Wall clock time and date at job start Tue Mar 31 2020 23:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21277 * 119.99685 * 2 1 4 4 N 1.34776 * 119.99908 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99569 * 184.71760 * 4 2 1 6 6 C 1.50701 * 109.47483 * 55.02082 * 5 4 2 7 7 O 1.21278 * 120.00483 * 216.03708 * 6 5 4 8 8 N 1.34782 * 119.99745 * 36.04584 * 6 5 4 9 9 C 1.46493 * 120.00208 * 175.00310 * 8 6 5 10 10 H 1.08999 * 110.64391 * 34.29358 * 9 8 6 11 11 C 1.54329 * 110.72046 * 271.15562 * 9 8 6 12 12 N 1.47021 * 107.26907 * 219.44328 * 11 9 8 13 13 C 1.36936 * 125.64232 * 178.97512 * 12 11 9 14 14 H 1.07999 * 120.00631 * 359.97438 * 13 12 11 15 15 C 1.38823 * 119.99672 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00009 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99912 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47062 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46935 * 119.99979 * 17 15 13 20 20 H 1.48500 * 109.47047 * 239.99551 * 17 15 13 21 21 C 1.47416 * 108.70614 * 358.93987 * 12 11 9 22 22 C 1.55120 * 104.94555 * 24.00329 * 21 12 11 23 23 H 1.08995 * 111.16838 * 205.13686 * 22 21 12 24 24 O 1.42898 * 110.93823 * 81.21092 * 22 21 12 25 25 C 1.53004 * 109.47292 * 295.02358 * 5 4 2 26 26 C 1.52999 * 109.47098 * 300.00328 * 25 5 4 27 27 C 1.53002 * 109.47047 * 299.99862 * 26 25 5 28 28 C 1.53004 * 109.47059 * 60.00114 * 27 26 25 29 29 C 1.53000 * 109.46748 * 299.99719 * 28 27 26 30 30 H 1.09000 * 109.46783 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47007 * 299.99790 * 1 2 3 32 32 H 1.09000 * 109.47275 * 60.00296 * 1 2 3 33 33 H 0.96999 * 120.00219 * 4.98774 * 4 2 1 34 34 H 0.97000 * 119.99400 * 354.99968 * 8 6 5 35 35 H 1.09001 * 109.88081 * 338.85792 * 11 9 8 36 36 H 1.09001 * 109.88025 * 100.02145 * 11 9 8 37 37 H 0.96999 * 120.00090 * 180.02562 * 16 15 13 38 38 H 1.09002 * 110.37187 * 142.96779 * 21 12 11 39 39 H 1.09005 * 110.36713 * 265.18126 * 21 12 11 40 40 H 0.96706 * 113.99402 * 67.96141 * 24 22 21 41 41 H 1.08999 * 109.46677 * 60.00141 * 25 5 4 42 42 H 1.08998 * 109.47449 * 180.02562 * 25 5 4 43 43 H 1.08999 * 109.47440 * 179.97438 * 26 25 5 44 44 H 1.08998 * 109.47149 * 59.99597 * 26 25 5 45 45 H 1.08998 * 109.46930 * 299.99869 * 27 26 25 46 46 H 1.09006 * 109.47128 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.46914 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.47449 * 60.00074 * 28 27 26 49 49 H 1.08998 * 109.47435 * 300.00364 * 29 28 27 50 50 H 1.09007 * 109.46875 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6422 -1.1692 0.1049 6 6 4.0591 -0.4034 1.3340 7 8 5.0668 0.2712 1.3154 8 7 3.3122 -0.4684 2.4541 9 6 3.7733 0.1860 3.6809 10 1 4.3135 1.1035 3.4474 11 6 4.6549 -0.7702 4.5116 12 7 4.3107 -0.5634 5.9259 13 6 4.8564 -1.2359 6.9866 14 1 5.6082 -1.9926 6.8173 15 6 4.4426 -0.9456 8.2796 16 7 3.5261 -0.0238 8.4859 17 14 5.1866 -1.8634 9.7265 18 1 6.1880 -2.8413 9.2304 19 1 5.8492 -0.8964 10.6381 20 1 4.1144 -2.5815 10.4613 21 6 3.2813 0.4883 6.0130 22 6 2.5804 0.4776 4.6293 23 1 2.1327 1.4463 4.4074 24 8 1.6042 -0.5636 4.5593 25 6 4.2431 -0.5071 -1.1367 26 6 3.8198 -1.2845 -2.3846 27 6 4.3217 -2.7262 -2.2821 28 6 3.7208 -3.3883 -1.0405 29 6 4.1442 -2.6109 0.2074 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6987 -2.0057 -0.0721 34 1 2.4694 -0.9484 2.4477 35 1 4.4514 -1.8027 4.2277 36 1 5.7077 -0.5394 4.3487 37 1 3.2373 0.1793 9.3893 38 1 2.5671 0.2556 6.8029 39 1 3.7443 1.4582 6.1949 40 1 0.8397 -0.4252 5.1351 41 1 3.8855 0.5200 -1.2097 42 1 5.3303 -0.5090 -1.0593 43 1 4.2475 -0.8125 -3.2692 44 1 2.7326 -1.2830 -2.4622 45 1 5.4089 -2.7277 -2.2045 46 1 4.0205 -3.2799 -3.1714 47 1 4.0788 -4.4152 -0.9672 48 1 2.6336 -3.3868 -1.1181 49 1 5.2314 -2.6124 0.2850 50 1 3.7164 -3.0829 1.0920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219894442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:31 Heat of formation + Delta-G solvation = -128.281752 kcal Electronic energy + Delta-G solvation = -32154.169359 eV Core-core repulsion = 27987.529954 eV Total energy + Delta-G solvation = -4166.639405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.25363 -40.38069 -39.42086 -38.51007 -36.41828 -35.62236 -34.81660 -33.53624 -31.93246 -31.82927 -30.32422 -29.48531 -28.77439 -26.55154 -24.60980 -23.71756 -22.50801 -22.19647 -21.77236 -21.27007 -20.15219 -19.29199 -18.47451 -18.34401 -18.01530 -17.15080 -16.88562 -16.53499 -16.17857 -16.11791 -15.92785 -15.47453 -15.20124 -14.92998 -14.83527 -14.75399 -14.59949 -14.34667 -13.81117 -13.65122 -13.56943 -13.37173 -13.25468 -13.21807 -12.99760 -12.95601 -12.88622 -12.77101 -12.29969 -12.14518 -12.11651 -11.94080 -11.89192 -11.77769 -11.50062 -11.27871 -11.03050 -10.92172 -10.76217 -10.70769 -10.19162 -10.02087 -8.94129 -7.82589 -5.26749 1.45465 1.46592 1.47437 1.57393 1.64206 2.02964 2.23967 2.47722 3.13573 3.28540 3.47026 3.59225 3.62989 3.74772 3.78260 3.90758 3.95571 4.13363 4.19514 4.22240 4.25690 4.42425 4.45056 4.48632 4.56974 4.63932 4.65322 4.71590 4.75675 4.78305 4.92551 4.99945 5.10088 5.12958 5.16150 5.19950 5.28752 5.29114 5.35539 5.40319 5.43069 5.45204 5.52245 5.67008 6.21664 6.48980 6.60582 6.85396 7.05563 7.19591 7.28680 7.69502 8.33230 9.19922 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.003223 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.762499 B = 8686.562313 C = 9434.357585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.584 6.584 4 N -0.706 5.706 5 C 0.177 3.823 6 C 0.511 3.489 7 O -0.584 6.584 8 N -0.690 5.690 9 C 0.151 3.849 10 H 0.079 0.921 11 C 0.137 3.863 12 N -0.614 5.614 13 C -0.242 4.242 14 H 0.076 0.924 15 C -0.060 4.060 16 N -0.945 5.945 17 Si 0.983 3.017 18 H -0.271 1.271 19 H -0.292 1.292 20 H -0.285 1.285 21 C 0.130 3.870 22 C 0.094 3.906 23 H 0.083 0.917 24 O -0.558 6.558 25 C -0.113 4.113 26 C -0.106 4.106 27 C -0.120 4.120 28 C -0.108 4.108 29 C -0.119 4.119 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.423 0.577 34 H 0.414 0.586 35 H 0.029 0.971 36 H 0.007 0.993 37 H 0.250 0.750 38 H 0.095 0.905 39 H -0.005 1.005 40 H 0.396 0.604 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.514 -8.129 -22.813 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.291 3.709 3 O -0.463 6.463 4 N -0.364 5.364 5 C 0.086 3.914 6 C 0.298 3.702 7 O -0.463 6.463 8 N -0.341 5.341 9 C 0.044 3.956 10 H 0.098 0.902 11 C 0.010 3.990 12 N -0.340 5.340 13 C -0.371 4.371 14 H 0.093 0.907 15 C -0.253 4.253 16 N -0.595 5.595 17 Si 0.811 3.189 18 H -0.196 1.196 19 H -0.219 1.219 20 H -0.211 1.211 21 C 0.004 3.996 22 C 0.033 3.967 23 H 0.100 0.900 24 O -0.366 6.366 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.157 4.157 28 C -0.145 4.145 29 C -0.157 4.157 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.263 0.737 34 H 0.252 0.748 35 H 0.047 0.953 36 H 0.025 0.975 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.013 0.987 40 H 0.247 0.753 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.089 0.911 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.970 -7.194 -23.011 25.724 hybrid contribution 0.116 0.058 1.696 1.701 sum -8.854 -7.136 -21.315 24.159 Atomic orbital electron populations 1.21886 0.87689 1.06784 1.05784 1.21758 0.92427 0.82845 0.73897 1.90770 1.71733 1.33279 1.50497 1.46174 1.05024 1.10077 1.75123 1.20356 0.82469 0.97193 0.91334 1.21491 0.82959 0.80532 0.85257 1.90653 1.28563 1.42376 1.84739 1.45548 1.24873 1.54960 1.08762 1.21744 0.94786 0.95408 0.83619 0.90246 1.21580 0.95496 0.96951 0.84967 1.44534 1.45798 1.43154 1.00519 1.19444 1.17200 1.14825 0.85595 0.90661 1.25586 1.00035 1.00103 0.99552 1.69949 1.34181 1.35448 1.19913 0.84944 0.77529 0.77583 0.78824 1.19576 1.21914 1.21144 1.22504 0.92248 0.89436 0.95400 1.23205 0.88419 0.90494 0.94590 0.89974 1.86182 1.34332 1.47629 1.68440 1.21683 1.00176 0.99549 0.93778 1.21458 1.01630 0.95809 0.95448 1.21592 1.00524 0.94800 0.98821 1.21537 1.02092 0.99151 0.91760 1.21839 1.02064 0.90317 1.01498 0.86927 0.88674 0.87784 0.73693 0.74788 0.95275 0.97524 0.94020 0.88685 0.98709 0.75335 0.93014 0.92255 0.91531 0.90885 0.92498 0.89547 0.89415 0.89480 0.91068 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 10.39 71.24 0.74 -1.00 16 2 C 0.50 10.39 6.92 87.66 0.61 10.99 16 3 O -0.58 -19.11 14.38 -3.02 -0.04 -19.15 16 4 N -0.71 -11.54 3.41 -426.32 -1.45 -12.99 16 5 C 0.18 4.15 0.59 2.86 0.00 4.15 16 6 C 0.51 17.77 5.17 87.66 0.45 18.22 16 7 O -0.58 -25.87 15.74 -3.02 -0.05 -25.91 16 8 N -0.69 -23.29 4.76 -436.92 -2.08 -25.37 16 9 C 0.15 6.15 3.19 46.18 0.15 6.30 16 10 H 0.08 3.57 7.56 -2.39 -0.02 3.55 16 11 C 0.14 6.46 7.00 86.73 0.61 7.07 16 12 N -0.61 -33.01 3.40 -691.56 -2.35 -35.35 16 13 C -0.24 -13.97 10.27 84.04 0.86 -13.11 16 14 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 15 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 16 N -0.95 -55.10 10.09 21.66 0.22 -54.88 16 17 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 C 0.13 6.38 5.62 86.93 0.49 6.87 16 22 C 0.09 3.55 4.31 32.06 0.14 3.69 16 23 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 24 O -0.56 -18.10 12.23 -148.98 -1.82 -19.92 16 25 C -0.11 -2.84 4.11 30.60 0.13 -2.71 16 26 C -0.11 -1.68 5.77 30.59 0.18 -1.50 16 27 C -0.12 -1.39 5.92 30.60 0.18 -1.21 16 28 C -0.11 -1.09 5.75 30.60 0.18 -0.92 16 29 C -0.12 -2.13 4.78 30.59 0.15 -1.98 16 30 H 0.11 0.38 7.92 -2.39 -0.02 0.36 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.42 3.39 7.00 -92.71 -0.65 2.74 16 34 H 0.41 12.05 6.72 -92.71 -0.62 11.43 16 35 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.10 5.08 5.87 -2.39 -0.01 5.06 16 39 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 40 H 0.40 9.97 9.12 -74.05 -0.68 9.29 16 41 H 0.05 1.65 6.38 -2.39 -0.02 1.64 16 42 H 0.06 1.69 7.88 -2.39 -0.02 1.68 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 0.99 7.60 -2.39 -0.02 0.97 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.50 6.76 -2.39 -0.02 0.48 16 49 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -82.34 386.71 -1.20 -83.54 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.97 Total: 30.32 kcal Atomic # 6 Polarization: 26.61 SS G_CDS: 5.32 Total: 31.93 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -5.66 Total: -128.60 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -1.91 Total: -64.99 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -82.34 -1.20 -83.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219894442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.739 kcal (2) G-P(sol) polarization free energy of solvation -82.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds