Wall clock time and date at job start Tue Mar 31 2020 23:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 119.99836 * 2 1 4 4 N 1.34770 * 120.00524 * 180.02562 * 2 1 3 5 5 C 1.46491 * 120.00374 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47272 * 179.97438 * 5 4 2 7 7 H 1.09006 * 110.41318 * 57.70761 * 6 5 4 8 8 C 1.54617 * 110.37042 * 180.02562 * 6 5 4 9 9 C 1.53945 * 103.85539 * 142.73238 * 8 6 5 10 10 C 1.53911 * 104.64813 * 359.81911 * 9 8 6 11 11 O 1.44474 * 110.36859 * 295.40284 * 6 5 4 12 12 C 1.52444 * 110.32188 * 118.52563 * 9 8 6 13 13 C 1.53153 * 109.34733 * 66.30184 * 12 9 8 14 14 N 1.46849 * 109.43687 * 58.13093 * 13 12 9 15 15 C 1.46899 * 111.00066 * 173.57458 * 14 13 12 16 16 C 1.50702 * 109.47159 * 293.61282 * 15 14 13 17 17 O 1.21293 * 120.00196 * 353.72946 * 16 15 14 18 18 N 1.34779 * 119.99713 * 173.73207 * 16 15 14 19 19 C 1.37100 * 119.99582 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00037 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99747 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99939 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99646 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46728 * 179.97438 * 23 21 19 25 25 H 1.48499 * 109.47326 * 299.99315 * 23 21 19 26 26 H 1.48500 * 109.47446 * 59.99740 * 23 21 19 27 27 C 1.46855 * 111.32226 * 297.76246 * 14 13 12 28 28 C 1.52440 * 110.31962 * 241.11554 * 9 8 6 29 29 H 1.08996 * 109.46908 * 239.99363 * 1 2 3 30 30 H 1.08998 * 109.47187 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46944 * 119.99983 * 1 2 3 32 32 H 0.97006 * 119.99926 * 359.97438 * 4 2 1 33 33 H 1.09003 * 109.47166 * 60.00360 * 5 4 2 34 34 H 1.09000 * 109.47650 * 299.99944 * 5 4 2 35 35 H 1.09004 * 110.54900 * 24.13832 * 8 6 5 36 36 H 1.08997 * 110.55110 * 261.32606 * 8 6 5 37 37 H 1.09003 * 110.39009 * 95.24019 * 10 9 8 38 38 H 1.08989 * 110.39852 * 217.64359 * 10 9 8 39 39 H 1.09002 * 109.48723 * 306.34220 * 12 9 8 40 40 H 1.09000 * 109.49322 * 186.26993 * 12 9 8 41 41 H 1.09005 * 109.47552 * 298.14545 * 13 12 9 42 42 H 1.08999 * 109.47693 * 178.12387 * 13 12 9 43 43 H 1.09006 * 109.46790 * 173.61651 * 15 14 13 44 44 H 1.08995 * 109.46832 * 53.61437 * 15 14 13 45 45 H 0.96993 * 120.00103 * 0.02562 * 18 16 15 46 46 H 0.97003 * 120.00082 * 0.02562 * 22 21 19 47 47 H 1.08996 * 109.48138 * 182.22121 * 27 14 13 48 48 H 1.08998 * 109.47560 * 302.24572 * 27 14 13 49 49 H 1.09004 * 109.49292 * 53.65829 * 28 9 8 50 50 H 1.08998 * 109.49058 * 173.72977 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1670 -0.0011 6 6 4.1560 -2.6095 -0.0010 7 1 3.7678 -3.1501 -0.8643 8 6 5.7020 -2.6337 -0.0009 9 6 6.0519 -3.8287 0.9043 10 6 4.6904 -4.3892 1.3528 11 8 3.7763 -3.2770 1.2228 12 6 6.8252 -4.8806 0.1171 13 6 8.1889 -4.3118 -0.2859 14 7 8.9249 -3.9071 0.9187 15 6 10.2959 -3.4981 0.5855 16 6 11.0687 -4.6916 0.0861 17 8 10.5685 -5.7961 0.1213 18 7 12.3157 -4.5317 -0.3996 19 6 13.0186 -5.6175 -0.8544 20 1 12.5732 -6.6008 -0.8231 21 6 14.3044 -5.4527 -1.3547 22 7 14.8465 -4.2563 -1.3923 23 14 15.2618 -6.9319 -1.9750 24 1 16.5970 -6.4921 -2.4536 25 1 15.4290 -7.9116 -0.8716 26 1 14.5204 -7.5679 -3.0935 27 6 8.2193 -2.8420 1.6429 28 6 6.8565 -3.3606 2.1115 29 1 -0.3633 -0.5139 0.8899 30 1 -0.3633 1.0276 0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6960 -2.0072 -0.0005 33 1 4.0096 -0.6534 0.8889 34 1 4.0090 -0.6530 -0.8911 35 1 6.0991 -1.7084 0.4164 36 1 6.0822 -2.7937 -1.0098 37 1 4.3853 -5.2101 0.7038 38 1 4.7393 -4.7214 2.3896 39 1 6.2645 -5.1498 -0.7781 40 1 6.9689 -5.7658 0.7367 41 1 8.0449 -3.4457 -0.9319 42 1 8.7569 -5.0734 -0.8201 43 1 10.7817 -3.0970 1.4751 44 1 10.2683 -2.7327 -0.1899 45 1 12.7158 -3.6486 -0.4274 46 1 14.3492 -3.4881 -1.0705 47 1 8.8092 -2.5378 2.5075 48 1 8.0752 -1.9871 0.9822 49 1 6.3179 -2.5606 2.6195 50 1 7.0013 -4.1950 2.7977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569578167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:03 Heat of formation + Delta-G solvation = -120.512420 kcal Electronic energy + Delta-G solvation = -29993.623254 eV Core-core repulsion = 25827.320753 eV Total energy + Delta-G solvation = -4166.302502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93261 -39.77756 -38.72027 -37.34552 -35.16005 -34.38577 -33.59323 -31.71079 -31.10214 -30.91344 -29.83182 -28.45208 -25.90236 -25.56493 -23.88408 -23.30010 -21.94381 -21.59725 -20.90148 -19.59992 -18.69149 -17.89486 -17.33157 -17.00672 -16.47436 -16.25974 -15.96854 -15.57498 -15.39585 -15.09976 -15.03618 -14.51961 -14.26295 -14.02378 -13.81439 -13.71412 -13.50528 -13.39665 -13.16735 -12.98649 -12.60762 -12.48130 -12.43403 -12.18950 -11.99640 -11.75166 -11.63884 -11.28978 -11.21419 -11.16527 -10.94626 -10.74677 -10.45501 -10.29444 -10.21418 -10.19577 -9.96290 -9.86121 -9.50433 -9.46122 -8.48853 -8.04142 -7.91213 -6.75449 -3.88606 2.29840 2.82366 3.30413 3.34156 3.49663 3.54421 3.84669 3.91223 4.15246 4.30784 4.35496 4.45632 4.50823 4.62614 4.70546 4.83313 4.88040 4.92780 4.95338 5.06334 5.16475 5.22376 5.22957 5.29880 5.32868 5.40312 5.46082 5.47338 5.48397 5.58311 5.60869 5.65443 5.69855 5.78913 5.84035 5.91785 6.01194 6.03028 6.04148 6.11160 6.28305 6.36721 6.50938 7.12709 7.21338 7.35893 7.80920 7.86330 8.07870 8.60575 8.80664 9.47856 9.89079 10.67960 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.001909 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.270138 B =14660.649690 C =14990.948837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.508 3.492 3 O -0.550 6.550 4 N -0.727 5.727 5 C 0.126 3.874 6 C 0.064 3.936 7 H 0.075 0.925 8 C -0.140 4.140 9 C -0.088 4.088 10 C 0.056 3.944 11 O -0.371 6.371 12 C -0.098 4.098 13 C 0.057 3.943 14 N -0.513 5.513 15 C 0.046 3.954 16 C 0.446 3.554 17 O -0.570 6.570 18 N -0.577 5.577 19 C -0.382 4.382 20 H 0.099 0.901 21 C -0.010 4.010 22 N -0.901 5.901 23 Si 1.091 2.909 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.055 3.945 28 C -0.098 4.098 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.405 0.595 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.023 0.977 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.375 0.625 46 H 0.261 0.739 47 H 0.074 0.926 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.664 5.572 3.302 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.427 6.427 4 N -0.379 5.379 5 C 0.002 3.998 6 C 0.006 3.994 7 H 0.093 0.907 8 C -0.178 4.178 9 C -0.089 4.089 10 C -0.020 4.020 11 O -0.290 6.290 12 C -0.136 4.136 13 C -0.071 4.071 14 N -0.238 5.238 15 C -0.085 4.085 16 C 0.232 3.768 17 O -0.453 6.453 18 N -0.216 5.216 19 C -0.511 4.511 20 H 0.116 0.884 21 C -0.212 4.212 22 N -0.541 5.541 23 Si 0.917 3.083 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.073 4.073 28 C -0.135 4.135 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.239 0.761 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.208 0.792 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.048 0.952 49 H 0.087 0.913 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.238 4.750 3.103 24.893 hybrid contribution -1.258 1.271 0.047 1.789 sum -25.496 6.021 3.151 26.386 Atomic orbital electron populations 1.21912 0.91579 1.05551 1.04302 1.20841 0.90714 0.83391 0.75538 1.90737 1.70942 1.31459 1.49580 1.45973 1.07291 1.09007 1.75629 1.21458 0.80064 0.95063 1.03181 1.23259 0.94877 0.92607 0.88691 0.90747 1.23053 0.94042 0.99475 1.01237 1.21530 0.95663 0.95467 0.96220 1.23493 0.87138 0.89101 1.02314 1.89135 1.55493 1.43117 1.41234 1.21498 0.94847 0.97903 0.99363 1.22194 0.94294 0.99674 0.90922 1.61435 1.00728 1.37521 1.24128 1.21841 0.89976 0.96253 1.00426 1.19684 0.82963 0.90035 0.84166 1.90505 1.69145 1.26164 1.59499 1.41962 1.13596 1.09924 1.56099 1.20518 0.99489 0.89858 1.41217 0.88352 1.26498 0.94763 1.03450 0.96518 1.70901 1.39519 0.98883 1.44765 0.83133 0.75794 0.72816 0.76539 1.20433 1.21009 1.21066 1.22142 0.94890 0.92216 0.98099 1.21509 0.94317 1.01340 0.96362 0.89323 0.88966 0.89402 0.76103 0.90591 0.90133 0.90078 0.89893 0.91927 0.88750 0.91668 0.90384 0.95899 0.88509 0.89391 0.93809 0.79227 0.92786 0.90773 0.95178 0.91307 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.32 36.01 0.37 -0.46 16 2 C 0.51 4.60 7.94 -10.99 -0.09 4.52 16 3 O -0.55 -7.60 17.09 5.56 0.09 -7.50 16 4 N -0.73 -5.46 5.52 -60.30 -0.33 -5.80 16 5 C 0.13 1.07 5.29 -4.05 -0.02 1.05 16 6 C 0.06 0.51 3.34 -25.88 -0.09 0.42 16 7 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 8 C -0.14 -1.24 4.91 -25.39 -0.12 -1.37 16 9 C -0.09 -0.87 0.69 -154.11 -0.11 -0.97 16 10 C 0.06 0.49 6.73 37.63 0.25 0.75 16 11 O -0.37 -3.46 11.31 -35.23 -0.40 -3.85 16 12 C -0.10 -1.17 4.58 -26.94 -0.12 -1.29 16 13 C 0.06 0.86 4.93 -3.77 -0.02 0.84 16 14 N -0.51 -8.18 4.33 -235.95 -1.02 -9.20 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 16 C 0.45 10.38 7.31 -10.98 -0.08 10.30 16 17 O -0.57 -15.18 14.29 5.55 0.08 -15.10 16 18 N -0.58 -14.42 5.28 -10.96 -0.06 -14.48 16 19 C -0.38 -10.65 9.68 -14.93 -0.14 -10.80 16 20 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 21 C -0.01 -0.27 5.50 -17.47 -0.10 -0.37 16 22 N -0.90 -25.21 13.68 55.50 0.76 -24.45 16 23 Si 1.09 24.18 29.92 -169.99 -5.09 19.09 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.05 0.67 5.28 -3.77 -0.02 0.65 16 28 C -0.10 -1.03 4.59 -26.94 -0.12 -1.16 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.40 2.13 8.47 -40.82 -0.35 1.79 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.74 6.57 -51.93 -0.34 0.40 16 36 H 0.08 0.74 6.83 -51.93 -0.35 0.39 16 37 H 0.06 0.50 7.85 -51.93 -0.41 0.10 16 38 H 0.09 0.79 7.85 -51.94 -0.41 0.38 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.32 6.95 -51.93 -0.36 -0.04 16 42 H 0.10 1.84 6.05 -51.93 -0.31 1.53 16 43 H 0.09 1.40 7.97 -51.93 -0.41 0.99 16 44 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 45 H 0.37 8.69 6.73 -40.82 -0.27 8.41 16 46 H 0.26 7.02 6.78 -40.82 -0.28 6.74 16 47 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 48 H 0.03 0.35 6.96 -51.93 -0.36 -0.01 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -35.06 392.94 -8.57 -43.63 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.09 Total: 8.84 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.43 Total: 2.90 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.65 Total: -53.92 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.22 Total: -26.46 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.09 Total: 19.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.06 -8.57 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569578167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.886 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds