Wall clock time and date at job start Tue Mar 31 2020 23:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47197 * 119.78904 * 2 1 4 4 C 1.52987 * 108.66492 * 108.04187 * 3 2 1 5 5 C 1.51779 * 110.88255 * 86.46840 * 4 3 2 6 6 C 1.51795 * 113.81092 * 292.99815 * 5 4 3 7 7 C 1.53062 * 110.74293 * 66.80560 * 6 5 4 8 8 H 1.08995 * 109.63157 * 34.98820 * 7 6 5 9 9 C 1.50696 * 109.62996 * 155.38046 * 7 6 5 10 10 O 1.21278 * 120.00401 * 0.02562 * 9 7 6 11 11 N 1.34776 * 120.00078 * 180.02562 * 9 7 6 12 12 C 1.47158 * 120.98038 * 359.97438 * 11 9 7 13 13 C 1.53291 * 108.38147 * 129.44413 * 12 11 9 14 14 O 1.42961 * 109.22369 * 52.30495 * 13 12 11 15 15 C 1.42960 * 114.16577 * 297.41354 * 14 13 12 16 16 H 1.08990 * 109.51456 * 302.60648 * 15 14 13 17 17 C 1.53003 * 109.51194 * 182.50488 * 15 14 13 18 18 N 1.46501 * 109.47168 * 65.00251 * 17 15 14 19 19 C 1.36932 * 119.99845 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00437 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99901 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00372 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99955 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99982 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99472 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00079 * 23 21 19 27 27 C 1.47148 * 120.98641 * 179.97438 * 11 9 7 28 28 C 1.33380 * 119.78679 * 180.02562 * 2 1 3 29 29 O 1.21281 * 119.89050 * 0.28322 * 28 2 1 30 30 H 1.08994 * 109.46957 * 89.99780 * 1 2 3 31 31 H 1.09003 * 109.46573 * 210.00011 * 1 2 3 32 32 H 1.08993 * 109.46761 * 329.99488 * 1 2 3 33 33 H 1.09003 * 109.60266 * 348.29288 * 3 2 1 34 34 H 1.09002 * 109.74380 * 227.87628 * 3 2 1 35 35 H 1.09005 * 109.19333 * 326.10576 * 4 3 2 36 36 H 1.09002 * 109.15767 * 206.80984 * 4 3 2 37 37 H 1.08999 * 108.61208 * 171.88062 * 5 4 3 38 38 H 1.08991 * 108.50344 * 54.03886 * 5 4 3 39 39 H 1.08999 * 109.21909 * 306.48008 * 6 5 4 40 40 H 1.08998 * 109.21917 * 187.13262 * 6 5 4 41 41 H 1.08998 * 109.67884 * 9.72059 * 12 11 9 42 42 H 1.09001 * 109.71041 * 249.18442 * 12 11 9 43 43 H 1.09000 * 109.51484 * 292.37665 * 13 12 11 44 44 H 1.09006 * 109.54942 * 172.24905 * 13 12 11 45 45 H 1.09001 * 109.47340 * 305.00215 * 17 15 14 46 46 H 1.09000 * 109.46913 * 185.00504 * 17 15 14 47 47 H 0.97000 * 119.99725 * 0.02562 * 18 17 15 48 48 H 0.96993 * 120.00251 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.68526 * 110.83165 * 27 11 9 50 50 H 1.09000 * 109.67878 * 350.27929 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1963 1.2775 0.0000 4 6 2.8291 1.4794 1.3781 5 6 4.1873 0.8060 1.4537 6 6 4.1249 -0.7090 1.3841 7 6 3.6417 -1.1689 0.0064 8 1 4.0193 -0.4912 -0.7591 9 6 4.1388 -2.5656 -0.2641 10 8 4.8139 -3.1400 0.5636 11 7 3.8330 -3.1765 -1.4259 12 6 3.0149 -2.5000 -2.4450 13 6 3.7406 -2.5994 -3.7916 14 8 4.0718 -3.9663 -4.0480 15 6 4.9704 -4.5395 -3.0953 16 1 5.8874 -3.9515 -3.0602 17 6 5.3000 -5.9766 -3.5039 18 7 6.0341 -5.9677 -4.7717 19 6 6.4386 -7.1474 -5.3370 20 1 6.2160 -8.0846 -4.8485 21 6 7.1337 -7.1390 -6.5385 22 7 7.5229 -8.2729 -7.0816 23 14 7.5181 -5.5181 -7.3837 24 1 6.4101 -5.1671 -8.3082 25 1 7.6676 -4.4504 -6.3625 26 1 8.7818 -5.6483 -8.1526 27 6 4.3073 -4.5396 -1.7128 28 6 2.1276 -1.1576 -0.0005 29 8 1.5153 -2.2045 -0.0062 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3632 0.8899 0.5139 33 1 1.5053 2.0944 -0.2084 34 1 2.9764 1.2552 -0.7609 35 1 2.1749 1.0532 2.1388 36 1 2.9473 2.5468 1.5646 37 1 4.6656 1.0919 2.3905 38 1 4.7990 1.1674 0.6272 39 1 3.4371 -1.0752 2.1463 40 1 5.1177 -1.1180 1.5712 41 1 2.8844 -1.4522 -2.1747 42 1 2.0412 -2.9848 -2.5160 43 1 4.6529 -2.0038 -3.7584 44 1 3.0914 -2.2273 -4.5842 45 1 4.3755 -6.5416 -3.6234 46 1 5.9131 -6.4422 -2.7322 47 1 6.2344 -5.1259 -5.2102 48 1 8.0089 -8.2670 -7.9210 49 1 3.4638 -5.2300 -1.7101 50 1 5.0326 -4.8424 -0.9577 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502085128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:57 Heat of formation + Delta-G solvation = -85.580554 kcal Electronic energy + Delta-G solvation = -31352.657435 eV Core-core repulsion = 27187.869692 eV Total energy + Delta-G solvation = -4164.787742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54279 -39.85926 -38.40110 -37.24331 -35.16580 -35.04452 -34.49750 -32.36428 -31.72889 -30.53337 -29.08576 -28.24922 -26.72464 -25.51310 -24.30742 -23.51587 -22.25002 -21.22546 -21.01735 -20.12189 -18.84504 -18.03970 -17.71591 -17.45405 -16.82879 -16.43402 -15.89910 -15.80495 -15.45024 -15.07776 -14.79045 -14.63759 -14.42524 -14.33145 -14.11559 -14.01484 -13.48466 -13.32853 -13.14274 -13.02156 -12.84926 -12.75357 -12.51952 -12.45557 -12.22484 -12.07260 -11.78902 -11.58177 -11.32185 -11.18950 -11.17651 -11.05161 -10.82169 -10.49140 -10.19576 -10.13745 -9.99424 -9.90441 -9.53672 -9.24100 -8.85876 -8.56657 -7.17587 -5.71138 -3.06113 2.11075 2.19358 2.65106 2.73497 3.42526 3.46716 3.49449 3.81956 3.89900 4.02541 4.09766 4.16941 4.41283 4.53901 4.61967 4.65362 4.68125 4.76701 4.82560 4.84208 4.90594 4.98440 5.03922 5.06612 5.12236 5.24489 5.33209 5.35522 5.38806 5.43715 5.52506 5.55856 5.58837 5.67366 5.71729 5.78341 5.81314 5.83975 5.90251 6.00764 6.26986 6.50294 6.64521 6.78244 7.19992 7.33582 7.67649 7.95699 8.04451 8.47597 9.26833 9.99149 10.19644 11.47289 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.002584 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.888036 B =10833.625923 C =10962.085599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.612 5.612 3 C 0.106 3.894 4 C -0.143 4.143 5 C -0.123 4.123 6 C -0.100 4.100 7 C -0.129 4.129 8 H 0.118 0.882 9 C 0.540 3.460 10 O -0.532 6.532 11 N -0.600 5.600 12 C 0.081 3.919 13 C 0.044 3.956 14 O -0.360 6.360 15 C 0.070 3.930 16 H 0.063 0.937 17 C 0.168 3.832 18 N -0.751 5.751 19 C -0.242 4.242 20 H 0.091 0.909 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.279 1.279 26 H -0.292 1.292 27 C 0.088 3.912 28 C 0.524 3.476 29 O -0.525 6.525 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.104 0.896 45 H 0.039 0.961 46 H 0.046 0.954 47 H 0.364 0.636 48 H 0.259 0.741 49 H 0.081 0.919 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 27.696 17.703 35.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.345 5.345 3 C -0.017 4.017 4 C -0.181 4.181 5 C -0.160 4.160 6 C -0.138 4.138 7 C -0.153 4.153 8 H 0.135 0.865 9 C 0.327 3.673 10 O -0.408 6.408 11 N -0.333 5.333 12 C -0.042 4.042 13 C -0.034 4.034 14 O -0.278 6.278 15 C 0.011 3.989 16 H 0.081 0.919 17 C 0.040 3.960 18 N -0.396 5.396 19 C -0.371 4.371 20 H 0.109 0.891 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.718 3.282 24 H -0.210 1.210 25 H -0.205 1.205 26 H -0.218 1.218 27 C -0.035 4.035 28 C 0.310 3.690 29 O -0.401 6.401 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.122 0.878 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.197 0.803 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.744 26.465 17.958 34.810 hybrid contribution 0.266 1.514 -0.587 1.646 sum -13.478 27.979 17.371 35.584 Atomic orbital electron populations 1.21718 0.78662 1.03376 1.02212 1.47720 1.07263 1.06127 1.73426 1.21939 0.96755 0.85139 0.97831 1.21848 0.97318 1.01577 0.97344 1.21201 0.97103 0.94452 1.03291 1.21176 1.04054 0.95465 0.93090 1.21761 0.93895 0.97241 1.02385 0.86472 1.19691 0.79622 0.86783 0.81207 1.90696 1.39366 1.65842 1.44930 1.47917 1.51797 1.16573 1.17013 1.22439 0.95684 0.97483 0.88628 1.22961 0.99207 0.85265 0.95932 1.88143 1.65469 1.24140 1.50058 1.22890 0.91514 0.97372 0.87143 0.91883 1.20605 0.95844 0.90034 0.89521 1.42568 1.67832 1.05813 1.23416 1.19061 1.28870 0.86005 1.03210 0.89120 1.24655 1.00582 0.96366 0.97607 1.69703 1.44084 1.24198 1.20342 0.86497 0.77629 0.84488 0.79606 1.21032 1.20501 1.21850 1.22336 1.00814 0.82400 0.97924 1.19891 0.88989 0.83709 0.76421 1.90805 1.69317 1.31114 1.48867 0.92337 0.90306 0.91052 0.89147 0.90386 0.91014 0.90199 0.90847 0.91517 0.91115 0.88666 0.90512 0.89810 0.92965 0.87752 0.94282 0.93676 0.80344 0.93106 0.90066 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.35 59.85 0.62 1.08 16 2 N -0.61 -4.06 2.86 -181.11 -0.52 -4.57 16 3 C 0.11 0.36 5.87 -3.67 -0.02 0.34 16 4 C -0.14 -0.49 5.73 -27.36 -0.16 -0.65 16 5 C -0.12 -0.58 5.28 -27.96 -0.15 -0.73 16 6 C -0.10 -0.83 4.79 -27.31 -0.13 -0.96 16 7 C -0.13 -1.23 1.41 -92.54 -0.13 -1.36 16 8 H 0.12 0.81 6.29 -51.93 -0.33 0.48 16 9 C 0.54 7.50 6.50 -10.99 -0.07 7.43 16 10 O -0.53 -9.00 14.97 5.56 0.08 -8.92 16 11 N -0.60 -8.30 2.88 -172.26 -0.50 -8.79 16 12 C 0.08 0.93 5.13 -3.53 -0.02 0.91 16 13 C 0.04 0.54 6.98 37.31 0.26 0.80 16 14 O -0.36 -6.11 10.33 -35.23 -0.36 -6.48 16 15 C 0.07 1.18 2.81 -26.56 -0.07 1.10 16 16 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 17 C 0.17 3.42 5.93 -4.04 -0.02 3.39 16 18 N -0.75 -18.81 5.35 -59.91 -0.32 -19.13 16 19 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 20 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.94 -30.08 13.97 55.49 0.78 -29.31 16 23 Si 0.89 22.89 27.74 -169.99 -4.71 18.17 16 24 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 C 0.09 1.34 5.93 -3.52 -0.02 1.32 16 28 C 0.52 5.28 4.82 -11.25 -0.05 5.23 16 29 O -0.53 -7.44 14.56 5.56 0.08 -7.36 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.59 7.38 -51.93 -0.38 0.21 16 32 H 0.07 0.21 8.03 -51.93 -0.42 -0.20 16 33 H 0.09 0.13 7.92 -51.93 -0.41 -0.28 16 34 H 0.08 0.22 6.73 -51.93 -0.35 -0.13 16 35 H 0.07 0.34 8.05 -51.93 -0.42 -0.08 16 36 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.26 7.87 -51.93 -0.41 -0.15 16 39 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 40 H 0.09 0.92 7.13 -51.93 -0.37 0.55 16 41 H 0.08 0.69 5.20 -51.93 -0.27 0.42 16 42 H 0.08 1.05 8.12 -51.93 -0.42 0.62 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.36 9.01 5.53 -40.82 -0.23 8.78 16 48 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 49 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.10 1.62 7.08 -51.93 -0.37 1.26 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -38.02 383.74 -8.09 -46.11 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.17 Total: 3.83 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -0.22 Total: 10.66 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.56 Total: -61.81 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.20 Total: -22.75 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.71 Total: 18.17 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.02 -8.09 -46.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502085128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.468 kcal (2) G-P(sol) polarization free energy of solvation -38.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds