Wall clock time and date at job start Tue Mar 31 2020 23:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42902 * 109.47566 * 2 1 4 4 C 1.42903 * 114.00444 * 184.29440 * 3 2 1 5 5 H 1.09004 * 109.46546 * 30.16077 * 4 3 2 6 6 C 1.50702 * 109.46749 * 270.16557 * 4 3 2 7 7 O 1.21280 * 120.00130 * 359.97438 * 6 4 3 8 8 N 1.34774 * 119.99660 * 180.27652 * 6 4 3 9 9 C 1.47433 * 125.65006 * 359.74442 * 8 6 4 10 10 C 1.54909 * 104.83190 * 204.09350 * 9 8 6 11 11 C 1.55153 * 101.58362 * 322.99159 * 10 9 8 12 12 H 1.09000 * 110.71755 * 277.13854 * 11 10 9 13 13 N 1.46898 * 110.72331 * 154.04106 * 11 10 9 14 14 C 1.46904 * 110.99969 * 86.45306 * 13 11 10 15 15 C 1.50690 * 109.47280 * 180.02562 * 14 13 11 16 16 O 1.21294 * 120.00287 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00058 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99850 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00024 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99590 * 179.97438 * 18 17 15 21 21 N 1.31404 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99739 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47132 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46617 * 120.00236 * 22 20 18 25 25 H 1.48498 * 109.46964 * 240.00384 * 22 20 18 26 26 C 1.47024 * 125.64893 * 179.43984 * 8 6 4 27 27 C 1.52998 * 109.47259 * 150.16150 * 4 3 2 28 28 C 1.52998 * 117.49826 * 3.32255 * 27 4 3 29 29 C 1.52994 * 117.50035 * 294.66501 * 27 4 3 30 30 H 1.09008 * 109.47416 * 300.00290 * 1 2 3 31 31 H 1.08999 * 109.47600 * 60.00121 * 1 2 3 32 32 H 1.09002 * 109.47303 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47416 * 239.99710 * 2 1 3 34 34 H 1.08999 * 109.47600 * 119.99879 * 2 1 3 35 35 H 1.09001 * 110.36038 * 322.93290 * 9 8 6 36 36 H 1.09002 * 110.36601 * 85.14304 * 9 8 6 37 37 H 1.09000 * 111.00225 * 81.06736 * 10 9 8 38 38 H 1.09001 * 111.00523 * 204.91352 * 10 9 8 39 39 H 1.00904 * 110.99857 * 322.50437 * 13 11 10 40 40 H 1.09011 * 109.46750 * 300.00656 * 14 13 11 41 41 H 1.08999 * 109.47023 * 60.00141 * 14 13 11 42 42 H 0.96999 * 119.99884 * 359.97438 * 17 15 14 43 43 H 0.97006 * 120.00383 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.87918 * 298.39583 * 26 8 6 45 45 H 1.08998 * 109.87830 * 59.55866 * 26 8 6 46 46 H 1.08997 * 115.54765 * 148.99010 * 27 4 3 47 47 H 1.09003 * 117.50283 * 359.97438 * 28 27 4 48 48 H 1.08997 * 117.49999 * 145.02128 * 28 27 4 49 49 H 1.09000 * 117.49812 * 214.98354 * 29 27 4 50 50 H 1.09005 * 117.50339 * 359.97277 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4275 1.4613 -0.0978 5 1 3.8214 0.6177 -0.6646 6 6 4.0275 1.4618 1.2846 7 8 3.3090 1.3737 2.2577 8 7 5.3622 1.5664 1.4398 9 6 6.3477 1.6808 0.3492 10 6 7.6733 1.1570 0.9559 11 6 7.5836 1.6923 2.4094 12 1 7.9159 2.7292 2.4596 13 7 8.3698 0.8518 3.3223 14 6 9.7722 1.2873 3.3626 15 6 10.5458 0.4034 4.3066 16 8 9.9842 -0.5007 4.8884 17 7 11.8617 0.6175 4.5046 18 6 12.5655 -0.1869 5.3631 19 1 12.0654 -0.9919 5.8811 20 6 13.9222 0.0335 5.5668 21 7 14.5305 1.0133 4.9369 22 14 14.8811 -1.0622 6.7371 23 1 13.9718 -2.0834 7.3162 24 1 15.9764 -1.7382 5.9967 25 1 15.4574 -0.2361 7.8283 26 6 6.0762 1.5914 2.7248 27 6 3.7865 2.7668 -0.8102 28 6 2.6374 3.7009 -1.1947 29 6 3.3743 2.9078 -2.2768 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 6.0486 1.0642 -0.4985 36 1 6.4542 2.7212 0.0418 37 1 7.7056 0.0675 0.9421 38 1 8.5341 1.5784 0.4367 39 1 8.3008 -0.1220 3.0671 40 1 10.2033 1.2168 2.3638 41 1 9.8223 2.3199 3.7078 42 1 12.3108 1.3403 4.0391 43 1 15.4777 1.1670 5.0788 44 1 5.7588 2.4556 3.3083 45 1 5.8757 0.6740 3.2781 46 1 4.7273 3.2252 -0.5056 47 1 1.6256 3.3853 -0.9405 48 1 2.8224 4.7739 -1.1435 49 1 4.0437 3.4591 -2.9370 50 1 2.8475 2.0702 -2.7344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566766076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:20 Heat of formation + Delta-G solvation = -81.827178 kcal Electronic energy + Delta-G solvation = -29428.516025 eV Core-core repulsion = 25263.891041 eV Total energy + Delta-G solvation = -4164.624984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.72820 -39.04065 -38.20488 -37.43973 -36.63880 -34.77126 -33.82614 -31.74819 -31.28906 -30.75296 -29.53462 -27.90627 -25.95809 -24.04292 -23.48166 -23.29939 -22.58420 -21.28624 -21.05233 -19.82579 -19.31479 -17.96480 -17.72142 -17.24760 -16.38399 -16.19433 -16.02666 -15.87022 -15.45800 -15.10368 -14.65358 -14.53693 -14.34552 -13.96551 -13.73046 -13.68226 -13.34125 -13.23585 -12.86250 -12.84903 -12.60385 -12.46340 -12.19321 -12.15255 -11.87895 -11.75245 -11.60977 -11.58606 -11.49194 -11.41013 -11.08688 -11.01464 -10.95289 -10.61547 -10.52930 -10.36135 -10.25073 -9.54951 -9.45224 -8.85506 -8.52692 -8.13419 -7.99258 -6.44668 -3.85443 2.32114 2.60031 3.14608 3.21541 3.25583 3.32932 3.47690 3.86533 3.97736 4.04556 4.19731 4.25886 4.36973 4.47149 4.56285 4.65119 4.70952 4.77675 4.82116 4.88907 5.02874 5.04348 5.07004 5.11281 5.16146 5.21566 5.25561 5.29746 5.34242 5.50563 5.54502 5.61297 5.67485 5.70209 5.72623 5.79416 5.83340 5.88981 5.90752 5.92495 6.05445 6.22759 6.70591 7.10850 7.26802 7.52928 7.53489 7.96155 8.03469 8.57869 9.15167 9.50864 10.02069 10.73021 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.001783 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.316764 B =15696.860888 C =16345.798322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.112 3.888 5 H 0.088 0.912 6 C 0.509 3.491 7 O -0.522 6.522 8 N -0.617 5.617 9 C 0.101 3.899 10 C -0.169 4.169 11 C 0.081 3.919 12 H 0.095 0.905 13 N -0.658 5.658 14 C 0.052 3.948 15 C 0.439 3.561 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.115 3.885 27 C -0.167 4.167 28 C -0.157 4.157 29 C -0.169 4.169 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.353 0.647 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.122 0.878 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.590 4.755 -18.867 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.050 3.950 5 H 0.106 0.894 6 C 0.296 3.704 7 O -0.397 6.397 8 N -0.354 5.354 9 C -0.022 4.022 10 C -0.209 4.209 11 C -0.031 4.031 12 H 0.113 0.887 13 N -0.289 5.289 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.008 4.008 27 C -0.185 4.185 28 C -0.194 4.194 29 C -0.206 4.206 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.174 0.826 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.139 0.861 47 H 0.127 0.873 48 H 0.112 0.888 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.570 4.635 -17.338 28.060 hybrid contribution 1.558 -0.558 -0.588 1.756 sum -20.012 4.078 -17.925 27.174 Atomic orbital electron populations 1.21707 0.93319 1.02355 1.03164 1.22616 0.96014 0.83395 1.00264 1.87976 1.18102 1.26823 1.94179 1.21284 0.83192 0.98433 0.92054 0.89447 1.20919 0.80584 0.76772 0.92093 1.90733 1.59260 1.48647 1.41101 1.48545 1.05302 1.72961 1.08570 1.22387 0.88354 1.01111 0.90385 1.23627 0.97048 1.02082 0.98173 1.22605 0.92878 0.98611 0.89030 0.88674 1.59948 1.09558 1.07438 1.51994 1.21687 0.88042 1.00018 0.98264 1.19788 0.83020 0.87774 0.86947 1.90537 1.69054 1.34624 1.52467 1.41864 1.06973 1.30678 1.40454 1.19760 0.91092 1.11815 1.20205 0.87840 1.25265 0.96927 0.97376 0.98375 1.69614 1.11551 1.30322 1.42787 0.85798 0.79261 0.79673 0.79610 1.19203 1.20774 1.20714 1.21912 0.90468 1.03403 0.84985 1.22373 1.01103 0.97070 0.97957 1.22898 0.97798 0.97012 1.01691 1.22985 1.03741 1.03411 0.90436 0.91535 0.91979 0.91002 0.93420 0.92733 0.90538 0.90870 0.90108 0.89427 0.82590 0.93626 0.89426 0.77459 0.91907 0.90859 0.90250 0.86062 0.87329 0.88757 0.88364 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.15 0.38 -0.68 16 2 C 0.05 0.47 6.47 37.15 0.24 0.71 16 3 O -0.35 -3.74 7.89 -55.14 -0.44 -4.18 16 4 C 0.11 1.05 2.22 -27.88 -0.06 0.99 16 5 H 0.09 0.65 7.44 -51.93 -0.39 0.27 16 6 C 0.51 6.39 7.23 -10.99 -0.08 6.31 16 7 O -0.52 -8.82 16.80 -14.35 -0.24 -9.06 16 8 N -0.62 -6.64 3.29 -170.51 -0.56 -7.20 16 9 C 0.10 0.75 5.36 -2.52 -0.01 0.73 16 10 C -0.17 -1.44 6.63 -24.59 -0.16 -1.60 16 11 C 0.08 0.89 3.22 -65.87 -0.21 0.68 16 12 H 0.10 0.97 7.89 -51.93 -0.41 0.56 16 13 N -0.66 -9.94 5.92 -106.05 -0.63 -10.56 16 14 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 15 C 0.44 10.10 7.82 -10.99 -0.09 10.01 16 16 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 17 N -0.56 -13.97 5.29 -10.97 -0.06 -14.03 16 18 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 22 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.12 1.41 6.64 -3.06 -0.02 1.39 16 27 C -0.17 -1.26 5.13 -90.62 -0.46 -1.73 16 28 C -0.16 -1.18 9.87 -26.70 -0.26 -1.44 16 29 C -0.17 -1.00 10.24 -26.70 -0.27 -1.27 16 30 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.32 7.99 -51.92 -0.41 -0.09 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.45 7.46 -51.93 -0.39 0.06 16 36 H 0.07 0.44 6.91 -51.93 -0.36 0.08 16 37 H 0.08 0.74 7.82 -51.93 -0.41 0.33 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.35 5.57 8.00 -39.29 -0.31 5.26 16 40 H 0.05 0.65 8.13 -51.92 -0.42 0.23 16 41 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 42 H 0.39 9.24 7.90 -40.82 -0.32 8.91 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.13 8.03 -51.93 -0.42 0.72 16 46 H 0.12 0.85 5.66 -51.93 -0.29 0.55 16 47 H 0.11 0.95 7.02 -51.93 -0.36 0.58 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 408.30 15.07 6.15 6.15 Total: -1.00 -33.98 408.30 -9.50 -43.48 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -8.23 Total: 11.55 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -1.29 Total: 7.01 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.52 Total: -55.26 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.59 Total: -28.80 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.98 -9.50 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566766076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.347 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds