Wall clock time and date at job start Tue Mar 31 2020 23:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46764 * 2 1 4 4 C 1.42895 * 113.99920 * 180.02562 * 3 2 1 5 5 C 1.53777 * 113.61648 * 210.00269 * 4 3 2 6 6 C 1.53785 * 87.08119 * 220.01501 * 5 4 3 7 7 C 1.50706 * 113.61066 * 139.97759 * 6 5 4 8 8 O 1.21278 * 119.99926 * 1.53317 * 7 6 5 9 9 N 1.34771 * 119.99931 * 181.53298 * 7 6 5 10 10 C 1.47425 * 125.64767 * 359.69212 * 9 7 6 11 11 C 1.54910 * 104.83231 * 156.13676 * 10 9 7 12 12 C 1.55160 * 101.58122 * 37.00939 * 11 10 9 13 13 H 1.09003 * 110.87062 * 82.93498 * 12 11 10 14 14 N 1.46897 * 110.71782 * 206.13435 * 12 11 10 15 15 C 1.46908 * 111.00028 * 268.51891 * 14 12 11 16 16 C 1.50698 * 109.47222 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99773 * 0.02562 * 16 15 14 18 18 N 1.34767 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00550 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99375 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00496 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00077 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00205 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46884 * 59.99870 * 23 21 19 25 25 H 1.48496 * 109.47217 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47010 * 300.00272 * 23 21 19 27 27 C 1.47026 * 125.65100 * 180.02562 * 9 7 6 28 28 C 1.53778 * 87.16961 * 25.39124 * 6 5 4 29 29 H 1.08995 * 109.47471 * 299.99528 * 1 2 3 30 30 H 1.08997 * 109.47309 * 59.99852 * 1 2 3 31 31 H 1.09002 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46866 * 240.00066 * 2 1 3 33 33 H 1.08997 * 109.47309 * 120.00148 * 2 1 3 34 34 H 1.09008 * 112.90928 * 341.25485 * 4 3 2 35 35 H 1.09004 * 113.61793 * 105.47129 * 5 4 3 36 36 H 1.08998 * 113.61490 * 334.56376 * 5 4 3 37 37 H 1.09000 * 113.61850 * 270.79881 * 6 5 4 38 38 H 1.09001 * 110.36478 * 274.97629 * 10 9 7 39 39 H 1.08998 * 110.36859 * 37.30006 * 10 9 7 40 40 H 1.08991 * 111.00552 * 278.93287 * 11 10 9 41 41 H 1.09004 * 111.03615 * 155.09334 * 11 10 9 42 42 H 1.00900 * 111.00611 * 32.47396 * 14 12 11 43 43 H 1.09003 * 109.46989 * 300.00361 * 15 14 12 44 44 H 1.09004 * 109.47061 * 60.00160 * 15 14 12 45 45 H 0.97008 * 120.00320 * 359.97438 * 18 16 15 46 46 H 0.96997 * 120.00064 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.87531 * 300.21113 * 27 9 7 48 48 H 1.09000 * 109.87938 * 61.37366 * 27 9 7 49 49 H 1.09000 * 113.61969 * 89.15809 * 28 6 5 50 50 H 1.09005 * 113.61380 * 220.05529 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4602 -0.0006 5 6 3.9488 2.7251 0.7039 6 6 4.9895 2.8315 -0.4232 7 6 5.2270 4.2432 -0.8943 8 8 4.6397 5.1648 -0.3684 9 7 6.0919 4.4815 -1.9000 10 6 6.8740 3.4605 -2.6207 11 6 7.1952 4.1027 -3.9933 12 6 7.4329 5.5837 -3.5963 13 1 8.4519 5.7311 -3.2384 14 7 7.1468 6.4771 -4.7267 15 6 8.3574 6.7255 -5.5209 16 6 8.0257 7.6443 -6.6685 17 8 6.8924 8.0524 -6.8104 18 7 8.9882 8.0125 -7.5369 19 6 8.6866 8.8488 -8.5806 20 1 7.6776 9.2128 -8.7065 21 6 9.6791 9.2288 -9.4756 22 7 10.9071 8.7870 -9.3215 23 14 9.2682 10.3689 -10.8972 24 1 8.7520 11.6560 -10.3662 25 1 10.4918 10.6193 -11.7005 26 1 8.2340 9.7371 -11.7554 27 6 6.4169 5.8033 -2.4557 28 6 4.0038 2.0458 -1.3040 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9290 0.5458 0.3217 35 1 4.3849 2.5316 1.6840 36 1 3.2303 3.5448 0.7136 37 1 5.9144 2.2933 -0.2158 38 1 7.7947 3.2375 -2.0814 39 1 6.2830 2.5545 -2.7547 40 1 6.3493 4.0118 -4.6746 41 1 8.0938 3.6660 -4.4289 42 1 6.4063 6.1057 -5.3028 43 1 9.1160 7.1905 -4.8912 44 1 8.7372 5.7806 -5.9097 45 1 9.8947 7.6864 -7.4232 46 1 11.5999 9.0520 -9.9465 47 1 5.5146 6.2723 -2.8483 48 1 6.8578 6.4323 -1.6823 49 1 3.3003 2.6793 -1.8443 50 1 4.4841 1.3045 -1.9427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182302852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:12 Heat of formation + Delta-G solvation = -92.093752 kcal Electronic energy + Delta-G solvation = -28782.990071 eV Core-core repulsion = 24617.919895 eV Total energy + Delta-G solvation = -4165.070176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.83548 -39.33706 -38.36468 -37.65984 -36.30201 -34.76035 -33.80642 -31.44922 -31.26559 -30.64824 -29.18450 -26.85078 -26.14118 -25.55095 -23.90867 -23.30942 -23.10515 -21.18307 -20.42326 -19.30602 -19.21237 -18.04807 -17.88961 -16.76805 -16.56932 -16.19623 -15.96152 -15.93171 -15.30567 -15.16823 -14.66848 -14.53374 -14.17809 -13.90395 -13.67930 -13.61635 -13.33098 -13.20362 -12.94548 -12.84598 -12.70779 -12.55856 -12.40970 -12.11130 -11.93559 -11.86740 -11.67575 -11.52361 -11.48762 -11.38098 -11.24213 -11.05092 -11.03448 -10.97790 -10.45025 -10.22721 -9.97016 -9.77632 -9.51622 -8.81044 -8.50806 -8.11586 -7.97896 -6.43257 -3.84161 2.43359 2.70549 3.19554 3.25358 3.29876 3.32553 3.88172 3.99559 4.03176 4.10798 4.21169 4.26890 4.33158 4.39281 4.45740 4.64546 4.69214 4.77922 4.85157 4.90546 4.93460 5.05785 5.11579 5.16674 5.19288 5.23547 5.26597 5.33146 5.38659 5.48480 5.56063 5.56655 5.62889 5.70750 5.71778 5.73102 5.83704 5.88715 5.92210 5.95883 6.12826 6.24535 6.87797 7.13282 7.33308 7.53778 7.55649 8.01011 8.04344 8.59280 9.16270 9.52116 10.03542 10.74302 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.001600 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.734458 B =17500.011831 C =17893.880688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.371 6.371 4 C 0.064 3.936 5 C -0.113 4.113 6 C -0.133 4.133 7 C 0.540 3.460 8 O -0.535 6.535 9 N -0.617 5.617 10 C 0.103 3.897 11 C -0.167 4.167 12 C 0.080 3.920 13 H 0.094 0.906 14 N -0.658 5.658 15 C 0.052 3.948 16 C 0.439 3.561 17 O -0.583 6.583 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.115 3.885 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.354 0.646 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.096 0.904 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.317 -22.194 18.843 30.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.290 6.290 4 C 0.006 3.994 5 C -0.151 4.151 6 C -0.154 4.154 7 C 0.328 3.672 8 O -0.411 6.411 9 N -0.352 5.352 10 C -0.021 4.021 11 C -0.207 4.207 12 C -0.032 4.032 13 H 0.112 0.888 14 N -0.290 5.290 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.008 4.008 28 C -0.176 4.176 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.175 0.825 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.114 0.886 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.341 -20.629 19.323 29.769 hybrid contribution 0.978 -0.794 -1.244 1.770 sum -8.363 -21.423 18.079 29.253 Atomic orbital electron populations 1.21755 0.93732 1.02238 1.03304 1.22527 0.95750 0.83956 0.99930 1.88006 1.20294 1.26244 1.94481 1.23657 0.81465 0.97988 0.96301 1.23125 0.96947 0.98139 0.96867 1.22455 0.99568 0.93810 0.99592 1.19952 0.77992 0.90725 0.78520 1.90723 1.48360 1.45907 1.56160 1.48486 1.42603 1.09006 1.35115 1.22279 0.95624 0.91836 0.92319 1.23592 1.02978 0.97635 0.96515 1.22609 0.98935 0.89331 0.92295 0.88798 1.59945 1.08829 1.48381 1.11837 1.21701 0.92735 0.98425 0.95165 1.19784 0.86402 0.86328 0.85034 1.90535 1.21212 1.59233 1.75702 1.41847 1.10441 1.43129 1.24497 1.19664 0.97321 1.23077 1.02970 0.87954 1.25254 0.94795 0.98474 0.99313 1.69600 1.01171 1.45241 1.38298 0.85915 0.77580 0.80309 0.80404 1.19853 1.20971 1.19925 1.21931 0.99623 0.83979 0.95299 1.23477 0.97544 0.99324 0.97242 0.91805 0.91741 0.91143 0.93367 0.93397 0.89209 0.90378 0.87591 0.86815 0.91134 0.90553 0.90080 0.89561 0.82537 0.89456 0.93664 0.77461 0.91816 0.90170 0.91004 0.88589 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.05 0.35 6.50 37.16 0.24 0.59 16 3 O -0.37 -3.39 10.36 -35.23 -0.36 -3.75 16 4 C 0.06 0.46 4.31 -25.83 -0.11 0.35 16 5 C -0.11 -0.96 7.23 -25.92 -0.19 -1.15 16 6 C -0.13 -1.07 3.15 -90.96 -0.29 -1.36 16 7 C 0.54 6.49 7.37 -10.98 -0.08 6.41 16 8 O -0.54 -8.72 16.24 5.56 0.09 -8.63 16 9 N -0.62 -6.67 3.33 -170.52 -0.57 -7.24 16 10 C 0.10 0.77 6.67 -2.53 -0.02 0.76 16 11 C -0.17 -1.46 6.67 -24.58 -0.16 -1.62 16 12 C 0.08 0.90 3.28 -65.88 -0.22 0.69 16 13 H 0.09 0.98 7.82 -51.93 -0.41 0.57 16 14 N -0.66 -10.07 5.93 -106.05 -0.63 -10.70 16 15 C 0.05 0.87 6.03 -4.97 -0.03 0.84 16 16 C 0.44 10.16 7.82 -10.99 -0.09 10.07 16 17 O -0.58 -15.73 15.78 5.55 0.09 -15.64 16 18 N -0.56 -14.03 5.29 -10.97 -0.06 -14.09 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.11 1.43 6.62 -3.07 -0.02 1.41 16 28 C -0.14 -1.02 6.97 -25.83 -0.18 -1.20 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.44 7.87 -51.92 -0.41 0.03 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 1.19 7.45 -51.93 -0.39 0.81 16 37 H 0.11 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.45 7.06 -51.93 -0.37 0.09 16 40 H 0.08 0.76 7.77 -51.93 -0.40 0.36 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.35 5.65 7.91 -39.29 -0.31 5.34 16 43 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 50 H 0.08 0.42 7.97 -51.93 -0.41 0.00 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -34.13 409.89 -9.00 -43.13 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -8.44 Total: 10.99 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.00 Total: 7.35 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.53 Total: -55.55 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.19 Total: -28.02 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.13 -9.00 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182302852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.967 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds