Wall clock time and date at job start Tue Mar 31 2020 23:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47281 * 2 1 4 4 C 1.42909 * 113.99990 * 174.95280 * 3 2 1 5 5 H 1.09002 * 109.46682 * 24.03430 * 4 3 2 6 6 C 1.50699 * 109.46895 * 144.03481 * 4 3 2 7 7 O 1.21279 * 120.00172 * 4.99986 * 6 4 3 8 8 N 1.34774 * 119.99817 * 185.00138 * 6 4 3 9 9 C 1.47022 * 125.64717 * 359.97438 * 8 6 4 10 10 C 1.54325 * 107.27205 * 181.07979 * 9 8 6 11 11 C 1.55453 * 102.96692 * 22.18820 * 10 9 8 12 12 H 1.09003 * 111.01026 * 82.52788 * 11 10 9 13 13 N 1.46899 * 111.11710 * 206.46467 * 11 10 9 14 14 C 1.46898 * 111.00203 * 267.10478 * 13 11 10 15 15 C 1.50701 * 109.47582 * 179.97438 * 14 13 11 16 16 O 1.21300 * 119.99458 * 0.02562 * 15 14 13 17 17 N 1.34767 * 120.00371 * 179.97438 * 15 14 13 18 18 C 1.37103 * 120.00224 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99491 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00163 * 180.02562 * 18 17 15 21 21 N 1.31419 * 120.00332 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99997 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47558 * 89.99835 * 22 20 18 24 24 H 1.48507 * 109.47302 * 209.99863 * 22 20 18 25 25 H 1.48503 * 109.47173 * 329.99745 * 22 20 18 26 26 C 1.47427 * 125.64761 * 179.97438 * 8 6 4 27 27 C 1.52990 * 109.47140 * 264.03510 * 4 3 2 28 28 C 1.53005 * 117.50210 * 9.00868 * 27 4 3 29 29 C 1.52999 * 59.99990 * 252.50729 * 28 27 4 30 30 H 1.08998 * 109.47316 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46683 * 299.99955 * 1 2 3 32 32 H 1.09001 * 109.46720 * 59.99849 * 1 2 3 33 33 H 1.09001 * 109.46683 * 240.00045 * 2 1 3 34 34 H 1.09001 * 109.46720 * 120.00151 * 2 1 3 35 35 H 1.09002 * 109.88113 * 300.49143 * 9 8 6 36 36 H 1.09000 * 109.88606 * 61.50669 * 9 8 6 37 37 H 1.08995 * 110.72459 * 140.54999 * 10 9 8 38 38 H 1.08997 * 110.72378 * 263.65485 * 10 9 8 39 39 H 1.00901 * 111.00049 * 143.15522 * 13 11 10 40 40 H 1.09007 * 109.47356 * 300.00273 * 14 13 11 41 41 H 1.09001 * 109.47304 * 60.00319 * 14 13 11 42 42 H 0.96999 * 120.00044 * 0.02562 * 17 15 14 43 43 H 0.96993 * 119.99862 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.37190 * 274.68883 * 26 8 6 45 45 H 1.08994 * 110.36725 * 36.90835 * 26 8 6 46 46 H 1.09001 * 115.55270 * 154.71658 * 27 4 3 47 47 H 1.09002 * 117.49393 * 0.02562 * 28 27 4 48 48 H 1.09000 * 117.49745 * 145.01651 * 28 27 4 49 49 H 1.09001 * 117.49906 * 252.50819 * 29 28 27 50 50 H 1.09000 * 117.49607 * 107.48607 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4262 1.4617 0.1149 5 1 3.8946 0.5433 -0.2393 6 6 3.9054 2.6233 -0.7171 7 8 3.1030 3.3426 -1.2734 8 7 5.2257 2.8627 -0.8430 9 6 6.3022 2.0744 -0.2254 10 6 7.6394 2.7337 -0.6237 11 6 7.2195 4.1880 -0.9777 12 1 7.1373 4.8005 -0.0798 13 7 8.1532 4.7893 -1.9391 14 6 9.2130 5.5355 -1.2476 15 6 10.1497 6.1361 -2.2639 16 8 9.9534 5.9603 -3.4479 17 7 11.2048 6.8694 -1.8573 18 6 12.0567 7.4163 -2.7819 19 1 11.8819 7.2597 -3.8361 20 6 13.1448 8.1719 -2.3627 21 7 13.3572 8.3628 -1.0800 22 14 14.3050 8.9175 -3.6226 23 1 13.8249 10.2720 -3.9972 24 1 15.6680 9.0187 -3.0415 25 1 14.3447 8.0548 -4.8306 26 6 5.8298 3.9583 -1.6228 27 6 3.8023 1.6940 1.5795 28 6 2.6945 1.5494 2.6249 29 6 3.2322 2.9363 2.2669 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 6.1930 2.0836 0.8591 36 1 6.2681 1.0486 -0.5926 37 1 8.3372 2.7271 0.2135 38 1 8.0732 2.2335 -1.4895 39 1 7.6654 5.3795 -2.5963 40 1 8.7669 6.3303 -0.6497 41 1 9.7682 4.8595 -0.5973 42 1 11.3615 7.0103 -0.9105 43 1 14.1169 8.8899 -0.7874 44 1 5.9399 3.6652 -2.6668 45 1 5.2218 4.8595 -1.5446 46 1 4.8064 1.3783 1.8629 47 1 1.6978 1.2883 2.2691 48 1 2.9696 1.1382 3.5962 49 1 3.8610 3.4376 3.0027 50 1 2.5891 3.5881 1.6756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182631630.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:15 Heat of formation + Delta-G solvation = -80.319673 kcal Electronic energy + Delta-G solvation = -29462.088996 eV Core-core repulsion = 25297.529382 eV Total energy + Delta-G solvation = -4164.559613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73000 -39.07583 -38.24507 -37.40184 -36.43116 -34.76931 -33.80747 -31.86713 -31.27963 -30.81772 -29.49642 -27.92715 -25.92763 -23.98842 -23.66222 -23.32803 -22.62823 -21.36952 -20.70512 -19.70155 -19.23521 -17.91545 -17.45073 -17.32454 -16.84126 -16.52324 -15.86214 -15.73133 -15.33003 -15.21406 -14.78285 -14.48923 -14.35116 -13.99458 -13.77376 -13.62399 -13.25823 -13.15427 -13.04168 -12.80477 -12.70798 -12.49492 -12.39176 -11.93775 -11.75383 -11.71069 -11.65366 -11.56540 -11.46574 -11.24655 -11.07208 -10.97350 -10.87126 -10.71442 -10.40403 -10.23457 -10.16955 -9.64430 -9.52736 -8.85322 -8.51055 -8.17337 -7.98307 -6.43537 -3.84448 2.33210 2.43742 3.16956 3.25870 3.27291 3.31801 3.47546 3.88147 4.04379 4.12820 4.21436 4.26419 4.41486 4.48549 4.53345 4.63196 4.72416 4.75147 4.81500 4.91231 4.95748 4.97452 5.04945 5.10498 5.20833 5.26807 5.29982 5.32599 5.34250 5.49456 5.52660 5.61274 5.67998 5.69782 5.76719 5.79406 5.82205 5.87329 5.91196 5.98572 6.06483 6.25384 6.68982 7.11854 7.26714 7.53672 7.54234 7.95709 8.04259 8.58912 9.16027 9.51955 10.03157 10.74111 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.001745 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.434146 B =16037.811063 C =16420.109377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.110 3.890 5 H 0.089 0.911 6 C 0.534 3.466 7 O -0.520 6.520 8 N -0.612 5.612 9 C 0.096 3.904 10 C -0.122 4.122 11 C 0.074 3.926 12 H 0.062 0.938 13 N -0.656 5.656 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.107 3.893 27 C -0.187 4.187 28 C -0.163 4.163 29 C -0.165 4.165 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.354 0.646 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.007 -17.956 10.791 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.271 6.271 4 C 0.048 3.952 5 H 0.107 0.893 6 C 0.321 3.679 7 O -0.395 6.395 8 N -0.348 5.348 9 C -0.027 4.027 10 C -0.161 4.161 11 C -0.038 4.038 12 H 0.080 0.920 13 N -0.289 5.289 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.016 4.016 27 C -0.206 4.206 28 C -0.200 4.200 29 C -0.202 4.202 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.174 0.826 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.137 0.863 47 H 0.122 0.878 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.274 -17.997 9.696 28.791 hybrid contribution 0.636 0.982 0.461 1.257 sum -19.638 -17.015 10.157 27.899 Atomic orbital electron populations 1.21734 0.93325 1.02297 1.03424 1.22648 0.95979 0.83461 1.00305 1.88032 1.18500 1.26519 1.94095 1.21225 0.83748 0.97142 0.93087 0.89291 1.19948 0.80701 0.86064 0.81181 1.90735 1.53050 1.48513 1.47198 1.48231 1.04667 1.31136 1.50786 1.22250 0.86934 0.95417 0.98089 1.22763 0.95054 0.95328 1.02923 1.22726 0.90348 0.95836 0.94864 0.91977 1.60078 1.12990 1.39466 1.16346 1.21729 0.93776 0.96563 0.96030 1.19772 0.84236 0.84006 0.89451 1.90535 1.75002 1.63613 1.17539 1.41855 1.23236 1.45114 1.09738 1.19711 1.04390 1.27777 0.91069 0.87886 1.25263 0.98239 0.97608 0.96800 1.69611 1.30486 1.40414 1.13776 0.85852 0.78923 0.79312 0.80166 1.20417 1.20922 1.19393 1.22357 0.92838 0.90436 0.95986 1.22755 0.99534 1.06113 0.92187 1.22955 0.98550 1.00324 0.98185 1.22922 1.03451 0.90908 1.02876 0.90948 0.91798 0.91584 0.93192 0.92854 0.91059 0.91293 0.90035 0.89076 0.82573 0.93655 0.89495 0.77461 0.91865 0.90090 0.90331 0.86307 0.87842 0.88700 0.88597 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.05 0.37 5.67 37.16 0.21 0.58 16 3 O -0.35 -3.71 8.20 -55.09 -0.45 -4.16 16 4 C 0.11 1.02 2.42 -27.89 -0.07 0.95 16 5 H 0.09 0.64 7.75 -51.93 -0.40 0.23 16 6 C 0.53 6.69 6.90 -10.99 -0.08 6.61 16 7 O -0.52 -8.79 16.76 -14.30 -0.24 -9.02 16 8 N -0.61 -6.63 3.33 -170.51 -0.57 -7.20 16 9 C 0.10 0.76 6.15 -3.06 -0.02 0.74 16 10 C -0.12 -1.15 6.66 -24.73 -0.16 -1.32 16 11 C 0.07 0.85 3.40 -65.40 -0.22 0.62 16 12 H 0.06 0.69 7.83 -51.93 -0.41 0.29 16 13 N -0.66 -9.90 6.04 -105.54 -0.64 -10.54 16 14 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 15 C 0.44 10.14 7.82 -10.99 -0.09 10.05 16 16 O -0.58 -15.58 15.78 5.54 0.09 -15.49 16 17 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.11 1.26 6.30 -2.52 -0.02 1.25 16 27 C -0.19 -1.41 4.93 -90.62 -0.45 -1.85 16 28 C -0.16 -1.14 9.52 -26.73 -0.25 -1.39 16 29 C -0.16 -1.41 9.81 -26.73 -0.26 -1.67 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.29 7.68 -51.93 -0.40 -0.11 16 35 H 0.07 0.45 5.97 -51.93 -0.31 0.14 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.35 5.63 8.14 -39.29 -0.32 5.31 16 40 H 0.05 0.69 8.09 -51.92 -0.42 0.27 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 46 H 0.12 0.68 6.46 -51.93 -0.34 0.35 16 47 H 0.10 0.78 6.35 -51.93 -0.33 0.45 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -33.96 407.76 -9.56 -43.52 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -8.25 Total: 11.55 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.29 Total: 6.94 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.54 Total: -55.36 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.60 Total: -28.68 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.96 -9.56 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182631630.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.799 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds