Wall clock time and date at job start Tue Mar 31 2020 23:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42902 * 109.47566 * 2 1 4 4 C 1.42903 * 114.00444 * 184.29440 * 3 2 1 5 5 H 1.09004 * 109.46546 * 30.16077 * 4 3 2 6 6 C 1.50702 * 109.46749 * 270.16557 * 4 3 2 7 7 O 1.21280 * 120.00130 * 359.97438 * 6 4 3 8 8 N 1.34774 * 119.99660 * 180.27652 * 6 4 3 9 9 C 1.47433 * 125.65006 * 359.74442 * 8 6 4 10 10 C 1.54909 * 104.83190 * 204.09350 * 9 8 6 11 11 C 1.55153 * 101.58362 * 322.99159 * 10 9 8 12 12 H 1.09000 * 110.71755 * 277.13854 * 11 10 9 13 13 N 1.46898 * 110.72331 * 154.04106 * 11 10 9 14 14 C 1.46904 * 110.99969 * 86.45306 * 13 11 10 15 15 C 1.50690 * 109.47280 * 180.02562 * 14 13 11 16 16 O 1.21294 * 120.00287 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00058 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99850 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00024 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99590 * 179.97438 * 18 17 15 21 21 N 1.31404 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99739 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47132 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46617 * 120.00236 * 22 20 18 25 25 H 1.48498 * 109.46964 * 240.00384 * 22 20 18 26 26 C 1.47024 * 125.64893 * 179.43984 * 8 6 4 27 27 C 1.52998 * 109.47259 * 150.16150 * 4 3 2 28 28 C 1.52998 * 117.49826 * 3.32255 * 27 4 3 29 29 C 1.52994 * 117.50035 * 294.66501 * 27 4 3 30 30 H 1.09008 * 109.47416 * 300.00290 * 1 2 3 31 31 H 1.08999 * 109.47600 * 60.00121 * 1 2 3 32 32 H 1.09002 * 109.47303 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47416 * 239.99710 * 2 1 3 34 34 H 1.08999 * 109.47600 * 119.99879 * 2 1 3 35 35 H 1.09001 * 110.36038 * 322.93290 * 9 8 6 36 36 H 1.09002 * 110.36601 * 85.14304 * 9 8 6 37 37 H 1.09000 * 111.00225 * 81.06736 * 10 9 8 38 38 H 1.09001 * 111.00523 * 204.91352 * 10 9 8 39 39 H 1.00904 * 110.99857 * 322.50437 * 13 11 10 40 40 H 1.09011 * 109.46750 * 300.00656 * 14 13 11 41 41 H 1.08999 * 109.47023 * 60.00141 * 14 13 11 42 42 H 0.96999 * 119.99884 * 359.97438 * 17 15 14 43 43 H 0.97006 * 120.00383 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.87918 * 298.39583 * 26 8 6 45 45 H 1.08998 * 109.87830 * 59.55866 * 26 8 6 46 46 H 1.08997 * 115.54765 * 148.99010 * 27 4 3 47 47 H 1.09003 * 117.50283 * 359.97438 * 28 27 4 48 48 H 1.08997 * 117.49999 * 145.02128 * 28 27 4 49 49 H 1.09000 * 117.49812 * 214.98354 * 29 27 4 50 50 H 1.09005 * 117.50339 * 359.97277 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4275 1.4613 -0.0978 5 1 3.8214 0.6177 -0.6646 6 6 4.0275 1.4618 1.2846 7 8 3.3090 1.3737 2.2577 8 7 5.3622 1.5664 1.4398 9 6 6.3477 1.6808 0.3492 10 6 7.6733 1.1570 0.9559 11 6 7.5836 1.6923 2.4094 12 1 7.9159 2.7292 2.4596 13 7 8.3698 0.8518 3.3223 14 6 9.7722 1.2873 3.3626 15 6 10.5458 0.4034 4.3066 16 8 9.9842 -0.5007 4.8884 17 7 11.8617 0.6175 4.5046 18 6 12.5655 -0.1869 5.3631 19 1 12.0654 -0.9919 5.8811 20 6 13.9222 0.0335 5.5668 21 7 14.5305 1.0133 4.9369 22 14 14.8811 -1.0622 6.7371 23 1 13.9718 -2.0834 7.3162 24 1 15.9764 -1.7382 5.9967 25 1 15.4574 -0.2361 7.8283 26 6 6.0762 1.5914 2.7248 27 6 3.7865 2.7668 -0.8102 28 6 2.6374 3.7009 -1.1947 29 6 3.3743 2.9078 -2.2768 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 6.0486 1.0642 -0.4985 36 1 6.4542 2.7212 0.0418 37 1 7.7056 0.0675 0.9421 38 1 8.5341 1.5784 0.4367 39 1 8.3008 -0.1220 3.0671 40 1 10.2033 1.2168 2.3638 41 1 9.8223 2.3199 3.7078 42 1 12.3108 1.3403 4.0391 43 1 15.4777 1.1670 5.0788 44 1 5.7588 2.4556 3.3083 45 1 5.8757 0.6740 3.2781 46 1 4.7273 3.2252 -0.5056 47 1 1.6256 3.3853 -0.9405 48 1 2.8224 4.7739 -1.1435 49 1 4.0437 3.4591 -2.9370 50 1 2.8475 2.0702 -2.7344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566766076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:20 Heat of formation + Delta-G solvation = -106.030716 kcal Electronic energy + Delta-G solvation = -29429.565569 eV Core-core repulsion = 25263.891041 eV Total energy + Delta-G solvation = -4165.674528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58294 -40.25880 -39.54611 -38.43957 -37.27538 -36.18480 -35.54979 -33.27337 -32.42965 -31.72288 -30.35467 -28.92192 -27.44333 -25.59952 -24.34330 -23.92633 -23.08589 -21.95526 -21.89529 -21.13313 -20.63023 -19.92361 -18.58432 -18.06469 -17.72910 -17.12655 -16.94773 -16.81594 -16.64149 -16.34133 -15.97501 -15.79458 -15.33118 -15.23898 -15.16028 -14.67160 -14.19272 -14.11570 -13.98196 -13.75722 -13.57363 -13.49152 -13.43955 -13.18294 -12.98189 -12.87723 -12.72459 -12.45954 -12.40156 -12.39632 -12.23495 -12.17314 -12.11852 -11.79655 -11.68527 -11.51469 -11.24737 -11.08798 -10.38126 -10.27655 -10.01029 -9.76573 -9.31656 -8.46932 -5.95195 1.36414 1.41978 1.42352 1.55807 1.74029 2.05887 2.29296 2.54697 2.90134 2.92740 3.20620 3.30592 3.43001 3.59486 3.70027 3.81309 3.88838 4.05131 4.09855 4.10867 4.20261 4.24059 4.26617 4.32299 4.36401 4.42260 4.48472 4.51521 4.60685 4.65783 4.76672 4.80218 4.81295 4.87631 4.98159 4.99796 5.02518 5.08170 5.20425 5.21478 5.25151 5.37361 5.41598 5.89017 6.01086 6.10095 6.33370 6.41600 6.60711 7.03552 7.13351 7.57018 8.12864 8.70440 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.001783 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.316764 B =15696.860888 C =16345.798322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.370 6.370 4 C 0.115 3.885 5 H 0.112 0.888 6 C 0.500 3.500 7 O -0.580 6.580 8 N -0.612 5.612 9 C 0.100 3.900 10 C -0.160 4.160 11 C 0.086 3.914 12 H 0.113 0.887 13 N -0.679 5.679 14 C 0.070 3.930 15 C 0.435 3.565 16 O -0.627 6.627 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.276 1.276 24 H -0.269 1.269 25 H -0.272 1.272 26 C 0.116 3.884 27 C -0.174 4.174 28 C -0.174 4.174 29 C -0.144 4.144 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.347 0.653 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.398 0.602 43 H 0.278 0.722 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.131 0.869 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.119 0.881 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.672 5.635 -21.812 29.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 O -0.288 6.288 4 C 0.054 3.946 5 H 0.129 0.871 6 C 0.290 3.710 7 O -0.460 6.460 8 N -0.348 5.348 9 C -0.022 4.022 10 C -0.200 4.200 11 C -0.025 4.025 12 H 0.131 0.869 13 N -0.310 5.310 14 C -0.062 4.062 15 C 0.223 3.777 16 O -0.514 6.514 17 N -0.209 5.209 18 C -0.464 4.464 19 H 0.094 0.906 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.008 4.008 27 C -0.192 4.192 28 C -0.211 4.211 29 C -0.180 4.180 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.166 0.834 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.149 0.851 47 H 0.109 0.891 48 H 0.120 0.880 49 H 0.137 0.863 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.624 5.552 -20.338 29.493 hybrid contribution 1.208 -0.833 0.347 1.508 sum -19.416 4.719 -19.991 28.265 Atomic orbital electron populations 1.21715 0.92369 1.03412 1.02727 1.22751 0.96924 0.82829 1.00289 1.87974 1.18941 1.27829 1.94092 1.21425 0.82559 1.00465 0.90137 0.87099 1.21701 0.80757 0.75634 0.92942 1.90699 1.60725 1.51426 1.43124 1.48611 1.05406 1.71749 1.09000 1.22684 0.86585 1.03209 0.89721 1.23582 0.98607 1.01751 0.96056 1.22593 0.90931 0.98865 0.90086 0.86918 1.59870 1.09196 1.07626 1.54340 1.21531 0.87885 0.98921 0.97857 1.20978 0.82560 0.87524 0.86652 1.90508 1.69850 1.36774 1.54270 1.41917 1.07751 1.30726 1.40532 1.19676 0.92120 1.12580 1.21975 0.90557 1.25993 0.97158 0.98492 0.99487 1.69661 1.12099 1.30890 1.43238 0.84902 0.77818 0.77923 0.77881 1.20044 1.19464 1.19685 1.21767 0.91885 1.01368 0.85791 1.22400 1.01345 0.96134 0.99306 1.22913 0.97056 0.97615 1.03471 1.23065 1.02718 1.02794 0.89466 0.93334 0.90979 0.89219 0.90870 0.95082 0.88106 0.88288 0.90851 0.86971 0.83374 0.90359 0.87477 0.76802 0.91283 0.92051 0.93251 0.85121 0.89140 0.88026 0.86284 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 0.83 6.47 71.98 0.47 1.30 16 3 O -0.37 -7.77 7.89 -129.94 -1.03 -8.80 16 4 C 0.12 2.01 2.22 29.85 0.07 2.08 16 5 H 0.11 1.37 7.44 -2.39 -0.02 1.35 16 6 C 0.50 12.60 7.23 87.66 0.63 13.23 16 7 O -0.58 -20.76 16.80 16.01 0.27 -20.49 16 8 N -0.61 -12.60 3.29 -811.75 -2.67 -15.27 16 9 C 0.10 1.13 5.36 86.85 0.47 1.59 16 10 C -0.16 -2.20 6.63 31.98 0.21 -1.99 16 11 C 0.09 1.75 3.22 46.11 0.15 1.90 16 12 H 0.11 1.95 7.89 -2.39 -0.02 1.93 16 13 N -0.68 -20.00 5.92 -489.43 -2.90 -22.90 16 14 C 0.07 2.17 6.02 85.55 0.52 2.69 16 15 C 0.44 20.11 7.82 87.65 0.69 20.79 16 16 O -0.63 -34.67 15.78 -3.07 -0.05 -34.72 16 17 N -0.57 -28.60 5.29 -306.99 -1.62 -30.23 16 18 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -48.59 13.05 21.66 0.28 -48.30 16 22 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 C 0.12 2.86 6.64 86.73 0.58 3.44 16 27 C -0.17 -2.20 5.13 -10.80 -0.06 -2.25 16 28 C -0.17 -2.32 9.87 30.62 0.30 -2.02 16 29 C -0.14 -1.21 10.24 30.61 0.31 -0.90 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.86 7.99 -2.38 -0.02 0.84 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.10 0.73 7.46 -2.39 -0.02 0.71 16 36 H 0.10 0.71 6.91 -2.39 -0.02 0.69 16 37 H 0.07 1.16 7.82 -2.39 -0.02 1.14 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.35 10.96 8.00 -89.69 -0.72 10.24 16 40 H 0.08 1.96 8.13 -2.38 -0.02 1.94 16 41 H 0.11 2.96 8.08 -2.39 -0.02 2.94 16 42 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 43 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.51 8.03 -2.39 -0.02 1.49 16 46 H 0.13 1.38 5.66 -2.39 -0.01 1.36 16 47 H 0.09 1.55 7.02 -2.39 -0.02 1.53 16 48 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -78.05 408.30 0.17 -77.88 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.49 Total: 37.71 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 6.35 Total: 20.44 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -6.91 Total: -116.71 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -0.81 Total: -64.01 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -78.05 0.17 -77.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566766076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.152 kcal (2) G-P(sol) polarization free energy of solvation -78.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds