 O -0.54 -7.93 15.71 5.56 0.09 -7.85 16 8 N -0.71 -6.71 3.59 -51.37 -0.18 -6.89 16 9 C 0.11 1.37 2.26 -65.41 -0.15 1.22 16 10 H 0.09 1.35 6.75 -51.93 -0.35 1.00 16 11 C -0.16 -2.04 5.40 -24.24 -0.13 -2.18 16 12 C 0.06 0.89 4.20 -61.60 -0.26 0.63 16 13 H 0.14 2.50 6.41 -51.93 -0.33 2.17 16 14 C -0.12 -1.36 6.46 -24.24 -0.16 -1.52 16 15 C -0.11 -1.25 6.32 -24.24 -0.15 -1.40 16 16 C 0.03 0.46 4.79 -62.52 -0.30 0.16 16 17 H 0.11 1.57 8.14 -51.92 -0.42 1.14 16 18 N -0.47 -7.78 5.48 -205.60 -1.13 -8.91 16 19 C 0.02 0.41 5.25 -4.97 -0.03 0.38 16 20 C 0.45 10.45 7.55 -10.98 -0.08 10.37 16 21 O -0.58 -15.30 13.83 5.54 0.08 -15.23 16 22 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 23 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 24 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 27 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 2.67 8.03 -40.82 -0.33 2.35 16 41 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16 42 H 0.07 0.76 7.35 -51.93 -0.38 0.38 16 43 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.61 6.48 -51.93 -0.34 0.27 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 48 H 0.06 0.93 4.88 -51.93 -0.25 0.68 16 49 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -32.89 395.86 -8.93 -41.82 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -8.10 Total: 12.36 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.93 Total: 4.97 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.64 Total: -54.09 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.20 Total: -27.08 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.89 -8.93 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109046387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.070 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds