Wall clock time and date at job start Tue Mar 31 2020 23:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21274 * 120.00094 * 2 1 4 4 N 1.34772 * 119.99601 * 180.02562 * 2 1 3 5 5 C 1.46929 * 120.62903 * 179.97438 * 4 2 1 6 6 C 1.53192 * 108.77246 * 126.41231 * 5 4 2 7 7 C 1.53042 * 109.31156 * 54.64296 * 6 5 4 8 8 C 1.50703 * 109.45990 * 178.62551 * 7 6 5 9 9 O 1.21278 * 119.99819 * 0.02618 * 8 7 6 10 10 N 1.34778 * 120.00149 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00125 * 174.80088 * 10 8 7 12 12 C 1.53004 * 112.94240 * 295.31193 * 11 10 8 13 13 C 1.53004 * 109.46822 * 304.23385 * 12 11 10 14 14 O 1.42901 * 109.46720 * 178.39104 * 13 12 11 15 15 C 1.53948 * 113.74161 * 163.71792 * 11 10 8 16 16 N 1.47807 * 86.03253 * 222.08107 * 15 11 10 17 17 C 1.36937 * 134.45496 * 204.63720 * 16 15 11 18 18 H 1.08001 * 120.00377 * 179.86917 * 17 16 15 19 19 C 1.38812 * 120.00074 * 359.87622 * 17 16 15 20 20 N 1.31622 * 120.00064 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46943 * 60.00365 * 21 19 17 23 23 H 1.48503 * 109.47350 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47573 * 300.00284 * 21 19 17 25 25 C 1.47583 * 91.05572 * 24.55215 * 16 15 11 26 26 C 1.53047 * 109.53636 * 298.62638 * 7 6 5 27 27 C 1.46934 * 120.63330 * 0.02562 * 4 2 1 28 28 H 1.09001 * 109.47205 * 239.99769 * 1 2 3 29 29 H 1.09005 * 109.46850 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47289 * 119.99700 * 1 2 3 31 31 H 1.08997 * 109.58360 * 6.62605 * 5 4 2 32 32 H 1.08999 * 109.70320 * 246.26693 * 5 4 2 33 33 H 1.08997 * 109.50490 * 294.68311 * 6 5 4 34 34 H 1.09005 * 109.49454 * 174.58503 * 6 5 4 35 35 H 1.08991 * 109.46765 * 58.64943 * 7 6 5 36 36 H 0.97001 * 119.99611 * 354.79775 * 10 8 7 37 37 H 1.09001 * 109.47109 * 64.22909 * 12 11 10 38 38 H 1.08998 * 109.47075 * 184.23311 * 12 11 10 39 39 H 1.09002 * 109.47166 * 298.39200 * 13 12 11 40 40 H 1.09002 * 109.47394 * 58.39016 * 13 12 11 41 41 H 0.96702 * 113.99807 * 179.97438 * 14 13 12 42 42 H 1.08992 * 113.77018 * 336.34892 * 15 11 10 43 43 H 1.08997 * 113.76326 * 107.74548 * 15 11 10 44 44 H 0.97000 * 120.00401 * 179.97438 * 20 19 17 45 45 H 1.08993 * 113.76727 * 221.14730 * 25 16 15 46 46 H 1.08994 * 113.86888 * 89.76068 * 25 16 15 47 47 H 1.08996 * 109.49700 * 181.32093 * 26 7 6 48 48 H 1.08998 * 109.49591 * 301.42350 * 26 7 6 49 49 H 1.09000 * 109.58347 * 353.37326 * 27 4 2 50 50 H 1.08997 * 109.58217 * 113.65898 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6500 -1.1834 -0.0011 6 6 4.1339 -2.0501 1.1658 7 6 3.4901 -3.4351 1.0686 8 6 3.9900 -4.3013 2.1960 9 8 4.7824 -3.8549 2.9982 10 7 3.5563 -5.5721 2.3127 11 6 4.1263 -6.4493 3.3383 12 6 5.6120 -6.7397 3.1162 13 6 5.8133 -7.3275 1.7180 14 8 7.2051 -7.5638 1.4965 15 6 3.2836 -7.7073 3.6160 16 7 3.5672 -7.4568 5.0448 17 6 3.6107 -8.2419 6.1659 18 1 3.8522 -7.8037 7.1230 19 6 3.3445 -9.6010 6.0722 20 7 3.0507 -10.1353 4.9057 21 14 3.4044 -10.6722 7.6014 22 1 2.4118 -10.1796 8.5900 23 1 3.0849 -12.0756 7.2357 24 1 4.7647 -10.6131 8.1942 25 6 3.7867 -6.0221 4.7778 26 6 1.9687 -3.3002 1.1657 27 6 1.4602 -2.4477 -0.0017 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 4.0267 -0.1675 0.1175 32 1 4.0126 -1.6003 -0.9407 33 1 3.8503 -1.5823 2.1085 34 1 5.2185 -2.1491 1.1200 35 1 3.7539 -3.8922 0.1150 36 1 2.8668 -5.9058 1.7176 37 1 6.1806 -5.8141 3.2064 38 1 5.9585 -7.4533 3.8637 39 1 5.2677 -8.2676 1.6371 40 1 5.4406 -6.6258 0.9717 41 1 7.4072 -7.9375 0.6278 42 1 2.2319 -7.5989 3.3512 43 1 3.7273 -8.6265 3.2334 44 1 2.8651 -11.0851 4.8401 45 1 4.6312 -5.5983 5.3211 46 1 2.8841 -5.4160 4.8548 47 1 1.5122 -4.2889 1.1200 48 1 1.7055 -2.8205 2.1085 49 1 0.3920 -2.2658 0.1166 50 1 1.6405 -2.9675 -0.9425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675110753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:11 Heat of formation + Delta-G solvation = -71.265873 kcal Electronic energy + Delta-G solvation = -30900.019041 eV Core-core repulsion = 26735.852030 eV Total energy + Delta-G solvation = -4164.167011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.72692 -39.88949 -38.29894 -36.96844 -36.41519 -33.77598 -33.32404 -32.11583 -31.51366 -30.29427 -29.72684 -27.22638 -26.05329 -25.09396 -23.58696 -23.38899 -22.20134 -21.38479 -20.13591 -19.25474 -18.67560 -17.62581 -17.12317 -16.83937 -16.75263 -16.16311 -15.79381 -15.52687 -15.04325 -14.77779 -14.72454 -14.38306 -14.08900 -14.02880 -13.80694 -13.65748 -13.52990 -13.19074 -12.96052 -12.55890 -12.49568 -12.44830 -12.10397 -11.88500 -11.73392 -11.60421 -11.53158 -11.10446 -11.01259 -10.96155 -10.92567 -10.78407 -10.74879 -10.21837 -10.08361 -9.94495 -9.72119 -9.60116 -9.24956 -8.96382 -8.91952 -8.61675 -6.96298 -5.83859 -3.15560 2.33469 2.67392 2.84921 3.34396 3.39120 3.42084 3.44293 4.20331 4.34514 4.40886 4.44494 4.49398 4.57392 4.76124 4.85898 4.94471 5.00285 5.01157 5.11316 5.14584 5.18163 5.24233 5.37111 5.42082 5.44404 5.48578 5.48876 5.59038 5.67858 5.71313 5.80568 5.82512 5.90154 6.09558 6.21671 6.30237 6.43659 6.47770 6.62317 6.71734 6.80361 7.07016 7.07272 7.27365 7.44336 7.79500 7.85561 7.86956 7.91086 8.50652 8.98311 9.64366 10.50449 11.33728 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.002655 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.619851 B =10542.551902 C =11480.633893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.614 5.614 5 C 0.110 3.890 6 C -0.113 4.113 7 C -0.107 4.107 8 C 0.515 3.485 9 O -0.532 6.532 10 N -0.716 5.716 11 C 0.124 3.876 12 C -0.095 4.095 13 C 0.083 3.917 14 O -0.575 6.575 15 C 0.167 3.833 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.129 3.871 26 C -0.129 4.129 27 C 0.109 3.891 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.395 0.605 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.035 0.965 41 H 0.372 0.628 42 H 0.030 0.970 43 H 0.081 0.919 44 H 0.255 0.745 45 H 0.051 0.949 46 H 0.035 0.965 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 12.563 -16.324 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.301 3.699 3 O -0.427 6.427 4 N -0.349 5.349 5 C -0.012 4.012 6 C -0.151 4.151 7 C -0.129 4.129 8 C 0.300 3.700 9 O -0.408 6.408 10 N -0.367 5.367 11 C 0.037 3.963 12 C -0.133 4.133 13 C 0.005 3.995 14 O -0.379 6.379 15 C 0.041 3.959 16 N -0.331 5.331 17 C -0.347 4.347 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C 0.003 3.997 26 C -0.167 4.167 27 C -0.014 4.014 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.229 0.771 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.217 0.783 42 H 0.047 0.953 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.109 0.891 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.641 13.366 -14.932 20.368 hybrid contribution -0.661 -1.232 -0.046 1.399 sum -4.302 12.134 -14.977 19.750 Atomic orbital electron populations 1.21955 0.91814 1.05466 1.04193 1.20827 0.90671 0.83008 0.75347 1.90713 1.70804 1.31089 1.50059 1.48200 1.07146 1.06041 1.73467 1.21658 0.79122 1.02139 0.98299 1.21720 1.01227 0.93118 0.99059 1.21353 0.96313 0.96566 0.98684 1.20453 0.81461 0.82190 0.85922 1.90703 1.34503 1.72844 1.42701 1.46227 1.41628 1.11728 1.37122 1.22933 0.93717 0.92375 0.87238 1.21321 0.94027 1.01952 0.96021 1.22125 0.81340 0.98687 0.97301 1.86506 1.25474 1.86629 1.39303 1.22565 0.94770 0.93501 0.85059 1.45712 1.81159 1.02009 1.04253 1.18960 1.40836 0.88977 0.85971 0.90070 1.24762 1.01755 0.96558 0.97209 1.69769 1.53250 1.11684 1.22353 0.86175 0.77974 0.79523 0.81955 1.21175 1.21542 1.20978 1.22772 0.97686 0.87958 0.91325 1.21952 0.94063 1.01079 0.99624 1.21799 0.96985 0.83865 0.98793 0.89225 0.89049 0.89375 0.88724 0.91399 0.90637 0.89736 0.88564 0.77087 0.90939 0.89181 0.93283 0.94681 0.78259 0.95260 0.90076 0.93550 0.93114 0.94783 0.89739 0.90534 0.89135 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 8.67 36.01 0.31 -0.69 16 2 C 0.51 5.07 7.81 -10.99 -0.09 4.99 16 3 O -0.55 -7.86 16.50 5.56 0.09 -7.77 16 4 N -0.61 -5.12 2.97 -172.74 -0.51 -5.63 16 5 C 0.11 0.98 6.43 -3.71 -0.02 0.96 16 6 C -0.11 -1.13 4.65 -26.61 -0.12 -1.26 16 7 C -0.11 -0.98 2.50 -91.72 -0.23 -1.21 16 8 C 0.51 6.97 6.81 -10.98 -0.07 6.89 16 9 O -0.53 -9.48 14.38 5.56 0.08 -9.40 16 10 N -0.72 -9.66 4.45 -49.08 -0.22 -9.87 16 11 C 0.12 2.23 0.67 -134.04 -0.09 2.14 16 12 C -0.09 -1.77 4.81 -26.73 -0.13 -1.89 16 13 C 0.08 1.28 6.83 37.16 0.25 1.54 16 14 O -0.57 -8.84 13.66 -35.23 -0.48 -9.32 16 15 C 0.17 3.60 6.69 -2.84 -0.02 3.58 16 16 N -0.60 -15.09 3.55 -177.55 -0.63 -15.72 16 17 C -0.22 -6.07 10.70 -15.06 -0.16 -6.23 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -26.24 11.39 55.49 0.63 -25.61 16 21 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.13 2.76 7.55 -2.97 -0.02 2.73 16 26 C -0.13 -0.91 5.27 -26.58 -0.14 -1.05 16 27 C 0.11 0.59 6.34 -3.68 -0.02 0.57 16 28 H 0.09 0.40 7.69 -51.93 -0.40 0.00 16 29 H 0.09 0.55 8.12 -51.93 -0.42 0.12 16 30 H 0.09 0.32 7.94 -51.93 -0.41 -0.09 16 31 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 4.16 7.96 -40.82 -0.32 3.83 16 37 H 0.07 1.43 7.09 -51.93 -0.37 1.06 16 38 H 0.09 1.97 8.02 -51.93 -0.42 1.56 16 39 H 0.05 0.77 7.54 -51.93 -0.39 0.38 16 40 H 0.03 0.47 7.62 -51.93 -0.40 0.07 16 41 H 0.37 3.69 9.12 45.56 0.42 4.11 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.93 6.56 -51.93 -0.34 1.59 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.48 7.42 -51.93 -0.39 0.10 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.09 0.33 5.93 -51.93 -0.31 0.02 16 50 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -36.19 396.31 -8.20 -44.39 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.46 Total: 5.34 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -0.65 Total: 10.79 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.73 Total: -56.83 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.31 Total: -26.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.19 -8.20 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675110753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.874 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds