Wall clock time and date at job start Tue Mar 31 2020 23:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21274 * 120.00094 * 2 1 4 4 N 1.34772 * 119.99601 * 180.02562 * 2 1 3 5 5 C 1.46929 * 120.62903 * 179.97438 * 4 2 1 6 6 C 1.53192 * 108.77246 * 126.41231 * 5 4 2 7 7 C 1.53042 * 109.31156 * 54.64296 * 6 5 4 8 8 C 1.50703 * 109.45990 * 178.62551 * 7 6 5 9 9 O 1.21278 * 119.99819 * 0.02618 * 8 7 6 10 10 N 1.34778 * 120.00149 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00125 * 174.80088 * 10 8 7 12 12 C 1.53004 * 112.94240 * 295.31193 * 11 10 8 13 13 C 1.53004 * 109.46822 * 304.23385 * 12 11 10 14 14 O 1.42901 * 109.46720 * 178.39104 * 13 12 11 15 15 C 1.53948 * 113.74161 * 163.71792 * 11 10 8 16 16 N 1.47807 * 86.03253 * 222.08107 * 15 11 10 17 17 C 1.36937 * 134.45496 * 204.63720 * 16 15 11 18 18 H 1.08001 * 120.00377 * 179.86917 * 17 16 15 19 19 C 1.38812 * 120.00074 * 359.87622 * 17 16 15 20 20 N 1.31622 * 120.00064 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46943 * 60.00365 * 21 19 17 23 23 H 1.48503 * 109.47350 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47573 * 300.00284 * 21 19 17 25 25 C 1.47583 * 91.05572 * 24.55215 * 16 15 11 26 26 C 1.53047 * 109.53636 * 298.62638 * 7 6 5 27 27 C 1.46934 * 120.63330 * 0.02562 * 4 2 1 28 28 H 1.09001 * 109.47205 * 239.99769 * 1 2 3 29 29 H 1.09005 * 109.46850 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47289 * 119.99700 * 1 2 3 31 31 H 1.08997 * 109.58360 * 6.62605 * 5 4 2 32 32 H 1.08999 * 109.70320 * 246.26693 * 5 4 2 33 33 H 1.08997 * 109.50490 * 294.68311 * 6 5 4 34 34 H 1.09005 * 109.49454 * 174.58503 * 6 5 4 35 35 H 1.08991 * 109.46765 * 58.64943 * 7 6 5 36 36 H 0.97001 * 119.99611 * 354.79775 * 10 8 7 37 37 H 1.09001 * 109.47109 * 64.22909 * 12 11 10 38 38 H 1.08998 * 109.47075 * 184.23311 * 12 11 10 39 39 H 1.09002 * 109.47166 * 298.39200 * 13 12 11 40 40 H 1.09002 * 109.47394 * 58.39016 * 13 12 11 41 41 H 0.96702 * 113.99807 * 179.97438 * 14 13 12 42 42 H 1.08992 * 113.77018 * 336.34892 * 15 11 10 43 43 H 1.08997 * 113.76326 * 107.74548 * 15 11 10 44 44 H 0.97000 * 120.00401 * 179.97438 * 20 19 17 45 45 H 1.08993 * 113.76727 * 221.14730 * 25 16 15 46 46 H 1.08994 * 113.86888 * 89.76068 * 25 16 15 47 47 H 1.08996 * 109.49700 * 181.32093 * 26 7 6 48 48 H 1.08998 * 109.49591 * 301.42350 * 26 7 6 49 49 H 1.09000 * 109.58347 * 353.37326 * 27 4 2 50 50 H 1.08997 * 109.58217 * 113.65898 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6500 -1.1834 -0.0011 6 6 4.1339 -2.0501 1.1658 7 6 3.4901 -3.4351 1.0686 8 6 3.9900 -4.3013 2.1960 9 8 4.7824 -3.8549 2.9982 10 7 3.5563 -5.5721 2.3127 11 6 4.1263 -6.4493 3.3383 12 6 5.6120 -6.7397 3.1162 13 6 5.8133 -7.3275 1.7180 14 8 7.2051 -7.5638 1.4965 15 6 3.2836 -7.7073 3.6160 16 7 3.5672 -7.4568 5.0448 17 6 3.6107 -8.2419 6.1659 18 1 3.8522 -7.8037 7.1230 19 6 3.3445 -9.6010 6.0722 20 7 3.0507 -10.1353 4.9057 21 14 3.4044 -10.6722 7.6014 22 1 2.4118 -10.1796 8.5900 23 1 3.0849 -12.0756 7.2357 24 1 4.7647 -10.6131 8.1942 25 6 3.7867 -6.0221 4.7778 26 6 1.9687 -3.3002 1.1657 27 6 1.4602 -2.4477 -0.0017 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 4.0267 -0.1675 0.1175 32 1 4.0126 -1.6003 -0.9407 33 1 3.8503 -1.5823 2.1085 34 1 5.2185 -2.1491 1.1200 35 1 3.7539 -3.8922 0.1150 36 1 2.8668 -5.9058 1.7176 37 1 6.1806 -5.8141 3.2064 38 1 5.9585 -7.4533 3.8637 39 1 5.2677 -8.2676 1.6371 40 1 5.4406 -6.6258 0.9717 41 1 7.4072 -7.9375 0.6278 42 1 2.2319 -7.5989 3.3512 43 1 3.7273 -8.6265 3.2334 44 1 2.8651 -11.0851 4.8401 45 1 4.6312 -5.5983 5.3211 46 1 2.8841 -5.4160 4.8548 47 1 1.5122 -4.2889 1.1200 48 1 1.7055 -2.8205 2.1085 49 1 0.3920 -2.2658 0.1166 50 1 1.6405 -2.9675 -0.9425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675110753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:10 Heat of formation + Delta-G solvation = -100.059651 kcal Electronic energy + Delta-G solvation = -30901.267633 eV Core-core repulsion = 26735.852030 eV Total energy + Delta-G solvation = -4165.415603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.74173 -40.95281 -39.59660 -37.90986 -37.69267 -35.28169 -34.28995 -33.62626 -32.44576 -31.68189 -30.28025 -29.03435 -26.94647 -26.84238 -24.99390 -24.15766 -23.42720 -22.70076 -21.19965 -20.12821 -19.94294 -18.78447 -18.55314 -18.27140 -17.73940 -17.12519 -16.79497 -16.67805 -16.45630 -16.11098 -15.96970 -15.63853 -15.27953 -15.07609 -15.00334 -14.72509 -14.40524 -14.23360 -14.03102 -13.62983 -13.51755 -13.31570 -13.23036 -13.06204 -13.00209 -12.87834 -12.81290 -12.73475 -12.57729 -12.24296 -12.19897 -12.07685 -11.76818 -11.72105 -11.62145 -11.37479 -10.96741 -10.87739 -10.82721 -10.54381 -10.00977 -9.65916 -8.95800 -7.93696 -5.26147 1.45591 1.48214 1.54014 1.63267 1.74576 2.06145 2.19012 2.49689 3.15991 3.26399 3.37759 3.56967 3.62244 3.75284 3.79117 3.87063 4.09654 4.13812 4.24126 4.32941 4.34218 4.36977 4.45115 4.50146 4.53294 4.64415 4.69985 4.71339 4.72776 4.78623 4.83538 4.86090 4.87632 4.96543 5.05717 5.13942 5.15971 5.16351 5.20265 5.23259 5.33877 5.48100 5.57011 5.74957 5.90277 6.44668 6.70812 6.90713 6.93340 7.18331 7.40939 7.56320 8.49834 9.22796 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.002655 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.619851 B =10542.551902 C =11480.633893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.501 3.499 3 O -0.606 6.606 4 N -0.613 5.613 5 C 0.115 3.885 6 C -0.107 4.107 7 C -0.095 4.095 8 C 0.514 3.486 9 O -0.578 6.578 10 N -0.702 5.702 11 C 0.157 3.843 12 C -0.090 4.090 13 C 0.093 3.907 14 O -0.595 6.595 15 C 0.174 3.826 16 N -0.633 5.633 17 C -0.240 4.240 18 H 0.075 0.925 19 C -0.055 4.055 20 N -0.945 5.945 21 Si 0.975 3.025 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.282 1.282 25 C 0.126 3.874 26 C -0.127 4.127 27 C 0.108 3.892 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.416 0.584 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.397 0.603 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.041 0.959 47 H 0.109 0.891 48 H 0.055 0.945 49 H 0.117 0.883 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 11.961 -18.832 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.292 3.708 3 O -0.489 6.489 4 N -0.346 5.346 5 C -0.008 4.008 6 C -0.145 4.145 7 C -0.116 4.116 8 C 0.302 3.698 9 O -0.457 6.457 10 N -0.355 5.355 11 C 0.070 3.930 12 C -0.128 4.128 13 C 0.016 3.984 14 O -0.403 6.403 15 C 0.049 3.951 16 N -0.360 5.360 17 C -0.368 4.368 18 H 0.093 0.907 19 C -0.249 4.249 20 N -0.593 5.593 21 Si 0.803 3.197 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.208 1.208 25 C -0.001 4.001 26 C -0.165 4.165 27 C -0.013 4.013 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.247 0.753 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.058 0.942 47 H 0.127 0.873 48 H 0.074 0.926 49 H 0.135 0.865 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.427 12.744 -17.494 22.313 hybrid contribution -0.052 -1.001 0.766 1.261 sum -5.478 11.743 -16.728 21.160 Atomic orbital electron populations 1.21976 0.88398 1.05910 1.06376 1.21650 0.92397 0.82510 0.74235 1.90687 1.72185 1.33164 1.52820 1.48355 1.06908 1.06994 1.72335 1.21549 0.80004 1.00593 0.98682 1.21611 1.00803 0.93954 0.98173 1.21357 0.97700 0.94658 0.97883 1.21267 0.80343 0.81922 0.86292 1.90705 1.36610 1.73623 1.44715 1.45938 1.42025 1.11345 1.36230 1.22119 0.93020 0.91065 0.86841 1.21181 0.93947 1.00330 0.97390 1.21963 0.81771 0.99108 0.95606 1.86446 1.25177 1.87035 1.41650 1.22460 0.95398 0.93952 0.83322 1.45995 1.81513 1.03443 1.05013 1.19241 1.40745 0.89885 0.86917 0.90673 1.25500 1.01897 0.97524 0.99997 1.69909 1.53982 1.11590 1.23774 0.85211 0.77918 0.77668 0.78854 1.20492 1.21392 1.20785 1.22851 0.97171 0.86466 0.93588 1.21993 0.92206 1.02685 0.99619 1.22085 0.98017 0.82056 0.99181 0.87466 0.89692 0.86372 0.91205 0.88858 0.93720 0.90749 0.84959 0.74621 0.92263 0.93368 0.93383 0.91529 0.75328 0.94376 0.92339 0.93902 0.94966 0.94177 0.87275 0.92596 0.86518 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 8.67 71.24 0.62 -0.82 16 2 C 0.50 9.22 7.81 87.66 0.68 9.91 16 3 O -0.61 -17.71 16.50 -3.01 -0.05 -17.76 16 4 N -0.61 -8.69 2.97 -818.81 -2.43 -11.13 16 5 C 0.11 1.88 6.43 86.36 0.56 2.44 16 6 C -0.11 -2.06 4.65 30.67 0.14 -1.92 16 7 C -0.09 -1.44 2.50 -11.51 -0.03 -1.47 16 8 C 0.51 13.05 6.81 87.66 0.60 13.65 16 9 O -0.58 -20.71 14.38 -3.02 -0.04 -20.75 16 10 N -0.70 -17.40 4.45 -427.58 -1.90 -19.30 16 11 C 0.16 5.64 0.67 5.37 0.00 5.65 16 12 C -0.09 -3.39 4.81 30.60 0.15 -3.24 16 13 C 0.09 2.73 6.83 71.98 0.49 3.23 16 14 O -0.59 -17.40 13.66 -148.98 -2.04 -19.43 16 15 C 0.17 7.51 6.69 86.44 0.58 8.08 16 16 N -0.63 -32.31 3.55 -715.64 -2.54 -34.85 16 17 C -0.24 -13.55 10.70 84.03 0.90 -12.65 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 20 N -0.94 -54.14 11.39 21.65 0.25 -53.90 16 21 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 C 0.13 5.48 7.55 86.49 0.65 6.13 16 26 C -0.13 -1.31 5.27 30.69 0.16 -1.15 16 27 C 0.11 0.66 6.34 86.38 0.55 1.21 16 28 H 0.11 0.56 7.69 -2.39 -0.02 0.55 16 29 H 0.08 0.87 8.12 -2.38 -0.02 0.85 16 30 H 0.12 0.32 7.94 -2.39 -0.02 0.30 16 31 H 0.07 1.52 7.00 -2.39 -0.02 1.51 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16 34 H 0.07 1.58 8.07 -2.38 -0.02 1.56 16 35 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.42 7.13 7.96 -92.71 -0.74 6.39 16 37 H 0.06 2.39 7.09 -2.39 -0.02 2.38 16 38 H 0.05 2.21 8.02 -2.39 -0.02 2.19 16 39 H 0.05 1.43 7.54 -2.39 -0.02 1.42 16 40 H 0.07 1.55 7.62 -2.39 -0.02 1.53 16 41 H 0.40 6.91 9.12 -74.06 -0.68 6.24 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 2.81 6.56 -2.39 -0.02 2.79 16 44 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.03 1.50 8.10 -2.39 -0.02 1.48 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.11 0.66 7.42 -2.39 -0.02 0.64 16 48 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.12 0.19 5.93 -2.39 -0.01 0.17 16 50 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -84.28 396.31 -0.66 -84.94 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.45 Total: 18.43 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 6.52 Total: 26.42 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -6.63 Total: -119.18 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -2.13 Total: -57.95 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -84.28 -0.66 -84.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675110753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.118 kcal (2) G-P(sol) polarization free energy of solvation -84.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds