Wall clock time and date at job start Tue Mar 31 2020 23:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46837 * 2 1 4 4 C 1.42902 * 114.00039 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46973 * 180.02562 * 5 4 3 7 7 O 1.21275 * 120.00418 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99815 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99831 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.54912 * 36.91155 * 9 8 6 11 11 C 1.54837 * 110.61450 * 159.95174 * 9 8 6 12 12 C 1.55861 * 103.51301 * 117.40329 * 11 9 8 13 13 H 1.09004 * 115.89632 * 159.82644 * 12 11 9 14 14 C 1.55859 * 105.72306 * 289.26378 * 12 11 9 15 15 C 1.54833 * 103.51497 * 71.48844 * 14 12 11 16 16 C 1.55849 * 103.52147 * 0.02562 * 15 14 12 17 17 H 1.09008 * 115.58173 * 159.64402 * 16 15 14 18 18 N 1.50645 * 101.73507 * 33.22588 * 16 15 14 19 19 C 1.46904 * 111.00183 * 189.56857 * 18 16 15 20 20 C 1.50703 * 109.46759 * 169.99870 * 19 18 16 21 21 O 1.21296 * 120.00070 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99538 * 179.97438 * 20 19 18 23 23 C 1.37101 * 119.99752 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99756 * 0.02562 * 23 22 20 25 25 C 1.38944 * 119.99837 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00304 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99756 * 180.02562 * 25 23 22 28 28 H 1.48491 * 109.47358 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47183 * 119.99768 * 27 25 23 30 30 H 1.48507 * 109.46785 * 239.99465 * 27 25 23 31 31 H 1.08998 * 109.46834 * 299.99881 * 1 2 3 32 32 H 1.08992 * 109.47231 * 60.00252 * 1 2 3 33 33 H 1.09000 * 109.46667 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46834 * 240.00119 * 2 1 3 35 35 H 1.08999 * 109.47374 * 119.99383 * 2 1 3 36 36 H 1.08998 * 109.46895 * 60.00036 * 4 3 2 37 37 H 1.08993 * 109.47229 * 299.99776 * 4 3 2 38 38 H 1.09006 * 109.46686 * 60.00159 * 5 4 3 39 39 H 1.09000 * 109.47608 * 300.00242 * 5 4 3 40 40 H 0.96994 * 119.99893 * 359.72152 * 8 6 5 41 41 H 1.09004 * 110.60905 * 237.01233 * 11 9 8 42 42 H 1.08996 * 110.60825 * 359.97438 * 11 9 8 43 43 H 1.09001 * 110.60748 * 312.98352 * 14 12 11 44 44 H 1.08995 * 110.74846 * 190.06046 * 14 12 11 45 45 H 1.09004 * 110.61500 * 241.48989 * 15 14 12 46 46 H 1.08994 * 110.61521 * 118.51053 * 15 14 12 47 47 H 1.08996 * 109.47004 * 290.00148 * 19 18 16 48 48 H 1.08998 * 109.46763 * 50.00371 * 19 18 16 49 49 H 0.96996 * 119.99930 * 0.02562 * 22 20 19 50 50 H 0.97000 * 120.00527 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 -0.0012 6 6 5.3276 3.0575 -0.0024 7 8 6.0151 2.0585 -0.0033 8 7 5.9072 4.2744 -0.0026 9 6 7.3675 4.3902 -0.0044 10 1 7.8126 3.6071 -0.6183 11 6 7.8028 5.7906 -0.5011 12 6 8.5394 6.4008 0.7295 13 1 9.2180 7.2268 0.5166 14 6 7.4291 6.6964 1.7825 15 6 7.0109 5.2884 2.2724 16 6 7.9249 4.3303 1.4505 17 1 8.0520 3.3302 1.8652 18 7 9.1816 5.1493 1.3122 19 6 10.1166 4.5236 0.3675 20 6 11.2420 5.4798 0.0670 21 8 11.2634 6.5745 0.5888 22 7 12.2253 5.1179 -0.7808 23 6 13.2494 5.9876 -1.0539 24 1 13.2684 6.9624 -0.5892 25 6 14.2628 5.6148 -1.9283 26 7 14.2399 4.4285 -2.4932 27 14 15.6586 6.7994 -2.2997 28 1 15.4530 8.0598 -1.5420 29 1 16.9495 6.1849 -1.8982 30 1 15.6826 7.0953 -3.7548 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 3.8333 0.9769 -0.8908 37 1 3.8341 0.9767 0.8891 38 1 3.4228 3.4222 0.8889 39 1 3.4222 3.4218 -0.8911 40 1 5.3573 5.0735 -0.0060 41 1 8.4657 5.7034 -1.3620 42 1 6.9319 6.3984 -0.7464 43 1 6.5857 7.2071 1.3177 44 1 7.8268 7.2873 2.6075 45 1 5.9602 5.1012 2.0507 46 1 7.2039 5.1804 3.3397 47 1 10.5217 3.6122 0.8072 48 1 9.5911 4.2793 -0.5556 49 1 12.2083 4.2423 -1.1978 50 1 14.9476 4.1681 -3.1034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109046387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:02 Heat of formation + Delta-G solvation = -117.039915 kcal Electronic energy + Delta-G solvation = -29994.719935 eV Core-core repulsion = 25828.568012 eV Total energy + Delta-G solvation = -4166.151923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.33954 -40.51159 -39.64578 -38.83889 -36.02439 -35.29601 -33.49665 -33.44888 -32.92394 -31.39361 -30.74107 -29.43158 -28.06894 -25.99582 -24.84905 -23.67333 -23.03903 -21.93777 -21.45522 -20.62863 -20.44735 -19.77089 -18.52131 -17.80041 -17.48266 -17.37539 -17.26830 -16.79143 -16.65908 -16.44625 -15.98779 -15.83058 -15.59248 -15.28780 -14.73009 -14.68012 -14.43709 -14.02110 -13.79038 -13.60248 -13.40714 -13.24617 -13.20213 -13.01411 -12.98047 -12.79041 -12.68545 -12.64860 -12.52274 -12.40829 -12.11903 -12.02210 -12.00382 -11.87073 -11.72140 -11.47270 -11.14651 -10.98034 -10.60301 -10.36687 -10.24968 -10.02385 -9.33366 -8.47881 -5.96979 1.35284 1.40463 1.55020 1.59524 1.92501 2.03097 2.27129 2.72373 2.89416 3.18301 3.22318 3.54734 3.60274 3.73512 3.81378 4.05107 4.06237 4.12406 4.18112 4.19491 4.20121 4.28924 4.37774 4.39803 4.42892 4.49772 4.50948 4.52835 4.53489 4.75186 4.76782 4.81771 4.84121 4.91870 4.93675 5.02716 5.05087 5.21553 5.26097 5.28924 5.33535 5.39669 5.46541 5.72369 5.84287 6.05517 6.18787 6.52762 6.57842 7.10794 7.23364 7.53527 8.08512 8.69919 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.002078 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.444435 B =13473.247206 C =14421.730608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.403 6.403 4 C 0.078 3.922 5 C -0.128 4.128 6 C 0.517 3.483 7 O -0.584 6.584 8 N -0.697 5.697 9 C 0.124 3.876 10 H 0.069 0.931 11 C -0.150 4.150 12 C 0.046 3.954 13 H 0.096 0.904 14 C -0.105 4.105 15 C -0.102 4.102 16 C 0.033 3.967 17 H 0.104 0.896 18 N -0.491 5.491 19 C 0.036 3.964 20 C 0.446 3.554 21 O -0.612 6.612 22 N -0.574 5.574 23 C -0.331 4.331 24 H 0.081 0.919 25 C -0.015 4.015 26 N -0.922 5.922 27 Si 0.995 3.005 28 H -0.272 1.272 29 H -0.272 1.272 30 H -0.270 1.270 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.419 0.581 41 H 0.058 0.942 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.067 0.933 47 H 0.096 0.904 48 H 0.069 0.931 49 H 0.394 0.606 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.973 -4.401 4.082 28.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.324 6.324 4 C 0.001 3.999 5 C -0.167 4.167 6 C 0.305 3.695 7 O -0.464 6.464 8 N -0.350 5.350 9 C 0.016 3.984 10 H 0.088 0.912 11 C -0.189 4.189 12 C -0.062 4.062 13 H 0.114 0.886 14 C -0.143 4.143 15 C -0.139 4.139 16 C -0.077 4.077 17 H 0.122 0.878 18 N -0.214 5.214 19 C -0.096 4.096 20 C 0.233 3.767 21 O -0.498 6.498 22 N -0.211 5.211 23 C -0.460 4.460 24 H 0.099 0.901 25 C -0.214 4.214 26 N -0.563 5.563 27 Si 0.818 3.182 28 H -0.196 1.196 29 H -0.197 1.197 30 H -0.196 1.196 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.258 0.742 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.086 0.914 47 H 0.114 0.886 48 H 0.087 0.913 49 H 0.227 0.773 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.095 -4.222 4.835 27.845 hybrid contribution 1.044 -0.339 -1.404 1.782 sum -26.051 -4.561 3.432 26.669 Atomic orbital electron populations 1.21757 0.92416 1.03394 1.02946 1.22662 0.96570 0.82819 1.00689 1.87776 1.20952 1.28011 1.95616 1.22054 0.80712 0.96325 1.00851 1.21425 0.89883 0.97634 1.07805 1.20922 0.91115 0.82846 0.74658 1.90732 1.66521 1.37943 1.51234 1.45843 1.06161 1.08707 1.74339 1.22455 0.81294 0.97220 0.97387 0.91249 1.23407 1.01824 0.95283 0.98421 1.24782 0.94398 0.93671 0.93301 0.88639 1.22582 0.96897 0.97139 0.97702 1.22534 0.98989 0.93135 0.99289 1.24848 0.89432 0.97839 0.95561 0.87805 1.67865 1.09530 1.04339 1.39703 1.21966 0.93528 0.96912 0.97150 1.20553 0.85091 0.88931 0.82100 1.90454 1.79185 1.24988 1.55148 1.41952 1.21317 1.17254 1.40618 1.19717 1.01815 0.98758 1.25755 0.90074 1.26074 1.00929 0.98553 0.95859 1.69692 1.35517 1.20434 1.30694 0.84844 0.77302 0.77810 0.78206 1.19605 1.19743 1.19567 0.91926 0.92031 0.89403 0.93052 0.92882 0.93657 0.93288 0.85503 0.85985 0.74224 0.92358 0.87186 0.88225 0.91898 0.88484 0.91419 0.88605 0.91318 0.77285 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.05 0.64 6.66 71.98 0.48 1.12 16 3 O -0.40 -6.74 10.34 -148.98 -1.54 -8.28 16 4 C 0.08 1.29 5.23 71.98 0.38 1.67 16 5 C -0.13 -1.55 6.07 29.85 0.18 -1.37 16 6 C 0.52 9.76 7.83 87.66 0.69 10.44 16 7 O -0.58 -16.81 15.71 -3.01 -0.05 -16.85 16 8 N -0.70 -10.95 3.59 -434.83 -1.56 -12.52 16 9 C 0.12 2.87 2.26 46.63 0.11 2.98 16 10 H 0.07 2.00 6.75 -2.39 -0.02 1.98 16 11 C -0.15 -3.61 5.40 32.21 0.17 -3.44 16 12 C 0.05 1.39 4.20 45.83 0.19 1.58 16 13 H 0.10 3.68 6.41 -2.39 -0.02 3.66 16 14 C -0.11 -2.22 6.46 32.21 0.21 -2.01 16 15 C -0.10 -1.98 6.32 32.21 0.20 -1.78 16 16 C 0.03 0.85 4.79 46.17 0.22 1.07 16 17 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 18 N -0.49 -16.54 5.48 -804.38 -4.40 -20.94 16 19 C 0.04 1.37 5.25 85.56 0.45 1.82 16 20 C 0.45 21.83 7.55 87.66 0.66 22.49 16 21 O -0.61 -33.74 13.83 -3.08 -0.04 -33.78 16 22 N -0.57 -30.36 5.29 -306.97 -1.62 -31.99 16 23 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 24 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 25 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 26 N -0.92 -50.88 13.05 21.66 0.28 -50.59 16 27 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 30 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.13 0.97 8.14 -2.38 -0.02 0.96 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.42 3.57 8.03 -92.71 -0.74 2.83 16 41 H 0.06 1.69 7.37 -2.38 -0.02 1.67 16 42 H 0.11 1.84 7.35 -2.39 -0.02 1.82 16 43 H 0.10 1.40 7.85 -2.39 -0.02 1.38 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.10 1.32 6.48 -2.39 -0.02 1.30 16 46 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 48 H 0.07 2.40 4.88 -2.39 -0.01 2.39 16 49 H 0.39 20.13 7.90 -92.71 -0.73 19.40 16 50 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -74.61 395.86 -1.46 -76.07 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.51 Total: 38.05 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 5.96 Total: 15.32 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -7.31 Total: -116.04 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -1.63 Total: -58.92 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -74.61 -1.46 -76.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109046387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.967 kcal (2) G-P(sol) polarization free energy of solvation -74.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds